Gelmap. Spot visualization by LUH

Proteinlist

-	ID	Mascot score	SC [%]	Peptides	FDR	Calculated mass[kDa]	Apparent mass 2D[kDa]	Apparent mass 1D[kDa]	GRAVY score	Accession	Name	Protein complex/Metabolic pathway	Physiological function	Assingned location in GelMap	X	Y
[show peptides]	1	1666	46.4	28	<0.01	65.5	62.9	16	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2895.85	447.52
[show peptides]	2	835	27.6	15	<0.01	65.5	62.3	12	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2970.97	452.16
[show peptides]	3	60	8.8	1	<0.05	13.0	2.1	260	0.234	AT2G26500.1	PetM, putative (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1666.10	2523.49
[show peptides]	3	60	8.8	1	<0.05	13.0	2.1	260	0.234	AT2G26500.2	PetM, putative (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1666.10	2523.49
[show peptides]	3	60	11.8	1	<0.05	9.9	2.1	260	-0.038	AT2G26500.3	PetM, putative (Gene model 3)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1666.10	2523.49
[show peptides]	4	1672	31.2	31	<0.01	121.0	88.1	39	-0.321	AT3G19170.1	PreP1, presequence protease, AtPreP1, ATZNMP	proteases	V) protein folding & processing	plastid	2640.00	307.72
[show peptides]	4	40	1.6	1	<0.01	79.9	88.1	39	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2640.00	307.72
[show peptides]	5	2699	59.7	47	<0.01	100.6	82.3	46	-0.261	AT1G63770.4	Peptidase M1 family protein (Gene model 4)	proteases	V) protein folding & processing	cytosol	2589.93	332.30
[show peptides]	5	2698	54.1	47	<0.01	110.8	82.3	46	-0.263	AT1G63770.3	Peptidase M1 family protein (Gene model 3)	proteases	V) protein folding & processing	cytosol	2589.93	332.30
[show peptides]	5	1362	34.8	28	<0.01	102.1	82.3	46	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2589.93	332.30
[show peptides]	5	252	7.5	7	<0.01	108.2	82.3	46	-0.179	AT2G05710.1	ACO3, aconitase 3	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2589.93	332.30
[show peptides]	5	43	1.6	1	<0.01	79.9	82.3	46	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2589.93	332.30
[show peptides]	6	169	12.0	2	<0.01	20.1	17.6	12	0.006	AT3G27830.1	Rpl12-A, Ribosomal protein L12-A	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2969.33	1428.44
[show peptides]	6	48	6.4	1	<0.01	23.9	17.6	12	-0.107	AT4G32260.1	F0 part, B/B`subunit	d) atp-synthase	I) photophosphorylation	plastid	2969.33	1428.44
[show peptides]	6	45	5.0	1	<0.01	24.2	17.6	12	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	2969.33	1428.44
[show peptides]	6	33	1.8	1	<0.05	44.1	17.6	12	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2969.33	1428.44
[show peptides]	7	2500	51.0	43	<0.01	82.3	70.0	22	-0.204	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2804.18	397.94
[show peptides]	7	1558	47.4	27	<0.01	80.0	70.0	22	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2804.18	397.94
[show peptides]	7	1558	47.4	27	<0.01	79.8	70.0	22	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2804.18	397.94
[show peptides]	7	480	15.3	11	<0.01	88.8	70.0	22	-0.360	AT5G65620.1	Zincin-like metalloproteases family protein (AT5G65620.1)	proteases	V) protein folding & processing	plastid	2804.18	397.94
[show peptides]	7	357	12.5	7	<0.01	81.3	70.0	22	-0.330	AT5G36210.1	Alpha/beta-Hydrolases superfamily protein (AT5G36210.1)	proteases	V) protein folding & processing	plastid	2804.18	397.94
[show peptides]	7	125	6.4	4	<0.01	86.3	70.0	22	-0.466	AT4G09020.1	ATISA3, ISA3, isoamylase 3	starch metabolism	VI) other metabolic pathways	plastid	2804.18	397.94
[show peptides]	8	2084	45.1	36	<0.05	82.3	69.4	29	-0.204	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2731.89	401.60
[show peptides]	8	1799	42.9	29	<0.05	80.0	69.4	29	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2731.89	401.60
[show peptides]	8	1799	43.0	29	<0.05	79.8	69.4	29	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2731.89	401.60
[show peptides]	8	436	14.9	11	<0.05	88.8	69.4	29	-0.360	AT5G65620.1	Zincin-like metalloproteases family protein (AT5G65620.1)	proteases	V) protein folding & processing	plastid	2731.89	401.60
[show peptides]	8	326	12.0	8	<0.05	79.0	69.4	29	-0.366	AT5G10540.1	Zincin-like metalloproteases family protein (AT5G10540.1)	proteases	V) protein folding & processing	plastid	2731.89	401.60
[show peptides]	9	989	50.9	16	<0.01	35.1	31.5	15	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	866	50.2	15	<0.01	35.0	31.5	15	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	505	26.4	8	<0.01	37.9	31.5	15	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2905.35	907.02
[show peptides]	9	432	25.8	7	<0.01	35.0	31.5	15	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	349	23.8	7	<0.01	35.8	31.5	15	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2905.35	907.02
[show peptides]	9	326	19.8	6	<0.01	29.4	31.5	15	-0.334	AT4G17600.1	LIL3:1, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	281	19.0	5	<0.01	33.3	31.5	15	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2905.35	907.02
[show peptides]	9	270	16.8	4	<0.01	30.5	31.5	15	-0.053	AT2G34460.1	NAD(P)-binding Rossmann-fold superfamily protein (AT2G34460.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	234	16.4	4	<0.01	30.2	31.5	15	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.7	3	<0.01	35.7	31.5	15	-0.022	AT4G22890.1	PGR5-LIKE A (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.7	3	<0.01	35.7	31.5	15	-0.022	AT4G22890.2	PGR5-LIKE A (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.7	3	<0.01	35.7	31.5	15	-0.022	AT4G22890.3	PGR5-LIKE A (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.8	3	<0.01	35.5	31.5	15	-0.029	AT4G22890.4	PGR5-LIKE A (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.8	3	<0.01	35.6	31.5	15	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.8	3	<0.01	35.6	31.5	15	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	217	11.4	3	<0.01	31.1	31.5	15	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	119	16.7	3	<0.01	28.6	31.5	15	-0.251	AT5G47110.1	LIL3:2, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	88	7.2	2	<0.01	31.3	31.5	15	-0.008	AT1G16880.1	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	61	6.4	1	<0.01	24.4	31.5	15	-0.193	AT5G07020.1	Proline-rich family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	58	5.6	1	<0.01	22.7	31.5	15	0.084	AT1G16880.2	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	45	3.1	1	<0.01	38.9	31.5	15	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	38	3.2	1	<0.05	38.9	31.5	15	-0.283	AT4G28740.1	AT4G28740.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2905.35	907.02
[show peptides]	9	34	3.4	1	<0.05	35.2	31.5	15	-0.173	AT4G31530.1	NAD(P)-binding Rossmann-fold superfamily protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	34	3.3	1	<0.05	36.7	31.5	15	-0.188	AT4G31530.2	NAD(P)-binding Rossmann-fold superfamily protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	10	1068	57.2	19	<0.01	35.1	31.2	12	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	1042	57.1	18	<0.01	35.0	31.2	12	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	586	44.0	10	<0.01	35.0	31.2	12	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	231	17.5	4	<0.01	30.5	31.2	12	-0.053	AT2G34460.1	NAD(P)-binding Rossmann-fold superfamily protein (AT2G34460.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	201	20.4	4	<0.01	30.2	31.2	12	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	194	13.8	3	<0.01	37.9	31.2	12	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2972.10	913.30
[show peptides]	10	146	7.2	2	<0.01	35.8	31.2	12	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2972.10	913.30
[show peptides]	10	118	10.7	2	<0.01	31.3	31.2	12	-0.008	AT1G16880.1	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.7	31.2	12	-0.022	AT4G22890.1	PGR5-LIKE A (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.7	31.2	12	-0.022	AT4G22890.2	PGR5-LIKE A (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.7	31.2	12	-0.022	AT4G22890.3	PGR5-LIKE A (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.5	31.2	12	-0.029	AT4G22890.4	PGR5-LIKE A (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.6	31.2	12	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	78	5.6	1	<0.01	22.7	31.2	12	0.084	AT1G16880.2	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	67	4.5	1	<0.01	31.1	31.2	12	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	41	4.4	1	<0.05	33.3	31.2	12	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2972.10	913.30
[show peptides]	10	41	4.6	1	<0.05	32.3	31.2	12	-0.077	AT2G21170.2	TIM, PDTPI, triosephosphate isomerase (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2972.10	913.30
[show peptides]	11	90	14.4	2	<0.01	14.5	15.7	12	-0.035	ATCG00470.1	F1 part, epsilon subunit (AtpE)	d) atp-synthase	I) photophosphorylation	plastid	2968.37	1527.74
[show peptides]	11	64	6.3	1	<0.01	23.8	15.7	12	-0.089	AT2G44920.2	Tetratricopeptide repeat (TPR)-like superfamily protein (AT2G44920.2)	TPR proteins	VI) other metabolic pathways	plastid	2968.37	1527.74
[show peptides]	11	58	4.4	1	<0.01	20.2	15.7	12	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	2968.37	1527.74
[show peptides]	12	271	15.9	6	<0.01	17.7	12.6	18	0.201	AT4G01150.1	AT4G01150.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2861.43	1713.98
[show peptides]	12	149	23.6	3	<0.01	18.5	12.6	18	0.070	AT2G46820.1	PsaP, pTAC8, TMP14 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2861.43	1713.98
[show peptides]	12	149	23.6	3	<0.01	18.5	12.6	18	0.070	AT2G46820.2	PsaP, pTAC8, TMP14 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2861.43	1713.98
[show peptides]	12	68	13.0	1	<0.01	7.3	12.6	18	-0.158	AT3G63160.1	AT3G63160.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2861.43	1713.98
[show peptides]	13	183	10.4	4	<0.01	17.7	12.0	12	0.201	AT4G01150.1	AT4G01150.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2976.85	1751.88
[show peptides]	13	137	24.7	3	<0.01	18.5	12.0	12	0.070	AT2G46820.1	PsaP, pTAC8, TMP14 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2976.85	1751.88
[show peptides]	13	137	24.7	3	<0.01	18.5	12.0	12	0.070	AT2G46820.2	PsaP, pTAC8, TMP14 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2976.85	1751.88
[show peptides]	13	52	13.0	1	<0.01	7.3	12.0	12	-0.158	AT3G63160.1	AT3G63160.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2976.85	1751.88
[show peptides]	14	859	41.0	13	<0.01	44.5	11.0	40	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	705	28.4	13	<0.01	47.7	11.0	40	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	259	8.7	4	<0.01	55.3	11.0	40	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	220	11.2	4	<0.01	28.2	11.0	40	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	203	11.1	4	<0.01	46.6	11.0	40	-0.215	AT2G17630.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2637.32	1819.80
[show peptides]	14	167	17.1	4	<0.01	14.6	11.0	40	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	159	12.3	5	<0.01	40.3	11.0	40	-0.074	AT3G14420.1	Aldolase-type TIM barrel family protein (AT3G14420.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.3	5	<0.01	40.3	11.0	40	-0.074	AT3G14420.2	Aldolase-type TIM barrel family protein (AT3G14420.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.9	5	<0.01	38.2	11.0	40	-0.046	AT3G14420.4	Aldolase-type TIM barrel family protein (AT3G14420.4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.5	5	<0.01	39.5	11.0	40	-0.054	AT3G14420.5	Aldolase-type TIM barrel family protein (AT3G14420.5)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.3	5	<0.01	40.3	11.0	40	-0.005	AT3G14420.6	Aldolase-type TIM barrel family protein (AT3G14420.6)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	144	5.7	3	<0.01	52.0	11.0	40	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	10.6	3	<0.01	37.7	11.0	40	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	10.6	3	<0.01	37.7	11.0	40	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	6.1	3	<0.01	49.1	11.0	40	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	6.1	3	<0.01	48.5	11.0	40	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	130	6.9	4	<0.01	80.0	11.0	40	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	130	6.9	4	<0.01	79.8	11.0	40	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	113	7.9	3	<0.01	45.9	11.0	40	-0.102	AT5G18660.1	PCB2, NAD(P)-binding Rossmann-fold superfamily protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2637.32	1819.80
[show peptides]	14	113	9.1	2	<0.01	34.3	11.0	40	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	93	7.8	3	<0.01	43.0	11.0	40	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	81	5.8	1	<0.01	18.4	11.0	40	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	81	5.5	1	<0.01	19.3	11.0	40	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	58	2.3	1	<0.01	46.1	11.0	40	-0.284	AT1G77490.1	TAPX, thylakoidal ascorbate peroxidase	antioxidants	VI) other metabolic pathways	plastid	2637.32	1819.80
[show peptides]	15	130	17.1	4	<0.01	14.6	10.9	21	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2823.36	1825.10
[show peptides]	15	79	5.8	1	<0.01	18.4	10.9	21	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2823.36	1825.10
[show peptides]	15	79	5.5	1	<0.01	19.3	10.9	21	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2823.36	1825.10
[show peptides]	16	109	17.1	4	<0.01	14.6	10.9	26	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2758.31	1822.36
[show peptides]	16	97	5.8	1	<0.01	18.4	10.9	26	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2758.31	1822.36
[show peptides]	16	97	5.5	1	<0.01	19.3	10.9	26	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2758.31	1822.36
[show peptides]	17	89	5.8	1	<0.01	18.4	10.2	11	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2981.67	1873.89
[show peptides]	17	89	5.5	1	<0.01	19.3	10.2	11	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2981.67	1873.89
[show peptides]	18	1476	45.9	25	<0.01	53.0	104.3	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	18	189	26.7	5	<0.01	20.2	104.3	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	18	178	22.1	4	<0.01	20.3	104.3	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	18	178	21.5	4	<0.01	20.8	104.3	430	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	19	1218	29.7	24	<0.01	102.1	86.3	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.70	314.94
[show peptides]	19	930	18.5	17	<0.01	112.1	86.3	170	-0.301	AT1G06950.1	Tic110, ATTIC110, translocon at the inner envelope membrane of chloroplasts 110	protein transporters	III) transport	plastid	1988.70	314.94
[show peptides]	19	574	13.8	12	<0.01	115.2	86.3	170	-0.391	AT4G01800.1	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1 (Gene model 1)	protein transporters	III) transport	plastid	1988.70	314.94
[show peptides]	19	573	13.3	12	<0.01	114.4	86.3	170	-0.215	AT1G56500.1	Haloacid dehalogenase-like hydrolase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.70	314.94
[show peptides]	19	424	12.2	10	<0.01	103.5	86.3	170	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1988.70	314.94
[show peptides]	19	35	2.3	1	<0.05	52.0	86.3	170	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1988.70	314.94
[show peptides]	19	35	2.5	1	<0.05	49.1	86.3	170	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1988.70	314.94
[show peptides]	19	35	2.5	1	<0.05	48.5	86.3	170	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1988.70	314.94
[show peptides]	20	43	1.1	1	<0.01	83.0	1.6	890	0.015	AT5G12080.1	MSL10, ATMSL10, mechanosensitive channel of small conductance-like 10 (Gene model 1)	other transporters	III) transport	plasma membrane	782.19	2568.11
[show peptides]	20	43	1.1	1	<0.01	83.0	1.6	890	0.015	AT5G12080.2	MSL10, ATMSL10, mechanosensitive channel of small conductance-like 10 (Gene model 2)	other transporters	III) transport	plasma membrane	782.19	2568.11
[show peptides]	20	43	1.1	1	<0.01	83.0	1.6	890	0.015	AT5G12080.3	MSL10, ATMSL10, mechanosensitive channel of small conductance-like 10 (Gene model 3)	other transporters	III) transport	plasma membrane	782.19	2568.11
[show peptides]	21	1341	45.7	25	<0.01	53.0	97.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	275.71
[show peptides]	21	68	4.4	1	<0.01	20.2	97.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	275.71
[show peptides]	22	740	20.5	15	<0.01	80.0	69.6	69	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2442.77	400.22
[show peptides]	22	740	20.5	15	<0.01	79.8	69.6	69	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2442.77	400.22
[show peptides]	22	223	8.8	6	<0.01	76.5	69.6	69	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2442.77	400.22
[show peptides]	23	105	2.7	2	<0.01	82.5	94.2	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	285.39
[show peptides]	23	77	1.9	2	<0.01	121.1	94.2	1500	-0.260	ATCG00190.1	RpoB, RNA polymerase subunit beta	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62	285.39
[show peptides]	23	54	1.1	1	<0.01	85.2	94.2	1500	0.577	ATCG01010.1	NdhF	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	285.39
[show peptides]	23	51	0.9	1	<0.01	83.2	94.2	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	285.39
[show peptides]	23	45	1.2	1	<0.01	102.9	94.2	1500	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62	285.39
[show peptides]	24	546	11.6	10	<0.01	82.5	76.3	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	525	13.9	12	<0.01	83.2	76.3	560	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	288	11.1	5	<0.01	53.0	76.3	560	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1106.40	361.26
[show peptides]	24	227	10.8	4	<0.01	39.5	76.3	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	189	8.2	3	<0.01	51.9	76.3	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	171	6.8	2	<0.01	38.9	76.3	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	156	6.9	3	<0.01	56.0	76.3	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	52	2.4	1	<0.01	55.3	76.3	560	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	25	2131	51.0	40	<0.01	102.1	81.6	140	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2089.28	335.26
[show peptides]	25	1143	31.9	25	<0.01	103.5	81.6	140	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2089.28	335.26
[show peptides]	25	164	6.5	6	<0.01	108.9	81.6	140	-0.447	AT5G15450.1	APG6, ClpB3, ClpB-P, casein lytic proteinase B3	other HSP	V) protein folding & processing	plastid	2089.28	335.26
[show peptides]	25	88	5.4	3	<0.01	108.6	81.6	140	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2089.28	335.26
[show peptides]	26	136	3.5	3	<0.01	82.5	88.8	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	305.21
[show peptides]	26	73	2.3	2	<0.01	83.2	88.8	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	305.21
[show peptides]	26	66	1.2	1	<0.01	102.9	88.8	1700	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.56	305.21
[show peptides]	26	48	0.9	1	<0.01	115.1	88.8	1700	-0.341	AT1G79560.1	FtsH12, FtsH protease 12, EMB156, EMB36, EMB1047	proteases	V) protein folding & processing	plastid	303.56	305.21
[show peptides]	27	1208	42.0	22	<0.01	53.0	86.2	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	315.48
[show peptides]	27	195	10.5	4	<0.01	47.4	86.2	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	315.48
[show peptides]	27	195	10.5	4	<0.01	47.4	86.2	430	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	315.48
[show peptides]	27	195	10.5	4	<0.01	47.4	86.2	430	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	315.48
[show peptides]	27	49	1.8	1	<0.01	115.2	86.2	430	-0.391	AT4G01800.1	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1 (Gene model 1)	protein transporters	III) transport	plastid	1357.29	315.48
[show peptides]	27	49	1.7	1	<0.05	117.4	86.2	430	-0.350	AT4G01800.2	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1 (Gene model 2)	protein transporters	III) transport	plastid	1357.29	315.48
[show peptides]	28	80	1.2	1	<0.01	102.9	89.2	1500	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62	303.41
[show peptides]	28	43	0.9	1	<0.01	115.1	89.2	1500	-0.341	AT1G79560.1	FtsH12, FtsH protease 12, EMB156, EMB36, EMB1047	proteases	V) protein folding & processing	plastid	419.62	303.41
[show peptides]	28	36	0.9	1	<0.05	83.2	89.2	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	303.41
[show peptides]	28	31	3.1	1	<0.05	28.7	89.2	1500	-0.256	AT1G06380.1	Ribosomal protein L1p/L10e family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	303.41
[show peptides]	29	114	3.5	3	<0.01	82.5	82.5	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	331.25
[show peptides]	29	75	2.3	2	<0.01	83.2	82.5	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	331.25
[show peptides]	30	129	3.5	3	<0.01	82.5	82.9	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	329.28
[show peptides]	30	84	2.3	2	<0.01	83.2	82.9	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	329.28
[show peptides]	31	370	16.1	9	<0.01	85.3	77.9	1500	-0.525	AT2G38040.1	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62	353.08
[show peptides]	31	370	16.1	9	<0.01	85.3	77.9	1500	-0.525	AT2G38040.2	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62	353.08
[show peptides]	31	200	3.7	4	<0.01	82.5	77.9	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	353.08
[show peptides]	31	128	2.7	2	<0.01	88.7	77.9	1500	-0.293	AT5G53170.1	FtsH11, FtsH protease 11	proteases	V) protein folding & processing	plastid	419.62	353.08
[show peptides]	32	706	17.8	14	<0.01	103.5	79.5	270	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1654.25	345.33
[show peptides]	32	574	18.1	11	<0.01	56.0	79.5	270	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	464	11.3	9	<0.01	102.1	79.5	270	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1654.25	345.33
[show peptides]	32	372	11.8	6	<0.01	51.9	79.5	270	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	196	10.8	4	<0.01	39.5	79.5	270	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	127	6.5	3	<0.01	47.4	79.5	270	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1654.25	345.33
[show peptides]	32	127	6.5	3	<0.01	47.4	79.5	270	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1654.25	345.33
[show peptides]	32	127	6.5	3	<0.01	47.4	79.5	270	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1654.25	345.33
[show peptides]	32	81	4.9	2	<0.01	55.3	79.5	270	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	64	2.8	1	<0.01	53.9	79.5	270	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	60	3.8	1	<0.01	35.4	79.5	270	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	41	3.1	1	<0.05	38.9	79.5	270	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	33	1717	37.1	32	<0.01	108.6	80.3	170	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.03	341.62
[show peptides]	33	1414	29.8	26	<0.01	102.1	80.3	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.03	341.62
[show peptides]	33	896	22.3	19	<0.01	103.5	80.3	170	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1988.03	341.62
[show peptides]	34	310	7.3	6	<0.01	85.3	77.6	1700	-0.525	AT2G38040.1	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	303.56	354.70
[show peptides]	34	310	7.3	6	<0.01	85.3	77.6	1700	-0.525	AT2G38040.2	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	303.56	354.70
[show peptides]	34	209	3.7	4	<0.01	82.5	77.6	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	354.70
[show peptides]	34	125	2.7	2	<0.01	88.7	77.6	1700	-0.293	AT5G53170.1	FtsH11, FtsH protease 11	proteases	V) protein folding & processing	plastid	303.56	354.70
[show peptides]	35	734	30.7	14	<0.01	53.0	79.4	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	345.96
[show peptides]	35	379	9.0	8	<0.01	103.5	79.4	430	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1357.29	345.96
[show peptides]	35	175	2.6	2	<0.01	99.8	79.4	430	-0.546	AT1G69830.1	ATAMY3, AMY3, alpha-amylase-like 3	starch metabolism	VI) other metabolic pathways	plastid	1357.29	345.96
[show peptides]	35	88	5.1	2	<0.01	47.4	79.4	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	345.96
[show peptides]	35	58	4.4	1	<0.01	20.2	79.4	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	345.96
[show peptides]	36	419	14.4	7	<0.01	53.0	65.3	470	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1239.02	429.37
[show peptides]	36	298	6.7	6	<0.01	83.2	65.3	470	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1239.02	429.37
[show peptides]	36	274	6.3	6	<0.01	82.5	65.3	470	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1239.02	429.37
[show peptides]	37	64	3.5	1	<0.01	63.8	69.4	34	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	2683.68	401.27
[show peptides]	37	64	3.5	1	<0.01	63.8	69.4	34	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	2683.68	401.27
[show peptides]	38	1003	26.9	19	<0.01	86.1	74.5	87	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2348.58	371.10
[show peptides]	38	808	20.0	15	<0.01	80.0	74.5	87	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	808	20.0	15	<0.01	79.8	74.5	87	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	194	3.9	6	<0.01	176.8	74.5	87	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2348.58	371.10
[show peptides]	38	194	3.9	6	<0.01	179.9	74.5	87	-0.148	AT5G04140.2	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2348.58	371.10
[show peptides]	38	129	4.3	3	<0.01	92.6	74.5	87	-0.473	AT5G03650.1	SBE2.2, starch branching enzyme 2.2	starch metabolism	VI) other metabolic pathways	plastid	2348.58	371.10
[show peptides]	38	84	3.5	2	<0.01	76.5	74.5	87	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2348.58	371.10
[show peptides]	38	83	6.3	2	<0.01	42.8	74.5	87	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	83	7.9	2	<0.01	34.3	74.5	87	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	83	7.1	2	<0.01	37.7	74.5	87	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	83	7.1	2	<0.01	37.7	74.5	87	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	59	2.3	1	<0.01	52.0	74.5	87	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	59	2.5	1	<0.01	49.1	74.5	87	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	59	2.5	1	<0.01	48.5	74.5	87	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	39	1218	31.8	20	<0.01	88.7	75.1	170	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 1)	CR88	V) protein folding & processing	plastid	1988.08	367.74
[show peptides]	39	1218	31.9	20	<0.01	88.3	75.1	170	-0.543	AT2G04030.2	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 2)	CR88	V) protein folding & processing	plastid	1988.08	367.74
[show peptides]	39	547	14.2	12	<0.01	102.1	75.1	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08	367.74
[show peptides]	39	140	4.7	3	<0.01	68.3	75.1	170	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08	367.74
[show peptides]	39	92	5.7	3	<0.01	86.1	75.1	170	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1988.08	367.74
[show peptides]	39	42	2.3	1	<0.01	52.0	75.1	170	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1988.08	367.74
[show peptides]	39	42	0.9	1	<0.01	108.6	75.1	170	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08	367.74
[show peptides]	39	42	2.5	1	<0.01	49.1	75.1	170	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1988.08	367.74
[show peptides]	39	42	2.5	1	<0.01	48.5	75.1	170	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1988.08	367.74
[show peptides]	40	853	20.3	17	<0.01	102.1	74.5	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2224.04	370.99
[show peptides]	40	804	26.8	16	<0.01	88.7	74.5	110	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 1)	CR88	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	40	804	26.9	16	<0.01	88.3	74.5	110	-0.543	AT2G04030.2	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 2)	CR88	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	40	370	15.8	7	<0.01	55.3	74.5	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2224.04	370.99
[show peptides]	40	298	17.3	7	<0.01	42.9	74.5	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	290	17.6	5	<0.01	28.2	74.5	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2224.04	370.99
[show peptides]	40	237	9.2	6	<0.01	86.1	74.5	110	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2224.04	370.99
[show peptides]	40	202	7.0	4	<0.01	80.0	74.5	110	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	202	7.0	4	<0.01	79.8	74.5	110	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	158	6.9	5	<0.01	103.5	74.5	110	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	40	68	2.3	1	<0.01	52.0	74.5	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	68	2.5	1	<0.01	49.1	74.5	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	68	2.5	1	<0.01	48.5	74.5	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	38	1.1	1	<0.01	76.5	74.5	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	41	596	21.5	13	<0.01	56.0	74.3	270	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	422	9.9	6	<0.01	88.7	74.3	270	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 1)	CR88	V) protein folding & processing	plastid	1654.73	372.25
[show peptides]	41	422	9.9	6	<0.01	88.3	74.3	270	-0.543	AT2G04030.2	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 2)	CR88	V) protein folding & processing	plastid	1654.73	372.25
[show peptides]	41	358	12.5	6	<0.01	51.9	74.3	270	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	229	10.8	4	<0.01	39.5	74.3	270	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	161	11.3	3	<0.01	35.4	74.3	270	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	135	7.3	3	<0.01	55.3	74.3	270	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	89	5.1	2	<0.01	38.9	74.3	270	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	35	3.8	1	<0.05	42.8	74.3	270	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	41	35	2.8	1	<0.05	68.3	74.3	270	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1654.73	372.25
[show peptides]	41	35	4.7	1	<0.05	34.3	74.3	270	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	41	35	4.3	1	<0.05	37.7	74.3	270	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	41	35	4.3	1	<0.05	37.7	74.3	270	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	42	235	3.7	4	<0.01	82.5	72.0	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	385.71
[show peptides]	42	102	2.3	2	<0.01	83.2	72.0	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	385.71
[show peptides]	43	195	6.1	5	<0.01	83.2	71.9	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	385.97
[show peptides]	43	101	3.5	2	<0.01	82.5	71.9	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	385.97
[show peptides]	44	1319	38.2	20	<0.01	63.8	64.6	790	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	44	1319	38.2	20	<0.01	63.8	64.6	790	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	44	1254	37.4	19	<0.01	63.3	64.6	790	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	44	340	12.6	5	<0.01	62.1	64.6	790	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	45	425	25.3	8	<0.01	53.0	63.3	340	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1466.02	444.17
[show peptides]	45	284	7.2	6	<0.01	82.5	63.3	340	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1466.02	444.17
[show peptides]	45	263	7.2	6	<0.01	83.2	63.3	340	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1466.02	444.17
[show peptides]	45	239	10.5	4	<0.01	55.3	63.3	340	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1466.02	444.17
[show peptides]	46	1011	31.4	18	<0.01	80.0	70.4	110	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	1011	31.5	18	<0.01	79.8	70.4	110	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	834	28.7	14	<0.01	75.2	70.4	110	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	773	27.8	12	<0.01	55.3	70.4	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	516	17.8	12	<0.01	76.5	70.4	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	431	14.8	10	<0.01	77.0	70.4	110	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	362	19.5	8	<0.01	42.9	70.4	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	298	17.3	7	<0.01	43.0	70.4	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	250	11.2	4	<0.01	28.2	70.4	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	212	12.1	4	<0.01	28.6	70.4	110	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	193	10.2	6	<0.01	74.2	70.4	110	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	180	5.6	4	<0.01	102.1	70.4	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2217.79	395.44
[show peptides]	46	162	8.8	4	<0.01	53.9	70.4	110	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	75	3.3	2	<0.01	61.1	70.4	110	-0.404	AT5G26000.1	TGG1, BGLU38, thioglucoside glucohydrolase 1	glucosinolate metabolism	VI) other metabolic pathways	vacuole	2217.79	395.44
[show peptides]	46	33	1.5	1	<0.05	79.0	70.4	110	-0.081	AT1G79600.1	Protein kinase superfamily protein (AT1G79600.1)	protein modification	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	47	801	26.8	14	<0.01	55.3	63.1	320	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	614	23.3	10	<0.01	53.9	63.1	320	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	267	5.4	5	<0.01	82.5	63.1	320	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	240	6.7	6	<0.01	83.2	63.1	320	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	217	12.5	5	<0.01	53.0	63.1	320	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1514.41	445.53
[show peptides]	48	371	13.1	7	<0.01	80.0	70.0	100	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2279.82	397.95
[show peptides]	48	371	13.1	7	<0.01	79.8	70.0	100	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2279.82	397.95
[show peptides]	48	146	7.9	4	<0.01	76.5	70.0	100	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2279.82	397.95
[show peptides]	49	2310	53.0	34	<0.01	80.0	69.9	89	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	2310	53.1	34	<0.01	79.8	69.9	89	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	899	20.6	15	<0.01	77.0	69.9	89	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2336.13	398.37
[show peptides]	49	849	20.8	15	<0.01	76.5	69.9	89	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2336.13	398.37
[show peptides]	49	69	3.3	1	<0.01	42.8	69.9	89	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	69	4.1	1	<0.01	34.3	69.9	89	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	69	3.7	1	<0.01	37.7	69.9	89	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	69	3.7	1	<0.01	37.7	69.9	89	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	67	2.3	1	<0.01	52.0	69.9	89	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	67	2.5	1	<0.01	49.1	69.9	89	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	67	2.5	1	<0.01	48.5	69.9	89	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	50	126	5.7	3	<0.01	76.5	68.9	56	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2520.43	404.74
[show peptides]	51	1724	50.9	28	<0.01	53.0	66.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	479	59.1	9	<0.01	20.3	66.1	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	429	48.9	8	<0.01	20.2	66.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	427	48.9	8	<0.01	20.8	66.1	430	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	187	4.6	4	<0.01	82.5	66.1	430	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1357.29	423.80
[show peptides]	51	55	1.1	1	<0.01	83.2	66.1	430	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1357.29	423.80
[show peptides]	52	218	3.7	4	<0.01	82.5	64.1	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	52	182	4.4	4	<0.01	83.2	64.1	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	52	44	1.6	1	<0.01	85.2	64.1	1500	0.577	ATCG01010.1	NdhF	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	52	36	1.5	1	<0.05	65.7	64.1	1500	-0.358	AT1G16720.1	HCF173, high chlorophyll fluorescence phenotype 173	g) auxiliary proteins	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	53	2313	56.2	34	<0.01	63.8	60.4	790	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	2313	56.2	34	<0.01	63.8	60.4	790	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	2285	42.7	29	<0.01	62.1	60.4	790	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	2134	54.0	32	<0.01	63.3	60.4	790	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	67	3.1	1	<0.01	38.9	60.4	790	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	866.61	481.95
[show peptides]	53	33	1.8	1	<0.05	44.1	60.4	790	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	866.61	481.95
[show peptides]	54	198	3.7	4	<0.01	82.5	63.2	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	444.72
[show peptides]	54	82	2.3	2	<0.01	83.2	63.2	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	444.72
[show peptides]	55	1504	42.3	24	<0.01	75.2	64.8	110	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	1176	37.0	21	<0.01	74.2	64.8	110	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	1008	31.6	18	<0.01	76.8	64.8	110	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	792	28.0	15	<0.01	65.5	64.8	110	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2222.84	432.57
[show peptides]	55	708	19.7	13	<0.01	73.2	64.8	110	-0.125	AT1G06430.1	FtsH8, FtsH protease 8	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	478	17.3	11	<0.01	76.5	64.8	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	184	7.8	3	<0.01	42.9	64.8	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	147	11.2	3	<0.01	28.2	64.8	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2222.84	432.57
[show peptides]	55	117	7.7	3	<0.01	55.3	64.8	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2222.84	432.57
[show peptides]	55	111	7.5	3	<0.01	43.0	64.8	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	86	2.8	2	<0.01	73.8	64.8	110	-0.295	AT5G67030.1	ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP, zeaxanthin epoxidase (ZEP) (ABA1)	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2222.84	432.57
[show peptides]	55	65	2.3	1	<0.01	52.0	64.8	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	65	2.5	1	<0.01	49.1	64.8	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	65	2.5	1	<0.01	48.5	64.8	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	59	1.6	1	<0.01	102.1	64.8	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2222.84	432.57
[show peptides]	55	51	1.5	1	<0.01	78.7	64.8	110	-0.244	AT3G05350.1	Metallopeptidase M24 family protein	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	56	537	22.7	9	<0.01	38.9	60.1	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	463	23.8	8	<0.01	35.4	60.1	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	419	16.0	7	<0.01	55.3	60.1	260	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	315	11.6	5	<0.01	39.5	60.1	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	218	8.2	4	<0.01	63.3	60.1	260	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	1663.74	469.72
[show peptides]	56	212	10.4	4	<0.01	53.9	60.1	260	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	178	6.9	3	<0.01	56.0	60.1	260	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	163	5.3	3	<0.01	62.1	60.1	260	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	1663.74	469.72
[show peptides]	56	147	5.3	2	<0.01	51.9	60.1	260	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	77	5.6	1	<0.01	24.2	60.1	260	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	57	2099	63.5	32	<0.01	53.0	53.5	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	532.32
[show peptides]	57	52	2.8	1	<0.01	55.3	53.5	430	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1357.29	532.32
[show peptides]	57	45	6.7	1	<0.01	20.2	53.5	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	532.32
[show peptides]	58	2136	57.4	32	<0.01	67.1	60.9	47	-0.159	AT4G24620.1	PGI1, PGI, phosphoglucose isomerase 1	starch metabolism	VI) other metabolic pathways	plastid	2579.37	463.38
[show peptides]	58	1891	52.3	29	<0.01	63.8	60.9	47	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	1891	52.3	29	<0.01	63.8	60.9	47	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	1671	50.8	27	<0.01	63.3	60.9	47	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	684	20.7	12	<0.01	68.0	60.9	47	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2579.37	463.38
[show peptides]	58	639	24.9	11	<0.01	62.1	60.9	47	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	71	3.4	2	<0.01	80.0	60.9	47	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	71	3.4	2	<0.01	79.8	60.9	47	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	52	2.3	1	<0.01	52.0	60.9	47	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	52	2.5	1	<0.01	49.1	60.9	47	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	52	2.5	1	<0.01	48.5	60.9	47	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	51	1.8	1	<0.01	65.1	60.9	47	-0.103	AT3G22960.1	PKP1, PKP-ALPHA, Pyruvate kinase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2579.37	463.38
[show peptides]	58	39	1.2	1	<0.01	64.7	60.9	47	-0.401	AT2G38910.1	CPK20, calcium-dependent protein kinase 20	protein modification	V) protein folding & processing	cytosol	2579.37	463.38
[show peptides]	58	36	2.6	1	<0.01	34.6	60.9	47	-0.510	AT5G10880.1	tRNA synthetase-related / tRNA ligase-related	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid new	2579.37	463.38
[show peptides]	58	36	2.6	1	<0.01	55.3	60.9	47	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2579.37	463.38
[show peptides]	59	208	9.4	5	<0.05	80.0	60.7	94	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2310.24	464.87
[show peptides]	59	208	9.5	5	<0.05	79.8	60.7	94	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2310.24	464.87
[show peptides]	60	1122	36.7	19	<0.05	62.1	61.8	82	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	867	28.5	15	<0.05	63.8	61.8	82	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	867	28.5	15	<0.05	63.8	61.8	82	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	763	26.2	13	<0.05	63.3	61.8	82	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	522	15.9	9	<0.05	68.0	61.8	82	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2372.52	455.96
[show peptides]	60	492	6.8	8	<0.05	176.8	61.8	82	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2372.52	455.96
[show peptides]	60	491	6.7	8	<0.05	179.9	61.8	82	-0.148	AT5G04140.2	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2372.52	455.96
[show peptides]	60	414	14.2	9	<0.05	80.0	61.8	82	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	414	14.2	9	<0.05	79.8	61.8	82	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	9.0	3	<0.05	42.8	61.8	82	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	11.4	3	<0.05	34.3	61.8	82	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	10.3	3	<0.05	37.7	61.8	82	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	10.3	3	<0.05	37.7	61.8	82	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	111	5.4	3	<0.05	67.3	61.8	82	-0.215	AT1G70820.1	Phosphoglucomutase, putative / glucose phosphomutase, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2372.52	455.96
[show peptides]	60	72	3.7	2	<0.05	68.3	61.8	82	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2372.52	455.96
[show peptides]	60	70	2.0	1	<0.05	66.8	61.8	82	-0.215	AT2G47940.1	Deg2, DegP2, DegP protease 2 (Gene model 1)	proteases	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	70	2.0	1	<0.05	66.7	61.8	82	-0.209	AT2G47940.2	Deg2, DegP2, DegP protease 2 (Gene model 2)	proteases	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	64	2.3	1	<0.05	52.0	61.8	82	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	64	2.5	1	<0.05	49.1	61.8	82	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	64	2.5	1	<0.05	48.5	61.8	82	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	61	2205	48.2	32	<0.01	75.2	61.8	70	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	1641	37.6	25	<0.01	76.8	61.8	70	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	571	20.9	13	<0.01	76.5	61.8	70	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	477	18.6	11	<0.01	73.8	61.8	70	-0.295	AT5G67030.1	ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP, zeaxanthin epoxidase (ZEP) (ABA1)	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2436.51	455.86
[show peptides]	61	444	19.6	11	<0.01	74.2	61.8	70	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	440	16.7	10	<0.01	80.0	61.8	70	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2436.51	455.86
[show peptides]	61	440	16.8	10	<0.01	79.8	61.8	70	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2436.51	455.86
[show peptides]	61	396	16.3	10	<0.01	77.0	61.8	70	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	146	2.6	3	<0.01	80.8	61.8	70	0.615	AT1G15690.1	AVP1, ATAVP3, AVP-3, AtVHP1;1, Pyrophosphate-energized vacuolar membrane proton pump 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	vacuole	2436.51	455.86
[show peptides]	61	118	5.8	3	<0.01	79.0	61.8	70	-0.081	AT1G79600.1	Protein kinase superfamily protein (AT1G79600.1)	protein modification	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	106	4.8	2	<0.01	65.5	61.8	70	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2436.51	455.86
[show peptides]	61	76	2.9	2	<0.01	77.5	61.8	70	-0.011	AT1G71810.1	Protein kinase superfamily protein (AT1G71810.1)	protein modification	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	62	55	1.8	1	<0.01	64.9	60.3	56	-0.101	AT3G23940.1	Dehydratase family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2522.17	468.01
[show peptides]	62	55	1.8	1	<0.01	64.7	60.3	56	-0.107	AT3G23940.2	Dehydratase family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2522.17	468.01
[show peptides]	63	637	27.4	12	<0.01	55.3	56.7	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2223.06	500.06
[show peptides]	63	400	27.3	9	<0.01	53.9	56.7	110	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2223.06	500.06
[show peptides]	63	77	6.7	2	<0.01	28.2	56.7	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2223.06	500.06
[show peptides]	64	1103	35.5	16	<0.01	53.9	58.7	540	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	960	36.1	18	<0.01	53.0	58.7	540	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1155.03	481.95
[show peptides]	64	846	26.6	13	<0.01	55.3	58.7	540	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	282	5.4	5	<0.01	82.5	58.7	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	244	12.2	4	<0.01	38.9	58.7	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	156	7.9	3	<0.01	39.5	58.7	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	120	3.3	3	<0.01	83.2	58.7	540	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	114	4.7	2	<0.01	56.0	58.7	540	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	66	3.4	1	<0.01	51.9	58.7	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	65	1923	59.0	26	<0.01	53.9	56.2	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	505.17
[show peptides]	65	1766	41.6	24	<0.01	55.3	56.2	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	505.17
[show peptides]	65	172	6.3	3	<0.01	54.4	56.2	300	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1562.91	505.17
[show peptides]	65	53	1.6	1	<0.01	82.5	56.2	300	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1562.91	505.17
[show peptides]	65	35	2.1	1	<0.05	41.9	56.2	300	0.160	AT2G26360.1	Mitochondrial substrate carrier family protein	other transporters	III) transport	mitochondrion	1562.91	505.17
[show peptides]	66	2209	65.4	35	<0.01	57.4	56.8	160	-0.328	AT4G37930.1	SHM1, STM, SHMT1, serine transhydroxymethyltransferase 1	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2022.96	499.66
[show peptides]	66	1428	37.3	19	<0.01	55.3	56.8	160	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2022.96	499.66
[show peptides]	66	1255	49.4	18	<0.01	53.9	56.8	160	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2022.96	499.66
[show peptides]	66	875	40.0	14	<0.01	54.4	56.8	160	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2022.96	499.66
[show peptides]	66	388	18.1	9	<0.01	58.2	56.8	160	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	171	7.3	3	<0.01	61.2	56.8	160	-0.208	AT5G03940.1	SRP54CP, chloroplast signal recognition particle	protein transporters	III) transport	plastid	2022.96	499.66
[show peptides]	66	158	7.3	3	<0.01	49.5	56.8	160	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2022.96	499.66
[show peptides]	66	144	6.4	3	<0.01	61.7	56.8	160	-0.359	AT5G55220.1	Trigger factor type chaperone family protein	other HSP	V) protein folding & processing	plastid	2022.96	499.66
[show peptides]	66	138	8.7	3	<0.01	60.6	56.8	160	-0.281	AT2G24820.1	TIC55-II, translocon at the inner envelope membrane of chloroplasts 55-II	protein transporters	III) transport	plastid	2022.96	499.66
[show peptides]	66	124	7.3	3	<0.01	53.0	56.8	160	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	51	2.3	1	<0.01	52.0	56.8	160	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	51	1.5	1	<0.01	57.7	56.8	160	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	51	2.5	1	<0.01	49.1	56.8	160	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	51	2.5	1	<0.01	48.5	56.8	160	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	49	2.4	1	<0.01	63.8	56.8	160	-0.071	AT3G58610.1	Ketol-acid reductoisomerase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	49	2.4	1	<0.01	63.8	56.8	160	-0.071	AT3G58610.2	Ketol-acid reductoisomerase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	49	2.4	1	<0.01	63.8	56.8	160	-0.071	AT3G58610.3	Ketol-acid reductoisomerase (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	67	294	13.6	6	<0.01	53.0	56.7	1700	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	303.56	500.81
[show peptides]	67	79	5.0	2	<0.01	53.9	56.7	1700	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	303.56	500.81
[show peptides]	67	64	2.4	1	<0.01	49.5	56.7	1700	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	303.56	500.81
[show peptides]	68	891	35.3	18	<0.01	53.0	56.5	840	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	827.29	502.17
[show peptides]	68	618	17.3	8	<0.01	63.8	56.5	840	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	827.29	502.17
[show peptides]	68	618	17.3	8	<0.01	63.8	56.5	840	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	827.29	502.17
[show peptides]	68	550	18.1	8	<0.01	62.1	56.5	840	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	827.29	502.17
[show peptides]	69	405	16.7	8	<0.01	53.0	56.0	1500	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	419.62	507.30
[show peptides]	69	119	7.5	3	<0.01	55.3	56.0	1500	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	419.62	507.30
[show peptides]	69	64	2.4	1	<0.01	49.5	56.0	1500	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	419.62	507.30
[show peptides]	69	32	1.1	1	<0.05	82.5	56.0	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	507.30
[show peptides]	70	2153	59.0	27	<0.01	53.9	55.5	540	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	1259	42.2	22	<0.01	53.0	55.5	540	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1155.03	511.79
[show peptides]	70	1044	32.9	15	<0.01	55.3	55.5	540	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	365	12.6	6	<0.01	56.0	55.5	540	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	201	4.6	4	<0.01	82.5	55.5	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	183	6.8	2	<0.01	38.9	55.5	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	180	9.9	3	<0.01	51.9	55.5	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	38	1.7	1	<0.05	46.1	55.5	540	-0.216	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1155.03	511.79
[show peptides]	70	36	2.5	1	<0.05	39.5	55.5	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	71	2196	59.0	27	<0.01	53.9	55.7	90	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	967	25.2	16	<0.01	67.1	55.7	90	0.065	AT4G16155.1	Dihydrolipoyl dehydrogenases	antioxidants	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	603	25.0	11	<0.01	55.3	55.7	90	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	546	17.2	9	<0.01	60.8	55.7	90	-0.011	AT3G16950.1	PDH-E3, pyruvate dehydrogenase subunit E3 (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	546	15.7	9	<0.01	66.7	55.7	90	-0.088	AT3G16950.2	PDH-E3, pyruvate dehydrogenase subunit E3 (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	317	14.3	6	<0.01	54.4	55.7	90	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2329.31	510.63
[show peptides]	71	199	16.4	5	<0.01	42.5	55.7	90	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	161	18.0	4	<0.01	34.3	55.7	90	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	161	16.3	4	<0.01	37.7	55.7	90	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	161	16.3	4	<0.01	37.7	55.7	90	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	143	5.0	2	<0.01	61.2	55.7	90	-0.208	AT5G03940.1	SRP54CP, chloroplast signal recognition particle	protein transporters	III) transport	plastid	2329.31	510.63
[show peptides]	71	141	6.7	3	<0.01	49.4	55.7	90	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	126	7.1	3	<0.01	58.2	55.7	90	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	125	7.3	3	<0.01	49.5	55.7	90	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2329.31	510.63
[show peptides]	71	81	5.2	2	<0.01	53.0	55.7	90	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	44	4.5	2	<0.01	49.1	55.7	90	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	44	4.5	2	<0.01	48.5	55.7	90	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	42	3.8	1	<0.01	28.7	55.7	90	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	40	3.0	1	<0.01	28.2	55.7	90	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	72	952	26.6	14	<0.01	49.4	53.7	66	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2464.24	530.50
[show peptides]	72	828	37.8	14	<0.01	53.9	53.7	66	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2464.24	530.50
[show peptides]	72	807	33.9	14	<0.01	54.0	53.7	66	-0.042	AT1G48030.1	mtLPD1, mitochondrial lipoamide dehydrogenase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2464.24	530.50
[show peptides]	72	807	33.9	14	<0.01	54.0	53.7	66	-0.042	AT1G48030.2	mtLPD1, mitochondrial lipoamide dehydrogenase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2464.24	530.50
[show peptides]	72	607	26.8	12	<0.01	51.8	53.7	66	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	563	16.0	10	<0.01	52.0	53.7	66	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	563	17.0	10	<0.01	49.1	53.7	66	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	563	17.2	10	<0.01	48.5	53.7	66	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	353	12.7	6	<0.01	58.4	53.7	66	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	353	12.3	6	<0.01	60.8	53.7	66	-0.165	AT5G35360.3	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	257	8.2	4	<0.01	58.6	53.7	66	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	257	8.2	4	<0.01	58.6	53.7	66	-0.262	AT4G23100.3	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	241	8.9	5	<0.01	80.0	53.7	66	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	241	8.9	6	<0.01	79.8	53.7	66	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	189	10.3	4	<0.01	56.2	53.7	66	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	189	12.0	4	<0.01	48.1	53.7	66	-0.253	AT4G33510.2	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	170	9.8	4	<0.01	53.3	53.7	66	-0.183	AT1G23310.1	GGT1, AOAT1, GGAT1, glutamate:glyoxylate aminotransferase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	peroxisome	2464.24	530.50
[show peptides]	72	170	10.7	4	<0.01	48.6	53.7	66	-0.159	AT1G23310.2	GGT1, AOAT1, GGAT1, glutamate:glyoxylate aminotransferase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	peroxisome	2464.24	530.50
[show peptides]	72	162	7.1	3	<0.01	55.2	53.7	66	-0.123	AT3G22200.1	POP2, GABA-T, HER1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (Gene model	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	162	7.0	3	<0.01	56.4	53.7	66	-0.127	AT3G22200.2	POP2, GABA-T, HER1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (Gene model	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	132	10.1	4	<0.01	55.3	53.7	66	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2464.24	530.50
[show peptides]	72	114	4.7	4	<0.01	76.5	53.7	66	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2464.24	530.50
[show peptides]	72	108	6.7	2	<0.01	27.8	53.7	66	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	96	6.3	2	<0.01	55.0	53.7	66	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	91	4.8	2	<0.01	57.0	53.7	66	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2464.24	530.50
[show peptides]	72	78	2.2	1	<0.01	54.2	53.7	66	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	64	2.2	1	<0.01	50.3	53.7	66	-0.357	AT1G20010.1	TUB5, tubulin beta-5 chain	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2464.24	530.50
[show peptides]	72	60	3.6	2	<0.01	57.7	53.7	66	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	55	2.5	1	<0.01	44.5	53.7	66	-0.977	AT1G06190.1	Rho termination factor (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2464.24	530.50
[show peptides]	72	55	3.4	1	<0.01	32.6	53.7	66	-0.905	AT1G06190.2	Rho termination factor (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2464.24	530.50
[show peptides]	72	45	2.5	1	<0.01	52.8	53.7	66	-0.322	AT1G32500.1	ATNAP6, NAP6, non-intrinsic ABC protein 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2464.24	530.50
[show peptides]	72	40	3.1	1	<0.01	53.3	53.7	66	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	40	3.1	1	<0.01	53.3	53.7	66	-0.278	AT5G41670.2	6-phosphogluconate dehydrogenase family protein (AT5G41670.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	38	2.0	1	<0.05	61.0	53.7	66	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	37	3.0	1	<0.05	55.1	53.7	66	-0.166	AT5G23010.1	MAM1, IMS3, methylthioalkylmalate synthase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	35	1.7	1	<0.05	76.8	53.7	66	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2464.24	530.50
[show peptides]	72	33	2.1	1	<0.05	49.9	53.7	66	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2464.24	530.50
[show peptides]	72	33	2.5	1	<0.05	42.6	53.7	66	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2464.24	530.50
[show peptides]	73	938	38.5	16	<0.01	51.8	53.7	47	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	930	39.5	15	<0.01	52.0	53.7	47	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	930	41.9	15	<0.01	49.1	53.7	47	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	930	42.4	15	<0.01	48.5	53.7	47	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	899	23.6	12	<0.01	49.4	53.7	47	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2582.99	530.77
[show peptides]	73	523	22.2	10	<0.01	58.4	53.7	47	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	523	21.4	10	<0.01	60.8	53.7	47	-0.165	AT5G35360.3	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	403	18.1	8	<0.01	51.6	53.7	47	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2582.99	530.77
[show peptides]	73	335	16.6	7	<0.01	49.8	53.7	47	-0.237	AT2G44640.1	AT2G44640.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2582.99	530.77
[show peptides]	73	325	10.5	6	<0.01	58.6	53.7	47	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	325	10.5	6	<0.01	58.6	53.7	47	-0.262	AT4G23100.3	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	299	14.3	7	<0.01	54.2	53.7	47	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	274	17.3	6	<0.01	53.9	53.7	47	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2582.99	530.77
[show peptides]	73	259	9.5	4	<0.01	56.2	53.7	47	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	215	21.3	5	<0.01	27.6	53.7	47	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	206	14.9	5	<0.01	55.0	53.7	47	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	188	8.6	3	<0.01	53.3	53.7	47	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2582.99	530.77
[show peptides]	73	188	8.6	3	<0.01	53.3	53.7	47	-0.278	AT5G41670.2	6-phosphogluconate dehydrogenase family protein (AT5G41670.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2582.99	530.77
[show peptides]	73	181	12.6	5	<0.01	52.8	53.7	47	-0.322	AT1G32500.1	ATNAP6, NAP6, non-intrinsic ABC protein 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2582.99	530.77
[show peptides]	73	137	10.3	4	<0.01	55.3	53.7	47	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2582.99	530.77
[show peptides]	73	129	4.8	2	<0.01	57.0	53.7	47	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2582.99	530.77
[show peptides]	73	117	3.8	2	<0.01	58.5	53.7	47	-0.090	AT5G57030.1	LUT2, Lycopene beta/epsilon cyclase protein	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	115	3.5	3	<0.01	76.5	53.7	47	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2582.99	530.77
[show peptides]	73	114	5.9	3	<0.01	61.0	53.7	47	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	106	3.8	2	<0.01	59.9	53.7	47	-0.330	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G02150.1)	TPR proteins	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	104	4.8	2	<0.01	49.9	53.7	47	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2582.99	530.77
[show peptides]	73	104	5.7	2	<0.01	42.6	53.7	47	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2582.99	530.77
[show peptides]	73	90	4.4	2	<0.01	56.7	53.7	47	-0.131	AT5G48300.1	ADG1, APS1, ADP glucose pyrophosphorylase 1	starch metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	81	3.6	2	<0.01	57.7	53.7	47	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	78	4.2	2	<0.01	58.0	53.7	47	-0.312	AT4G39980.1	DHS1, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	64	3.1	1	<0.01	54.6	53.7	47	-0.193	AT1G14030.1	Rubisco methyltransferase family protein (AT1G14030.1)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	60	6.7	2	<0.01	44.5	53.7	47	-0.977	AT1G06190.1	Rho termination factor (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2582.99	530.77
[show peptides]	73	60	9.2	2	<0.01	32.6	53.7	47	-0.905	AT1G06190.2	Rho termination factor (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2582.99	530.77
[show peptides]	73	49	1.8	1	<0.01	57.6	53.7	47	-0.274	AT5G14260.1	Rubisco methyltransferase family protein (AT5G14260.1)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	49	1.8	1	<0.01	57.6	53.7	47	-0.274	AT5G14260.2	Rubisco methyltransferase family protein (AT5G14260.2)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	49	1.8	1	<0.01	57.6	53.7	47	-0.274	AT5G14260.3	Rubisco methyltransferase family protein (AT5G14260.3)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	45	2.1	1	<0.01	55.8	53.7	47	-0.020	AT1G48860.1	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	45	2.2	1	<0.01	52.4	53.7	47	0.063	AT1G48860.2	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	44	2.2	1	<0.01	50.3	53.7	47	-0.357	AT1G20010.1	TUB5, tubulin beta-5 chain	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2582.99	530.77
[show peptides]	74	1293	42.7	20	<0.01	53.3	53.7	33	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2693.79	530.82
[show peptides]	74	1293	42.7	20	<0.01	53.3	53.7	33	-0.278	AT5G41670.2	6-phosphogluconate dehydrogenase family protein (AT5G41670.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2693.79	530.82
[show peptides]	74	1106	39.0	16	<0.01	53.4	53.7	33	-0.272	AT1G64190.1	6-phosphogluconate dehydrogenase family protein (AT1G64190.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79	530.82
[show peptides]	74	759	30.4	15	<0.01	51.8	53.7	33	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	725	27.6	13	<0.01	52.0	53.7	33	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	725	29.4	13	<0.01	49.1	53.7	33	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	725	29.7	13	<0.01	48.5	53.7	33	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	641	23.5	11	<0.01	58.4	53.7	33	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	641	22.7	11	<0.01	60.8	53.7	33	-0.165	AT5G35360.3	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	538	19.2	10	<0.01	58.6	53.7	33	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	538	19.2	10	<0.01	58.6	53.7	33	-0.262	AT4G23100.3	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	354	19.8	9	<0.01	54.2	53.7	33	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	297	12.0	5	<0.01	56.2	53.7	33	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	297	14.1	5	<0.01	48.1	53.7	33	-0.253	AT4G33510.2	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	268	20.0	6	<0.01	28.0	53.7	33	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2693.79	530.82
[show peptides]	74	245	13.8	5	<0.01	55.0	53.7	33	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	240	27.7	6	<0.01	27.6	53.7	33	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	230	11.4	5	<0.01	53.0	53.7	33	-0.114	AT3G57610.1	ADSS, adenylosuccinate synthase	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2693.79	530.82
[show peptides]	74	228	8.9	4	<0.01	57.0	53.7	33	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79	530.82
[show peptides]	74	177	8.6	4	<0.01	57.7	53.7	33	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	149	7.5	3	<0.01	55.3	53.7	33	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2693.79	530.82
[show peptides]	74	131	5.8	3	<0.01	49.8	53.7	33	-0.237	AT2G44640.1	AT2G44640.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2693.79	530.82
[show peptides]	74	123	3.8	2	<0.01	58.5	53.7	33	-0.090	AT5G57030.1	LUT2, Lycopene beta/epsilon cyclase protein	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	115	7.4	3	<0.01	51.6	53.7	33	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2693.79	530.82
[show peptides]	74	96	3.3	2	<0.01	57.6	53.7	33	-0.274	AT5G14260.1	Rubisco methyltransferase family protein (AT5G14260.1)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	96	3.3	2	<0.01	57.6	53.7	33	-0.274	AT5G14260.2	Rubisco methyltransferase family protein (AT5G14260.2)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	96	3.3	2	<0.01	57.6	53.7	33	-0.274	AT5G14260.3	Rubisco methyltransferase family protein (AT5G14260.3)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	72	6.7	2	<0.01	28.2	53.7	33	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2693.79	530.82
[show peptides]	74	42	3.0	1	<0.05	55.1	53.7	33	-0.166	AT5G23010.1	MAM1, IMS3, methylthioalkylmalate synthase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	39	1.8	1	<0.05	61.0	53.7	33	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	36	2.9	1	<0.05	54.7	53.7	33	-0.409	AT4G32770.1	VTE1, ATSDX1, tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defect	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79	530.82
[show peptides]	75	2781	74.5	31	<0.01	53.9	53.1	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	536.92
[show peptides]	75	1446	36.5	19	<0.01	55.3	53.1	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	536.92
[show peptides]	75	76	3.5	2	<0.01	59.8	53.1	300	-0.150	AT4G18440.1	L-Aspartase-like family protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1562.91	536.92
[show peptides]	75	32	5.5	1	<0.05	16.8	53.1	300	-0.897	AT3G62420.1	Leucine zipper motif 53	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	1562.91	536.92
[show peptides]	76	526	23.1	10	<0.01	51.6	50.9	110	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2217.56	562.01
[show peptides]	76	415	17.9	8	<0.01	52.0	50.9	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2217.56	562.01
[show peptides]	76	415	19.1	8	<0.01	49.1	50.9	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2217.56	562.01
[show peptides]	76	415	19.3	8	<0.01	48.5	50.9	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2217.56	562.01
[show peptides]	76	88	10.9	2	<0.01	27.5	50.9	110	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2217.56	562.01
[show peptides]	77	882	29.1	18	<0.01	51.0	51.2	1700	-0.238	AT1G15980.1	PnsB1	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	558.45
[show peptides]	77	213	5.5	3	<0.01	51.6	51.2	1700	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	303.56	558.45
[show peptides]	77	35	1.7	1	<0.05	55.6	51.2	1700	-0.345	AT4G20130.1	pTAC14, plastid transcriptionally active 14	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.56	558.45
[show peptides]	78	754	25.8	15	<0.01	56.0	46.6	1000	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	725.81	616.45
[show peptides]	78	265	9.9	4	<0.01	51.9	46.6	1000	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	725.81	616.45
[show peptides]	78	37	3.3	1	<0.05	47.4	46.6	1000	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	725.81	616.45
[show peptides]	78	37	3.3	1	<0.05	47.4	46.6	1000	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	725.81	616.45
[show peptides]	78	37	3.3	1	<0.05	47.4	46.6	1000	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	725.81	616.45
[show peptides]	79	639	19.1	13	<0.01	56.0	46.8	830	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	829.77	613.25
[show peptides]	79	285	9.9	4	<0.01	51.9	46.8	830	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	829.77	613.25
[show peptides]	79	124	3.6	2	<0.01	62.1	46.8	830	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	829.77	613.25
[show peptides]	79	77	5.1	2	<0.01	47.4	46.8	830	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	829.77	613.25
[show peptides]	79	77	5.1	2	<0.01	47.4	46.8	830	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	829.77	613.25
[show peptides]	79	77	5.1	2	<0.01	47.4	46.8	830	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	829.77	613.25
[show peptides]	79	45	1.9	1	<0.01	52.0	46.8	830	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	829.77	613.25
[show peptides]	79	45	2.0	1	<0.01	49.1	46.8	830	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	829.77	613.25
[show peptides]	79	45	2.0	1	<0.01	48.5	46.8	830	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	829.77	613.25
[show peptides]	80	455	18.2	10	<0.01	51.0	51.3	1500	-0.238	AT1G15980.1	PnsB1	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	556.82
[show peptides]	80	43	2.9	1	<0.05	51.6	51.3	1500	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	419.62	556.82
[show peptides]	81	976	27.0	20	<0.01	56.0	46.8	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	373	11.0	6	<0.01	51.9	46.8	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	195	10.8	4	<0.01	39.5	46.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	180	10.1	4	<0.01	55.3	46.8	560	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	138	8.2	3	<0.01	53.9	46.8	560	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	103	2.7	2	<0.01	82.5	46.8	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	87	5.1	2	<0.01	38.9	46.8	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	48	3.3	1	<0.01	47.4	46.8	560	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1106.40	614.22
[show peptides]	81	48	3.3	1	<0.05	47.4	46.8	560	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1106.40	614.22
[show peptides]	81	48	3.3	1	<0.05	47.4	46.8	560	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1106.40	614.22
[show peptides]	81	39	3.2	1	<0.01	28.0	46.8	560	-0.169	AT5G36970.1	NHL25, NDR1/HIN1-like 25	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1106.40	614.22
[show peptides]	81	35	1.3	1	<0.05	83.2	46.8	560	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	82	2069	62.9	28	<0.01	52.0	50.3	74	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	1424	41.8	19	<0.01	51.6	50.3	74	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2415.33	569.18
[show peptides]	82	615	26.4	10	<0.01	50.1	50.3	74	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	535	21.1	8	<0.01	49.9	50.3	74	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2415.33	569.18
[show peptides]	82	535	24.9	8	<0.01	42.6	50.3	74	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2415.33	569.18
[show peptides]	82	389	19.2	8	<0.01	51.5	50.3	74	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	264	12.3	6	<0.01	80.0	50.3	74	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	264	12.3	6	<0.01	79.8	50.3	74	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	236	10.3	4	<0.01	52.0	50.3	74	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2415.33	569.18
[show peptides]	82	236	9.9	4	<0.01	54.2	50.3	74	-0.089	AT5G62790.2	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2415.33	569.18
[show peptides]	82	134	7.2	3	<0.01	47.4	50.3	74	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	134	7.2	3	<0.01	47.4	50.3	74	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	134	7.2	3	<0.01	47.4	50.3	74	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	115	5.3	2	<0.01	42.5	50.3	74	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	110	4.2	3	<0.01	64.8	50.3	74	0.470	AT3G26570.1	PHT2;1, ORF02, phosphate transporter 2;1 (Gene model 1)	other transporters	III) transport	plastid	2415.33	569.18
[show peptides]	82	110	4.4	3	<0.01	61.4	50.3	74	0.542	AT3G26570.2	PHT2;1, ORF02, phosphate transporter 2;1 (Gene model 2)	other transporters	III) transport	plastid	2415.33	569.18
[show peptides]	82	93	5.7	2	<0.01	50.7	50.3	74	-0.350	AT1G02910.1	LPA1, tetratricopeptide repeat (TPR)-containing protein	g) auxiliary proteins	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	82	75	3.4	1	<0.01	51.9	50.3	74	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	82	70	5.7	2	<0.01	50.4	50.3	74	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	70	6.5	2	<0.01	44.7	50.3	74	-0.216	AT5G46290.2	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	70	5.5	2	<0.01	52.1	50.3	74	-0.146	AT5G46290.3	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	68	2.7	1	<0.01	53.1	50.3	74	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	67	4.1	1	<0.01	34.3	50.3	74	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	67	3.7	1	<0.01	37.7	50.3	74	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	67	3.7	1	<0.01	37.7	50.3	74	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	62	3.5	1	<0.01	48.2	50.3	74	-0.290	AT5G28500.1	AT5G28500.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2415.33	569.18
[show peptides]	82	62	5.6	1	<0.01	29.7	50.3	74	-0.383	AT5G28500.2	AT5G28500.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2415.33	569.18
[show peptides]	82	52	2.4	1	<0.01	53.8	50.3	74	-0.198	AT4G24830.1	Arginosuccinate synthase family (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	52	2.7	1	<0.01	49.0	50.3	74	-0.234	AT4G24830.2	Arginosuccinate synthase family (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	51	2.2	1	<0.01	56.0	50.3	74	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	82	46	3.0	1	<0.01	28.2	50.3	74	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	83	2245	63.1	32	<0.01	52.0	50.1	50	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2562.91	570.64
[show peptides]	83	1184	40.1	19	<0.01	51.6	50.1	50	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2562.91	570.64
[show peptides]	83	655	28.7	11	<0.01	50.1	50.1	50	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2562.91	570.64
[show peptides]	83	526	21.1	8	<0.01	49.9	50.1	50	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2562.91	570.64
[show peptides]	83	526	24.9	8	<0.01	42.6	50.1	50	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2562.91	570.64
[show peptides]	83	420	17.7	7	<0.01	49.0	50.1	50	-0.010	AT5G63890.1	AtHDH, HISN8, HDH, histidinol dehydrogenase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	420	17.2	7	<0.01	50.3	50.1	50	-0.006	AT5G63890.2	AtHDH, HISN8, HDH, histidinol dehydrogenase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	384	15.7	7	<0.01	52.0	50.1	50	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	384	15.1	7	<0.01	54.2	50.1	50	-0.089	AT5G62790.2	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	356	17.2	7	<0.01	53.1	50.1	50	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	325	11.2	6	<0.01	51.5	50.1	50	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	115	7.2	3	<0.01	50.4	50.1	50	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	115	8.1	3	<0.01	44.7	50.1	50	-0.216	AT5G46290.2	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	115	7.0	3	<0.01	52.1	50.1	50	-0.146	AT5G46290.3	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	92	6.7	2	<0.01	50.4	50.1	50	-0.159	AT4G33680.1	AGD2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	89	5.7	2	<0.01	50.7	50.1	50	-0.350	AT1G02910.1	LPA1, tetratricopeptide repeat (TPR)-containing protein	g) auxiliary proteins	I) photophosphorylation	plastid	2562.91	570.64
[show peptides]	83	63	2.7	1	<0.01	54.2	50.1	50	-0.215	AT5G14590.1	Isocitrate/isopropylmalate dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	53	2.5	1	<0.01	51.6	50.1	50	-0.226	AT4G27070.1	TSB2, tryptophan synthase beta-subunit 2	amino acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	84	1857	57.6	26	<0.01	52.0	49.9	24	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2781.61	573.61
[show peptides]	84	891	38.0	17	<0.01	51.6	49.9	24	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	702	26.6	10	<0.01	50.4	49.9	24	0.011	AT5G63570.1	GSA1, glutamate-1-semialdehyde-2,1-aminomutase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	669	26.0	11	<0.01	50.1	49.9	24	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2781.61	573.61
[show peptides]	84	662	22.7	9	<0.01	50.1	49.9	24	-0.001	AT3G48730.1	GSA2, glutamate-1-semialdehyde 2,1-aminomutase 2	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	610	25.2	11	<0.01	52.3	49.9	24	0.006	AT3G09580.1	FAD/NAD(P)-binding oxidoreductase family protein (AT3G09580.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	512	18.4	7	<0.01	49.9	49.9	24	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2781.61	573.61
[show peptides]	84	512	21.7	7	<0.01	42.6	49.9	24	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2781.61	573.61
[show peptides]	84	331	17.5	7	<0.01	52.5	49.9	24	-0.095	AT1G63940.1	MDAR6, monodehydroascorbate reductase 6 (Gene model 1)	antioxidants	VI) other metabolic pathways	mitochondrion	2781.61	573.61
[show peptides]	84	331	17.2	7	<0.01	53.3	49.9	24	-0.089	AT1G63940.2	MDAR6, monodehydroascorbate reductase 6 (Gene model 2)	antioxidants	VI) other metabolic pathways	mitochondrion	2781.61	573.61
[show peptides]	84	331	17.6	7	<0.01	52.1	49.9	24	-0.095	AT1G63940.4	MDAR6, monodehydroascorbate reductase 6 (Gene model 4)	antioxidants	VI) other metabolic pathways	mitochondrion	2781.61	573.61
[show peptides]	84	277	17.3	8	<0.01	51.5	49.9	24	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	272	10.5	5	<0.01	47.4	49.9	24	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	272	10.5	5	<0.01	47.4	49.9	24	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	272	10.5	5	<0.01	47.4	49.9	24	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	130	6.0	3	<0.01	50.5	49.9	24	0.006	AT1G08490.1	ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS, chloroplastic NIFS-like cysteine desulfurase	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	112	4.7	2	<0.01	50.9	49.9	24	-0.205	AT5G54810.1	TSB1, TRPB, TRP2, ATTSB1, tryptophan synthase beta-subunit 1	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	110	5.1	2	<0.01	46.6	49.9	24	-0.057	AT1G50450.1	Saccharopine dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	86	5.2	2	<0.01	52.0	49.9	24	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	86	5.0	2	<0.01	54.2	49.9	24	-0.089	AT5G62790.2	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	78	3.3	1	<0.01	50.7	49.9	24	-0.091	AT2G36250.1	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	78	3.3	1	<0.01	50.7	49.9	24	-0.091	AT2G36250.2	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	65	3.1	1	<0.01	51.0	49.9	24	-0.365	AT5G36170.1	HCF109, ATPRFB, high chlorophyll fluorescent 109 (Gene model 1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	65	3.1	1	<0.01	50.9	49.9	24	-0.375	AT5G36170.2	HCF109, ATPRFB, high chlorophyll fluorescent 109 (Gene model 2)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	65	3.6	1	<0.01	43.2	49.9	24	-0.422	AT5G36170.3	HCF109, ATPRFB, high chlorophyll fluorescent 109 (Gene model 3)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	38	3.9	1	<0.01	27.5	49.9	24	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2781.61	573.61
[show peptides]	85	625	22.0	14	<0.01	56.0	46.6	700	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	951.79	615.85
[show peptides]	85	218	8.2	3	<0.01	51.9	46.6	700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	951.79	615.85
[show peptides]	85	207	8.4	5	<0.01	47.4	46.6	700	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	951.79	615.85
[show peptides]	85	207	8.4	5	<0.01	47.4	46.6	700	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	951.79	615.85
[show peptides]	85	207	8.4	5	<0.01	47.4	46.6	700	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	951.79	615.85
[show peptides]	85	33	1.5	1	<0.05	64.5	46.6	700	-0.776	AT5G17430.1	BBM, Integrase-type DNA-binding superfamily protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	951.79	615.85
[show peptides]	86	1169	39.9	21	<0.01	51.6	50.3	190	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1888.91	569.28
[show peptides]	86	963	39.2	16	<0.01	52.0	50.3	190	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1888.91	569.28
[show peptides]	86	343	10.9	6	<0.01	53.8	50.3	190	-0.198	AT4G24830.1	Arginosuccinate synthase family (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1888.91	569.28
[show peptides]	86	333	14.2	7	<0.01	59.9	50.3	190	0.131	AT3G01120.1	MTO1, CGS, ATCYS1, CGS1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	sulfur metabolism	VI) other metabolic pathways	plastid	1888.91	569.28
[show peptides]	86	283	16.8	7	<0.01	50.1	50.3	190	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1888.91	569.28
[show peptides]	86	153	5.5	3	<0.01	56.0	50.3	190	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1888.91	569.28
[show peptides]	86	51	2.8	1	<0.01	51.8	50.3	190	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1888.91	569.28
[show peptides]	87	1337	43.0	22	<0.01	52.0	50.3	150	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2070.64	568.47
[show peptides]	87	1277	42.0	21	<0.01	51.6	50.3	150	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2070.64	568.47
[show peptides]	87	464	19.3	8	<0.01	50.1	50.3	150	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2070.64	568.47
[show peptides]	87	254	14.0	5	<0.01	53.1	50.3	150	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2070.64	568.47
[show peptides]	87	153	6.1	3	<0.01	53.8	50.3	150	-0.198	AT4G24830.1	Arginosuccinate synthase family (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2070.64	568.47
[show peptides]	87	153	6.7	3	<0.01	49.0	50.3	150	-0.234	AT4G24830.2	Arginosuccinate synthase family (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2070.64	568.47
[show peptides]	87	122	8.0	4	<0.01	50.2	50.3	150	-0.377	AT3G04550.1	AT3G04550.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2070.64	568.47
[show peptides]	87	109	4.3	2	<0.01	51.8	50.3	150	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2070.64	568.47
[show peptides]	87	67	5.1	2	<0.01	47.4	50.3	150	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2070.64	568.47
[show peptides]	87	67	5.1	2	<0.01	47.4	50.3	150	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2070.64	568.47
[show peptides]	87	67	5.1	2	<0.01	47.4	50.3	150	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2070.64	568.47
[show peptides]	87	66	5.1	2	<0.01	55.3	50.3	150	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2070.64	568.47
[show peptides]	87	57	2.6	1	<0.01	56.0	50.3	150	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2070.64	568.47
[show peptides]	88	974	40.8	19	<0.01	51.6	49.7	16	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2887.79	576.49
[show peptides]	88	958	32.7	16	<0.01	52.5	49.7	16	-0.095	AT1G63940.1	MDAR6, monodehydroascorbate reductase 6 (Gene model 1)	antioxidants	VI) other metabolic pathways	mitochondrion	2887.79	576.49
[show peptides]	88	958	32.3	16	<0.01	53.3	49.7	16	-0.089	AT1G63940.2	MDAR6, monodehydroascorbate reductase 6 (Gene model 2)	antioxidants	VI) other metabolic pathways	mitochondrion	2887.79	576.49
[show peptides]	88	958	33.0	16	<0.01	52.1	49.7	16	-0.095	AT1G63940.4	MDAR6, monodehydroascorbate reductase 6 (Gene model 4)	antioxidants	VI) other metabolic pathways	mitochondrion	2887.79	576.49
[show peptides]	88	687	26.6	12	<0.01	52.0	49.7	16	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2887.79	576.49
[show peptides]	88	687	28.3	12	<0.01	49.1	49.7	16	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2887.79	576.49
[show peptides]	88	687	28.6	12	<0.01	48.5	49.7	16	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2887.79	576.49
[show peptides]	88	380	19.9	8	<0.01	51.5	49.7	16	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	262	12.3	6	<0.01	47.4	49.7	16	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	262	12.3	6	<0.01	47.4	49.7	16	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	262	12.3	6	<0.01	47.4	49.7	16	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	144	6.9	3	<0.01	49.4	49.7	16	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2887.79	576.49
[show peptides]	88	105	3.3	2	<0.01	50.7	49.7	16	-0.091	AT2G36250.1	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2887.79	576.49
[show peptides]	88	105	3.3	2	<0.01	50.7	49.7	16	-0.091	AT2G36250.2	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2887.79	576.49
[show peptides]	88	87	5.5	2	<0.01	50.4	49.7	16	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	87	6.2	2	<0.01	44.7	49.7	16	-0.216	AT5G46290.2	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	87	5.3	2	<0.01	52.1	49.7	16	-0.146	AT5G46290.3	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	45	4.7	1	<0.01	24.1	49.7	16	-0.902	AT4G31460.1	Rpl28, Ribosomal L28 family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	mitochondrion	2887.79	576.49
[show peptides]	88	42	3.1	1	<0.01	50.4	49.7	16	-0.252	AT1G32200.1	ATS1, ACT1, phospholipid/glycerol acyltransferase family protein (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	88	42	3.1	1	<0.01	50.4	49.7	16	-0.252	AT1G32200.2	ATS1, ACT1, phospholipid/glycerol acyltransferase family protein (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2887.79	576.49
[show peptides]	89	437	14.2	9	<0.01	56.0	46.3	1150	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	616.06	619.90
[show peptides]	89	158	7.0	3	<0.01	51.9	46.3	1150	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	616.06	619.90
[show peptides]	90	110	4.7	2	<0.01	56.0	46.5	500	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1194.33	617.09
[show peptides]	90	99	3.4	1	<0.01	51.9	46.5	500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1194.33	617.09
[show peptides]	90	92	5.3	2	<0.01	47.4	46.5	500	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1194.33	617.09
[show peptides]	90	92	5.3	2	<0.01	47.4	46.5	500	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1194.33	617.09
[show peptides]	90	92	5.3	2	<0.01	47.4	46.5	500	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1194.33	617.09
[show peptides]	91	1584	41.2	21	<0.01	50.1	48.1	110	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	1347	38.8	20	<0.01	52.0	48.1	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	1347	41.3	20	<0.01	49.1	48.1	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	1347	41.7	20	<0.01	48.5	48.1	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	1053	36.0	13	<0.01	42.6	48.1	110	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2230.11	596.50
[show peptides]	91	1052	30.5	13	<0.01	49.9	48.1	110	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2230.11	596.50
[show peptides]	91	963	36.2	16	<0.01	43.0	48.1	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	728	28.3	11	<0.01	42.9	48.1	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	634	22.8	11	<0.01	47.4	48.1	110	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2230.11	596.50
[show peptides]	91	634	22.8	11	<0.01	47.4	48.1	110	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2230.11	596.50
[show peptides]	91	634	22.8	11	<0.01	47.4	48.1	110	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2230.11	596.50
[show peptides]	91	219	11.2	4	<0.01	28.2	48.1	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2230.11	596.50
[show peptides]	91	204	13.4	5	<0.01	47.7	48.1	110	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	189	12.1	4	<0.01	28.6	48.1	110	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2230.11	596.50
[show peptides]	91	95	5.0	2	<0.01	45.1	48.1	110	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2230.11	596.50
[show peptides]	91	78	5.8	2	<0.01	42.5	48.1	110	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	60	3.1	1	<0.01	50.3	48.1	110	-0.331	AT1G15730.1	Cobalamin biosynthesis CobW-like protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2230.11	596.50
[show peptides]	91	42	4.7	1	<0.01	34.3	48.1	110	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	42	4.3	1	<0.01	37.7	48.1	110	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	91	42	4.3	1	<0.01	37.7	48.1	110	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2230.11	596.50
[show peptides]	92	1465	33.1	23	<0.01	56.0	46.8	260	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1669.29	613.85
[show peptides]	92	755	25.8	14	<0.01	47.4	46.8	260	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1669.29	613.85
[show peptides]	92	755	25.8	14	<0.01	47.4	46.8	260	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1669.29	613.85
[show peptides]	92	755	25.8	14	<0.01	47.4	46.8	260	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1669.29	613.85
[show peptides]	92	531	19.5	9	<0.01	51.9	46.8	260	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1669.29	613.85
[show peptides]	92	329	21.6	7	<0.01	50.1	46.8	260	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	92	246	13.5	5	<0.01	46.7	46.8	260	-0.221	AT1G69740.1	HEMB1, Aldolase superfamily protein (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1669.29	613.85
[show peptides]	92	246	13.5	5	<0.01	46.7	46.8	260	-0.221	AT1G69740.2	HEMB1, Aldolase superfamily protein (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1669.29	613.85
[show peptides]	92	220	10.8	4	<0.01	39.5	46.8	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.29	613.85
[show peptides]	92	215	9.1	4	<0.01	52.0	46.8	260	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	92	215	9.6	4	<0.01	49.1	46.8	260	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	92	215	9.8	4	<0.01	48.5	46.8	260	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	92	141	8.8	2	<0.01	35.4	46.8	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.29	613.85
[show peptides]	92	95	5.6	2	<0.01	47.7	46.8	260	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	92	55	4.7	1	<0.01	34.3	46.8	260	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	92	55	4.3	1	<0.01	37.7	46.8	260	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	92	55	4.3	1	<0.01	37.7	46.8	260	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	1669.29	613.85
[show peptides]	93	584	25.7	13	<0.01	45.5	46.0	1700	-0.154	ATCG01110.1	NdhH	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	624.05
[show peptides]	93	86	3.4	1	<0.01	51.9	46.0	1700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	303.56	624.05
[show peptides]	93	51	2.2	1	<0.01	56.0	46.0	1700	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	303.56	624.05
[show peptides]	94	429	20.4	10	<0.01	45.5	46.2	1500	-0.154	ATCG01110.1	NdhH	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	622.39
[show peptides]	94	98	5.1	2	<0.01	51.9	46.2	1500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	419.62	622.39
[show peptides]	94	57	1.6	1	<0.01	56.0	46.2	1500	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	419.62	622.39
[show peptides]	95	441	16.6	7	<0.01	50.1	47.7	150	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2077.41	601.20
[show peptides]	95	369	14.2	6	<0.01	38.9	47.7	150	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2077.41	601.20
[show peptides]	95	227	19.0	5	<0.01	31.1	47.7	150	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2077.41	601.20
[show peptides]	95	184	8.2	4	<0.01	52.0	47.7	150	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2077.41	601.20
[show peptides]	95	184	8.7	4	<0.01	49.1	47.7	150	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2077.41	601.20
[show peptides]	95	184	8.8	4	<0.01	48.5	47.7	150	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2077.41	601.20
[show peptides]	95	174	21.6	5	<0.01	31.2	47.7	150	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2077.41	601.20
[show peptides]	95	129	11.2	3	<0.01	28.2	47.7	150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2077.41	601.20
[show peptides]	95	38	3.3	1	<0.01	47.4	47.7	150	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2077.41	601.20
[show peptides]	95	38	3.3	1	<0.01	47.4	47.7	150	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2077.41	601.20
[show peptides]	95	38	3.3	1	<0.01	47.4	47.7	150	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2077.41	601.20
[show peptides]	96	1823	45.7	23	<0.01	50.1	47.8	79	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	1700	54.4	27	<0.01	52.0	47.8	79	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	1700	57.8	27	<0.01	49.1	47.8	79	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	1700	58.5	27	<0.01	48.5	47.8	79	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	1232	45.9	16	<0.01	42.6	47.8	79	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2388.60	600.77
[show peptides]	96	1231	38.9	16	<0.01	49.9	47.8	79	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2388.60	600.77
[show peptides]	96	625	29.5	12	<0.01	47.4	47.8	79	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2388.60	600.77
[show peptides]	96	625	29.5	12	<0.01	47.4	47.8	79	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2388.60	600.77
[show peptides]	96	625	29.5	12	<0.01	47.4	47.8	79	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2388.60	600.77
[show peptides]	96	589	28.1	9	<0.01	45.2	47.8	79	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1 (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2388.60	600.77
[show peptides]	96	589	28.1	9	<0.01	45.2	47.8	79	-0.208	AT3G54050.2	HCEF1, high cyclic electron flow 1 (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2388.60	600.77
[show peptides]	96	427	19.9	8	<0.01	49.8	47.8	79	-0.149	AT4G31990.1	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2388.60	600.77
[show peptides]	96	427	19.9	8	<0.01	49.8	47.8	79	-0.149	AT4G31990.2	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2388.60	600.77
[show peptides]	96	427	19.5	8	<0.01	51.0	47.8	79	-0.140	AT4G31990.3	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2388.60	600.77
[show peptides]	96	427	20.1	8	<0.01	49.3	47.8	79	-0.138	AT4G31990.4	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 4)	amino acid metabolism	VI) other metabolic pathways	plastid	2388.60	600.77
[show peptides]	96	171	7.2	3	<0.01	45.1	47.8	79	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2388.60	600.77
[show peptides]	96	129	13.3	4	<0.01	42.8	47.8	79	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	129	15.1	4	<0.01	37.7	47.8	79	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	129	15.1	4	<0.01	37.7	47.8	79	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	115	6.9	3	<0.01	50.2	47.8	79	-0.125	AT2G28800.1	ALB3, 63 kDa inner membrane family protein (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2388.60	600.77
[show peptides]	96	115	7.4	3	<0.01	47.1	47.8	79	-0.181	AT2G28800.4	ALB3, 63 kDa inner membrane family protein (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2388.60	600.77
[show peptides]	96	112	8.5	3	<0.01	56.0	47.8	79	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2388.60	600.77
[show peptides]	96	108	6.8	3	<0.01	48.3	47.8	79	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.60	600.77
[show peptides]	96	108	6.8	3	<0.01	48.2	47.8	79	-0.168	AT5G58330.2	Lactate/malate dehydrogenase family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.60	600.77
[show peptides]	96	108	9.0	3	<0.01	36.4	47.8	79	-0.138	AT5G58330.3	Lactate/malate dehydrogenase family protein (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.60	600.77
[show peptides]	96	103	14.2	3	<0.01	34.3	47.8	79	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2388.60	600.77
[show peptides]	96	65	2.5	1	<0.01	48.3	47.8	79	-0.376	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G73110.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2388.60	600.77
[show peptides]	96	53	3.1	1	<0.01	50.3	47.8	79	-0.331	AT1G15730.1	Cobalamin biosynthesis CobW-like protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.60	600.77
[show peptides]	96	53	5.1	2	<0.01	56.8	47.8	79	0.183	AT5G05740.2	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 2)	proteases	V) protein folding & processing	plastid	2388.60	600.77
[show peptides]	96	53	5.2	2	<0.01	56.4	47.8	79	0.179	AT5G05740.3	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 3)	proteases	V) protein folding & processing	plastid	2388.60	600.77
[show peptides]	96	48	1.9	1	<0.01	50.3	47.8	79	-0.060	AT3G52750.1	FTSZ2-2, Tubulin/FtsZ family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.60	600.77
[show peptides]	96	47	4.7	1	<0.01	44.4	47.8	79	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2388.60	600.77
[show peptides]	96	47	2.8	1	<0.01	49.3	47.8	79	-0.343	AT3G58140.1	Phenylalanyl-tRNA synthetase class IIc family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2388.60	600.77
[show peptides]	97	1469	45.3	21	<0.01	50.1	47.0	200	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1858.05	611.14
[show peptides]	97	1223	30.7	19	<0.01	56.0	47.0	200	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1858.05	611.14
[show peptides]	97	1176	39.7	19	<0.01	52.0	47.0	200	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1858.05	611.14
[show peptides]	97	1176	42.2	19	<0.01	49.1	47.0	200	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1858.05	611.14
[show peptides]	97	1176	42.6	19	<0.01	48.5	47.0	200	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1858.05	611.14
[show peptides]	97	805	28.4	11	<0.01	42.6	47.0	200	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	1858.05	611.14
[show peptides]	97	804	24.1	11	<0.01	49.9	47.0	200	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	1858.05	611.14
[show peptides]	97	679	20.2	12	<0.01	47.4	47.0	200	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1858.05	611.14
[show peptides]	97	679	20.2	12	<0.01	47.4	47.0	200	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1858.05	611.14
[show peptides]	97	679	20.2	12	<0.01	47.4	47.0	200	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1858.05	611.14
[show peptides]	97	116	7.2	3	<0.01	45.1	47.0	200	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1858.05	611.14
[show peptides]	97	110	8.2	3	<0.01	51.6	47.0	200	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1858.05	611.14
[show peptides]	97	104	6.9	3	<0.01	50.2	47.0	200	-0.125	AT2G28800.1	ALB3, 63 kDa inner membrane family protein (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	1858.05	611.14
[show peptides]	97	104	7.4	3	<0.01	47.1	47.0	200	-0.181	AT2G28800.4	ALB3, 63 kDa inner membrane family protein (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	1858.05	611.14
[show peptides]	97	77	7.0	2	<0.01	27.5	47.0	200	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1858.05	611.14
[show peptides]	97	60	2.8	1	<0.01	41.3	47.0	200	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1858.05	611.14
[show peptides]	97	53	3.2	1	<0.01	47.8	47.0	200	-0.442	AT2G22360.1	DNAJ heat shock family protein	other HSP	V) protein folding & processing	plastid	1858.05	611.14
[show peptides]	98	1987	64.7	27	<0.01	50.1	47.5	66	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2459.48	604.57
[show peptides]	98	1637	54.9	23	<0.01	52.0	47.5	66	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2459.48	604.57
[show peptides]	98	1637	58.3	23	<0.01	49.1	47.5	66	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2459.48	604.57
[show peptides]	98	1637	59.0	23	<0.01	48.5	47.5	66	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2459.48	604.57
[show peptides]	98	1454	62.5	19	<0.01	42.6	47.5	66	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2459.48	604.57
[show peptides]	98	1453	52.9	19	<0.01	49.9	47.5	66	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2459.48	604.57
[show peptides]	98	1267	45.7	20	<0.01	49.8	47.5	66	-0.149	AT4G31990.1	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	1267	45.7	20	<0.01	49.8	47.5	66	-0.149	AT4G31990.2	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	1267	46.2	20	<0.01	49.3	47.5	66	-0.138	AT4G31990.4	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 4)	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	1193	41.3	19	<0.01	51.0	47.5	66	-0.140	AT4G31990.3	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	504	33.5	11	<0.01	47.4	47.5	66	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	504	33.5	11	<0.01	47.4	47.5	66	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	504	33.5	11	<0.01	47.4	47.5	66	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	245	7.7	4	<0.01	56.0	47.5	66	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2459.48	604.57
[show peptides]	98	168	9.5	3	<0.01	50.4	47.5	66	-0.159	AT4G33680.1	AGD2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2459.48	604.57
[show peptides]	98	96	7.4	3	<0.01	51.9	47.5	66	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2459.48	604.57
[show peptides]	98	65	2.5	1	<0.01	48.3	47.5	66	-0.376	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G73110.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2459.48	604.57
[show peptides]	98	54	1.4	1	<0.01	60.1	47.5	66	0.215	AT5G05740.1	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 1)	proteases	V) protein folding & processing	plastid	2459.48	604.57
[show peptides]	98	54	1.5	1	<0.01	56.8	47.5	66	0.183	AT5G05740.2	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 2)	proteases	V) protein folding & processing	plastid	2459.48	604.57
[show peptides]	98	54	1.5	1	<0.01	56.4	47.5	66	0.179	AT5G05740.3	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 3)	proteases	V) protein folding & processing	plastid	2459.48	604.57
[show peptides]	98	50	3.6	1	<0.01	48.3	47.5	66	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2459.48	604.57
[show peptides]	98	50	3.6	1	<0.01	48.2	47.5	66	-0.168	AT5G58330.2	Lactate/malate dehydrogenase family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2459.48	604.57
[show peptides]	98	50	4.8	1	<0.01	36.4	47.5	66	-0.138	AT5G58330.3	Lactate/malate dehydrogenase family protein (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2459.48	604.57
[show peptides]	98	42	3.3	1	<0.05	49.9	47.5	66	-0.074	AT1G26090.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G26090.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2459.48	604.57
[show peptides]	98	41	2.9	1	<0.05	45.2	47.5	66	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1 (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2459.48	604.57
[show peptides]	98	41	2.9	1	<0.05	45.2	47.5	66	-0.208	AT3G54050.2	HCEF1, high cyclic electron flow 1 (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2459.48	604.57
[show peptides]	98	39	2.4	1	<0.05	45.1	47.5	66	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2459.48	604.57
[show peptides]	98	35	2.8	1	<0.05	50.2	47.5	66	-0.125	AT2G28800.1	ALB3, 63 kDa inner membrane family protein (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2459.48	604.57
[show peptides]	98	35	3.0	1	<0.05	47.1	47.5	66	-0.181	AT2G28800.4	ALB3, 63 kDa inner membrane family protein (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2459.48	604.57
[show peptides]	99	1788	47.4	25	<0.01	50.1	47.6	47	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2579.21	603.42
[show peptides]	99	1732	55.5	27	<0.01	52.0	47.6	47	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2579.21	603.42
[show peptides]	99	1732	59.0	27	<0.01	49.1	47.6	47	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2579.21	603.42
[show peptides]	99	1732	59.6	27	<0.01	48.5	47.6	47	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2579.21	603.42
[show peptides]	99	1175	47.7	16	<0.01	42.6	47.6	47	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2579.21	603.42
[show peptides]	99	1174	40.4	16	<0.01	49.9	47.6	47	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2579.21	603.42
[show peptides]	99	1054	40.2	17	<0.01	49.8	47.6	47	-0.149	AT4G31990.1	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2579.21	603.42
[show peptides]	99	1054	40.2	17	<0.01	49.8	47.6	47	-0.149	AT4G31990.2	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2579.21	603.42
[show peptides]	99	1054	40.6	17	<0.01	49.3	47.6	47	-0.138	AT4G31990.4	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 4)	amino acid metabolism	VI) other metabolic pathways	plastid	2579.21	603.42
[show peptides]	99	927	30.2	13	<0.01	50.4	47.6	47	-0.159	AT4G33680.1	AGD2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2579.21	603.42
[show peptides]	99	373	17.4	9	<0.01	47.4	47.6	47	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2579.21	603.42
[show peptides]	99	373	17.4	9	<0.01	47.4	47.6	47	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2579.21	603.42
[show peptides]	99	373	17.4	9	<0.01	47.4	47.6	47	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2579.21	603.42
[show peptides]	99	208	8.6	3	<0.01	48.3	47.6	47	-0.376	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G73110.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2579.21	603.42
[show peptides]	99	145	6.3	3	<0.01	60.1	47.6	47	0.215	AT5G05740.1	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 1)	proteases	V) protein folding & processing	plastid	2579.21	603.42
[show peptides]	99	145	6.6	3	<0.01	56.8	47.6	47	0.183	AT5G05740.2	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 2)	proteases	V) protein folding & processing	plastid	2579.21	603.42
[show peptides]	99	145	6.7	3	<0.01	56.4	47.6	47	0.179	AT5G05740.3	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 (Gene model 3)	proteases	V) protein folding & processing	plastid	2579.21	603.42
[show peptides]	99	116	3.4	2	<0.01	59.8	47.6	47	0.549	AT5G59250.1	Major facilitator superfamily protein	other transporters	III) transport	plastid	2579.21	603.42
[show peptides]	99	84	4.6	2	<0.01	45.1	47.6	47	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2579.21	603.42
[show peptides]	99	57	4.7	1	<0.01	44.4	47.6	47	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2579.21	603.42
[show peptides]	99	40	1.0	1	<0.05	111.7	47.6	47	-0.636	AT3G45780.1	PHOT1, NPH1, JK224, RPT1, phototropin 1 (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plasma membrane	2579.21	603.42
[show peptides]	99	40	1.0	1	<0.05	111.7	47.6	47	-0.636	AT3G45780.2	PHOT1, NPH1, JK224, RPT1, phototropin 1 (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plasma membrane	2579.21	603.42
[show peptides]	100	741	24.7	12	<0.01	52.0	46.6	22	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2808.62	615.72
[show peptides]	100	741	26.2	12	<0.01	49.1	46.6	22	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2808.62	615.72
[show peptides]	100	741	26.5	12	<0.01	48.5	46.6	22	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2808.62	615.72
[show peptides]	100	302	18.1	7	<0.01	47.4	46.6	22	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2808.62	615.72
[show peptides]	100	302	18.1	7	<0.01	47.4	46.6	22	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2808.62	615.72
[show peptides]	100	302	18.1	7	<0.01	47.4	46.6	22	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2808.62	615.72
[show peptides]	100	191	9.1	4	<0.01	50.1	46.6	22	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2808.62	615.72
[show peptides]	100	130	5.4	2	<0.01	43.9	46.6	22	-0.094	AT1G31180.1	ATIMD3, IMD3, IPMDH1, isopropylmalate dehydrogenase 3	amino acid metabolism	VI) other metabolic pathways	plastid	2808.62	615.72
[show peptides]	100	51	2.4	1	<0.01	46.4	46.6	22	-0.282	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein (AT1G04420.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2808.62	615.72
[show peptides]	101	1702	54.4	25	<0.01	52.0	46.5	16	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2885.79	617.48
[show peptides]	101	1702	57.8	25	<0.01	49.1	46.5	16	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2885.79	617.48
[show peptides]	101	1702	58.5	25	<0.01	48.5	46.5	16	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2885.79	617.48
[show peptides]	101	767	35.0	13	<0.01	47.6	46.5	16	-0.348	AT3G56940.1	CRD1, CHL27, ACSF, dicarboxylate diiron protein, putative (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2885.79	617.48
[show peptides]	101	580	23.5	10	<0.01	48.3	46.5	16	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79	617.48
[show peptides]	101	580	23.5	10	<0.01	48.2	46.5	16	-0.168	AT5G58330.2	Lactate/malate dehydrogenase family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79	617.48
[show peptides]	101	564	16.3	12	<0.01	102.1	46.5	16	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79	617.48
[show peptides]	101	471	21.8	8	<0.01	50.1	46.5	16	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2885.79	617.48
[show peptides]	101	455	25.7	9	<0.01	46.4	46.5	16	-0.282	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein (AT1G04420.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79	617.48
[show peptides]	101	303	21.2	8	<0.01	47.4	46.5	16	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2885.79	617.48
[show peptides]	101	303	21.2	8	<0.01	47.4	46.5	16	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2885.79	617.48
[show peptides]	101	303	21.2	8	<0.01	47.4	46.5	16	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2885.79	617.48
[show peptides]	101	266	11.5	4	<0.01	44.2	46.5	16	-0.057	AT5G14200.1	ATIMD1, IMD1, isopropylmalate dehydrogenase 1 (Gene model 1)	glucosinolate metabolism	VI) other metabolic pathways	plastid	2885.79	617.48
[show peptides]	101	217	11.8	4	<0.01	44.4	46.5	16	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2885.79	617.48
[show peptides]	101	203	12.8	4	<0.01	47.4	46.5	16	-0.229	AT4G35630.1	PSAT, phosphoserine aminotransferase	amino acid metabolism	VI) other metabolic pathways	plastid	2885.79	617.48
[show peptides]	101	200	7.2	3	<0.01	45.1	46.5	16	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2885.79	617.48
[show peptides]	101	94	8.9	2	<0.01	44.5	46.5	16	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2885.79	617.48
[show peptides]	101	40	2.5	1	<0.05	47.0	46.5	16	0.070	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2885.79	617.48
[show peptides]	101	36	2.0	1	<0.05	48.8	46.5	16	0.122	AT1G80600.1	WIN1, HOPW1-1-interacting 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79	617.48
[show peptides]	102	1377	38.7	19	<0.01	43.0	43.8	120	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	1262	39.8	18	<0.01	42.9	43.8	120	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	712	28.4	11	<0.01	47.7	43.8	120	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	315	18.7	6	<0.01	42.5	43.8	120	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	289	12.0	5	<0.01	28.2	43.8	120	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2191.00	657.77
[show peptides]	102	274	7.7	4	<0.01	42.3	43.8	120	-0.249	AT2G01140.1	Aldolase superfamily protein (AT2G01140.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2191.00	657.77
[show peptides]	102	237	15.8	4	<0.01	34.3	43.8	120	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	237	14.3	4	<0.01	37.7	43.8	120	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	237	14.3	4	<0.01	37.7	43.8	120	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	236	8.8	5	<0.01	59.2	43.8	120	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1 (Gene model 1)	other transporters	III) transport	plastid	2191.00	657.77
[show peptides]	102	225	12.1	4	<0.01	28.6	43.8	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2191.00	657.77
[show peptides]	102	109	3.4	1	<0.01	51.9	43.8	120	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2191.00	657.77
[show peptides]	102	61	2.3	1	<0.01	52.0	43.8	120	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	61	2.5	1	<0.01	49.1	43.8	120	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	61	2.5	1	<0.01	48.5	43.8	120	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2191.00	657.77
[show peptides]	102	53	2.4	1	<0.01	44.8	43.8	120	-0.031	AT1G09795.1	ATATP-PRT2, HISN1B, ATP-PRT2, ATP phosphoribosyl transferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2191.00	657.77
[show peptides]	103	1929	59.5	28	<0.01	47.7	44.3	90	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	662	32.1	12	<0.01	42.5	44.3	90	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	469	27.4	8	<0.01	34.3	44.3	90	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	429	18.2	8	<0.01	51.9	44.3	90	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2329.93	648.86
[show peptides]	103	271	9.8	4	<0.01	43.0	44.3	90	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	156	5.7	3	<0.01	52.0	44.3	90	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	156	6.1	3	<0.01	49.1	44.3	90	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	156	6.1	3	<0.01	48.5	44.3	90	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	58	6.3	2	<0.01	44.5	44.3	90	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2329.93	648.86
[show peptides]	103	57	2.2	1	<0.01	51.2	44.3	90	-0.300	AT3G11170.1	FAD7, FADD, fatty acid desaturase 7	fatty acid metabolism	VI) other metabolic pathways	plastid	2329.93	648.86
[show peptides]	103	48	2.5	1	<0.01	40.3	44.3	90	-0.031	AT3G14415.1	Aldolase-type TIM barrel family protein (AT3G14415.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2329.93	648.86
[show peptides]	103	48	2.4	1	<0.01	40.9	44.3	90	-0.023	AT3G14415.2	Aldolase-type TIM barrel family protein (AT3G14415.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2329.93	648.86
[show peptides]	103	48	2.5	1	<0.01	40.3	44.3	90	-0.031	AT3G14415.3	Aldolase-type TIM barrel family protein (AT3G14415.3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2329.93	648.86
[show peptides]	103	43	1.8	1	<0.01	59.2	44.3	90	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1 (Gene model 1)	other transporters	III) transport	plastid	2329.93	648.86
[show peptides]	103	43	1.8	1	<0.01	59.0	44.3	90	0.778	AT5G12860.2	DiT1, DCT, dicarboxylate transporter 1 (Gene model 2)	other transporters	III) transport	plastid	2329.93	648.86
[show peptides]	103	37	2.4	1	<0.01	44.8	44.3	90	-0.031	AT1G09795.1	ATATP-PRT2, HISN1B, ATP-PRT2, ATP phosphoribosyl transferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2329.93	648.86
[show peptides]	104	437	13.5	7	<0.01	51.9	42.1	830	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	829.77	683.73
[show peptides]	105	2066	60.3	32	<0.01	53.0	45.3	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	634.47
[show peptides]	105	878	32.8	17	<0.01	47.4	45.3	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	634.47
[show peptides]	105	878	32.8	17	<0.01	47.4	45.3	430	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	634.47
[show peptides]	105	878	32.8	17	<0.01	47.4	45.3	430	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	634.47
[show peptides]	105	577	22.9	9	<0.01	50.1	45.3	430	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1357.29	634.47
[show peptides]	105	527	23.4	9	<0.01	52.0	45.3	430	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1357.29	634.47
[show peptides]	105	527	24.9	9	<0.01	49.1	45.3	430	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1357.29	634.47
[show peptides]	105	527	25.2	9	<0.01	48.5	45.3	430	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1357.29	634.47
[show peptides]	105	424	12.0	7	<0.01	56.0	45.3	430	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1357.29	634.47
[show peptides]	105	227	11.8	4	<0.01	51.6	45.3	430	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1357.29	634.47
[show peptides]	105	176	22.1	4	<0.01	20.3	45.3	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1357.29	634.47
[show peptides]	105	176	21.5	4	<0.01	20.8	45.3	430	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1357.29	634.47
[show peptides]	105	88	8.1	2	<0.01	45.5	45.3	430	-0.154	ATCG01110.1	NdhH	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	1357.29	634.47
[show peptides]	105	34	3.5	1	<0.05	24.3	45.3	430	-0.220	AT5G57950.1	26S proteasome regulatory subunit, putative	proteases	V) protein folding & processing	plastid new	1357.29	634.47
[show peptides]	106	828	20.9	15	<0.01	51.9	43.2	260	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1669.29	666.48
[show peptides]	106	732	25.3	12	<0.01	47.7	43.2	260	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	1669.29	666.48
[show peptides]	106	481	19.1	11	<0.01	56.0	43.2	260	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1669.29	666.48
[show peptides]	106	229	10.8	4	<0.01	39.5	43.2	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.29	666.48
[show peptides]	106	129	7.8	2	<0.01	35.4	43.2	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.29	666.48
[show peptides]	106	125	9.1	2	<0.01	34.3	43.2	260	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	1669.29	666.48
[show peptides]	106	125	8.3	2	<0.01	37.7	43.2	260	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1669.29	666.48
[show peptides]	106	125	8.3	2	<0.01	37.7	43.2	260	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	1669.29	666.48
[show peptides]	106	70	3.1	1	<0.01	38.9	43.2	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1669.29	666.48
[show peptides]	107	327	20.1	6	<0.01	45.2	45.2	72	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1 (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2427.44	635.71
[show peptides]	107	327	20.1	6	<0.01	45.2	45.2	72	-0.208	AT3G54050.2	HCEF1, high cyclic electron flow 1 (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2427.44	635.71
[show peptides]	107	293	16.3	6	<0.01	47.7	45.2	72	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2427.44	635.71
[show peptides]	107	53	4.7	1	<0.01	34.3	45.2	72	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2427.44	635.71
[show peptides]	107	53	4.3	1	<0.01	37.7	45.2	72	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2427.44	635.71
[show peptides]	107	53	4.3	1	<0.01	37.7	45.2	72	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2427.44	635.71
[show peptides]	108	870	30.0	14	<0.01	47.7	44.8	55	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	570	18.4	10	<0.01	51.9	44.8	55	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2528.70	641.26
[show peptides]	108	433	17.9	8	<0.01	52.0	44.8	55	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	433	19.1	8	<0.01	49.1	44.8	55	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	433	19.3	8	<0.01	48.5	44.8	55	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	363	19.5	7	<0.01	44.5	44.8	55	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	331	10.3	7	<0.01	60.0	44.8	55	0.608	AT5G64290.1	DiT2.1, DCT, dicarboxylate transport 2.1	other transporters	III) transport	plastid	2528.70	641.26
[show peptides]	108	280	16.5	5	<0.01	45.2	44.8	55	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1 (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2528.70	641.26
[show peptides]	108	280	16.5	5	<0.01	45.2	44.8	55	-0.208	AT3G54050.2	HCEF1, high cyclic electron flow 1 (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2528.70	641.26
[show peptides]	108	243	13.2	5	<0.01	45.1	44.8	55	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2528.70	641.26
[show peptides]	108	201	11.7	5	<0.01	49.9	44.8	55	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2528.70	641.26
[show peptides]	108	201	13.8	5	<0.01	42.6	44.8	55	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2528.70	641.26
[show peptides]	108	174	10.6	3	<0.01	37.7	44.8	55	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	174	10.6	3	<0.01	37.7	44.8	55	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	136	9.1	2	<0.01	34.3	44.8	55	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2528.70	641.26
[show peptides]	108	103	8.0	3	<0.01	46.3	44.8	55	-0.223	AT4G18480.1	CHLI1, CH42, CH-42, CHL11, CHLI-1, P-loop containing nucleoside triphosphate hydrolases superfamily	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2528.70	641.26
[show peptides]	108	95	3.6	2	<0.01	59.2	44.8	55	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1 (Gene model 1)	other transporters	III) transport	plastid	2528.70	641.26
[show peptides]	108	95	3.6	2	<0.01	59.0	44.8	55	0.778	AT5G12860.2	DiT1, DCT, dicarboxylate transporter 1 (Gene model 2)	other transporters	III) transport	plastid	2528.70	641.26
[show peptides]	108	80	3.6	2	<0.01	59.8	44.8	55	0.549	AT5G59250.1	Major facilitator superfamily protein	other transporters	III) transport	plastid	2528.70	641.26
[show peptides]	108	48	3.6	1	<0.01	42.6	44.8	55	-0.458	AT1G78915.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G78915.1)	TPR proteins	VI) other metabolic pathways	plastid	2528.70	641.26
[show peptides]	108	48	3.5	1	<0.01	44.7	44.8	55	-0.415	AT1G78915.2	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G78915.2)	TPR proteins	VI) other metabolic pathways	plastid	2528.70	641.26
[show peptides]	108	48	3.5	1	<0.01	45.0	44.8	55	-0.405	AT1G78915.3	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G78915.3)	TPR proteins	VI) other metabolic pathways	plastid	2528.70	641.26
[show peptides]	108	46	2.2	1	<0.01	59.5	44.8	55	0.214	AT2G18710.1	SecY-1, SCY1	protein transporters	III) transport	plastid	2528.70	641.26
[show peptides]	109	1014	46.1	15	<0.01	44.5	44.3	28	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	825	19.0	17	<0.01	102.1	44.3	28	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2743.18	649.93
[show peptides]	109	693	26.0	12	<0.01	47.7	44.3	28	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	211	17.5	6	<0.01	46.6	44.3	28	-0.215	AT2G17630.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2743.18	649.93
[show peptides]	109	170	12.9	5	<0.01	46.3	44.3	28	-0.082	AT3G14930.1	HEME1, Uroporphyrinogen decarboxylase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2743.18	649.93
[show peptides]	109	170	12.9	5	<0.01	46.3	44.3	28	-0.082	AT3G14930.2	HEME1, Uroporphyrinogen decarboxylase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2743.18	649.93
[show peptides]	109	170	15.8	5	<0.01	38.3	44.3	28	-0.135	AT3G14930.3	HEME1, Uroporphyrinogen decarboxylase (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2743.18	649.93
[show peptides]	109	168	10.6	3	<0.01	37.7	44.3	28	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	168	10.6	3	<0.01	37.7	44.3	28	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	140	9.1	2	<0.01	34.3	44.3	28	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	123	5.7	3	<0.01	52.0	44.3	28	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	123	6.1	3	<0.01	49.1	44.3	28	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	123	6.1	3	<0.01	48.5	44.3	28	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2743.18	649.93
[show peptides]	109	37	3.0	1	<0.01	51.9	44.3	28	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2743.18	649.93
[show peptides]	110	286	13.3	5	<0.01	51.9	42.1	500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1194.33	683.49
[show peptides]	111	1482	56.2	25	<0.01	53.0	43.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	668.32
[show peptides]	111	486	19.2	8	<0.01	47.7	43.1	430	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	1357.29	668.32
[show peptides]	111	145	6.3	2	<0.01	51.9	43.1	430	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1357.29	668.32
[show peptides]	111	105	6.6	2	<0.01	37.7	43.1	430	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1357.29	668.32
[show peptides]	111	105	6.6	2	<0.01	37.7	43.1	430	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	1357.29	668.32
[show peptides]	111	85	8.9	2	<0.01	20.2	43.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	668.32
[show peptides]	111	49	4.7	1	<0.01	34.3	43.1	430	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	1357.29	668.32
[show peptides]	112	751	44.6	9	<0.01	28.2	43.0	70	0.021	AT1G29930.1	Lhcb1.3, CAB1, AB140, CAB140	b) photosystem II	I) photophosphorylation	plastid	2441.14	669.26
[show peptides]	112	664	46.2	9	<0.01	28.2	43.0	70	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2441.14	669.26
[show peptides]	112	562	34.0	3	<0.01	28.6	43.0	70	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2441.14	669.26
[show peptides]	112	522	40.0	10	<0.01	29.5	43.0	70	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2441.14	669.26
[show peptides]	112	522	31.1	10	<0.01	37.5	43.0	70	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2441.14	669.26
[show peptides]	112	522	32.1	10	<0.01	36.1	43.0	70	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2441.14	669.26
[show peptides]	112	196	20.8	4	<0.01	28.7	43.0	70	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2441.14	669.26
[show peptides]	112	42	9.5	1	<0.01	29.2	43.0	70	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2441.14	669.26
[show peptides]	112	42	11.9	1	<0.01	23.7	43.0	70	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2441.14	669.26
[show peptides]	112	42	9.5	1	<0.01	29.2	43.0	70	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	2441.14	669.26
[show peptides]	112	36	1.6	1	<0.01	50.7	43.0	70	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	2441.14	669.26
[show peptides]	112	35	1.5	1	<0.01	65.4	43.0	70	-0.315	AT3G22330.1	PMH2, ATRH53, putative mitochondrial RNA helicase 2	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	mitochondrion	2441.14	669.26
[show peptides]	113	410	15.2	7	<0.01	51.9	43.2	56	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2525.18	666.64
[show peptides]	113	397	11.5	7	<0.01	59.2	43.2	56	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1 (Gene model 1)	other transporters	III) transport	plastid	2525.18	666.64
[show peptides]	113	351	17.9	7	<0.01	42.5	43.2	56	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	305	18.0	6	<0.01	37.7	43.2	56	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	305	18.0	6	<0.01	37.7	43.2	56	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	281	17.4	5	<0.01	34.3	43.2	56	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	207	7.6	4	<0.01	52.0	43.2	56	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	207	8.1	4	<0.01	49.1	43.2	56	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	207	8.2	4	<0.01	48.5	43.2	56	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	177	14.8	5	<0.01	42.6	43.2	56	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2525.18	666.64
[show peptides]	113	140	8.3	4	<0.01	51.0	43.2	56	-0.311	AT1G80380.2	Glycerate kinase (Gene model 2)	other proteins	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	140	10.4	4	<0.01	40.8	43.2	56	-0.299	AT1G80380.3	Glycerate kinase (Gene model 3)	other proteins	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	140	8.4	4	<0.01	50.3	43.2	56	-0.291	AT1G80380.4	Glycerate kinase (Gene model 4)	other proteins	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	130	6.7	3	<0.01	60.0	43.2	56	0.608	AT5G64290.1	DiT2.1, DCT, dicarboxylate transport 2.1	other transporters	III) transport	plastid	2525.18	666.64
[show peptides]	113	126	7.5	3	<0.01	43.0	43.2	56	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	116	10.5	3	<0.01	43.9	43.2	56	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2525.18	666.64
[show peptides]	113	116	10.5	3	<0.01	43.6	43.2	56	-0.336	AT1G03630.2	POR C, protochlorophyllide oxidoreductase C (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2525.18	666.64
[show peptides]	113	113	6.8	3	<0.01	42.9	43.2	56	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2525.18	666.64
[show peptides]	113	107	6.8	3	<0.01	45.0	43.2	56	-0.085	AT3G49680.1	ATBCAT-3, BCAT3, branched-chain aminotransferase 3 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2525.18	666.64
[show peptides]	113	107	6.8	3	<0.01	44.7	43.2	56	-0.086	AT3G49680.2	ATBCAT-3, BCAT3, branched-chain aminotransferase 3 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2525.18	666.64
[show peptides]	113	88	3.4	1	<0.01	42.6	43.2	56	-0.361	AT3G52180.1	ATPTPKIS1, DSP4, SEX4, ATSEX4, dual specificity protein phosphatase (DsPTP1) family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2525.18	666.64
[show peptides]	113	54	4.4	1	<0.01	36.9	43.2	56	-0.137	AT1G13440.1	GapC-2, glyceraldehyde-3-phosphate dehydrogenase C subunit 2	calvin cycle	II) carbon fixation	cytosol	2525.18	666.64
[show peptides]	113	48	5.1	1	<0.01	43.6	43.2	56	-0.102	AT2G40490.1	HEME2, Uroporphyrinogen decarboxylase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2525.18	666.64
[show peptides]	114	572	16.7	10	<0.01	51.9	42.3	1000	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	725.81	681.11
[show peptides]	114	85	8.2	2	<0.01	28.2	42.3	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.81	681.11
[show peptides]	114	44	3.8	1	<0.01	42.8	42.3	1000	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	725.81	681.11
[show peptides]	114	44	4.7	1	<0.05	34.3	42.3	1000	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	725.81	681.11
[show peptides]	114	44	4.3	1	<0.05	37.7	42.3	1000	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	725.81	681.11
[show peptides]	114	44	4.3	1	<0.05	37.7	42.3	1000	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	725.81	681.11
[show peptides]	115	1684	49.5	23	<0.01	42.5	40.7	85	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	1585	45.1	21	<0.01	42.8	40.7	85	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	1585	51.4	21	<0.01	37.7	40.7	85	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	1585	51.4	21	<0.01	37.7	40.7	85	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	1240	41.0	17	<0.01	34.3	40.7	85	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	669	32.5	11	<0.01	44.1	40.7	85	-0.293	AT5G23120.1	HCF136, photosystem II stability/assembly factor, chloroplast (HCF136)	g) auxiliary proteins	I) photophosphorylation	plastid	2354.89	707.63
[show peptides]	115	524	22.6	9	<0.01	47.7	40.7	85	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	395	20.4	6	<0.01	40.9	40.7	85	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2354.89	707.63
[show peptides]	115	303	21.7	6	<0.01	42.6	40.7	85	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2354.89	707.63
[show peptides]	115	184	12.4	3	<0.01	41.8	40.7	85	-0.302	AT1G52510.1	Alpha/beta-Hydrolases superfamily protein (AT1G52510.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.89	707.63
[show peptides]	115	184	16.3	3	<0.01	32.1	40.7	85	-0.250	AT1G52510.2	Alpha/beta-Hydrolases superfamily protein (AT1G52510.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.89	707.63
[show peptides]	115	168	8.3	3	<0.01	43.2	40.7	85	-0.292	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein (AT2G27680.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.89	707.63
[show peptides]	115	147	14.8	5	<0.01	43.9	40.7	85	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2354.89	707.63
[show peptides]	115	117	6.7	2	<0.01	43.9	40.7	85	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2354.89	707.63
[show peptides]	115	117	6.8	2	<0.01	43.6	40.7	85	-0.336	AT1G03630.2	POR C, protochlorophyllide oxidoreductase C (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2354.89	707.63
[show peptides]	115	98	4.7	2	<0.01	43.4	40.7	85	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2354.89	707.63
[show peptides]	115	98	4.7	2	<0.01	43.4	40.7	85	-0.198	AT4G27440.2	PORB, protochlorophyllide oxidoreductase B (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2354.89	707.63
[show peptides]	115	94	3.4	1	<0.01	51.9	40.7	85	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2354.89	707.63
[show peptides]	115	87	17.7	2	<0.01	28.6	40.7	85	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2354.89	707.63
[show peptides]	115	76	2.8	1	<0.01	43.7	40.7	85	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.89	707.63
[show peptides]	115	68	2.3	1	<0.01	52.0	40.7	85	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	68	2.4	1	<0.01	50.5	40.7	85	-0.135	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT3G15520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.89	707.63
[show peptides]	115	68	2.5	1	<0.01	49.1	40.7	85	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	68	2.5	1	<0.01	48.5	40.7	85	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2354.89	707.63
[show peptides]	115	51	2.8	1	<0.01	41.3	40.7	85	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.89	707.63
[show peptides]	115	38	1.2	1	<0.01	66.2	40.7	85	-0.886	AT1G40129.1	AT1G40129.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	2354.89	707.63
[show peptides]	115	35	4.1	1	<0.01	41.0	40.7	85	0.044	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.89	707.63
[show peptides]	116	835	34.3	12	<0.01	40.9	41.8	42	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	636	39.0	11	<0.01	41.7	41.8	42	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 1)	sulfur metabolism	VI) other metabolic pathways	plastid	2618.88	689.05
[show peptides]	116	636	39.0	11	<0.01	41.7	41.8	42	0.018	AT2G43750.2	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 2)	sulfur metabolism	VI) other metabolic pathways	plastid	2618.88	689.05
[show peptides]	116	546	25.8	10	<0.01	43.7	41.8	42	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2618.88	689.05
[show peptides]	116	379	20.2	8	<0.01	41.3	41.8	42	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2618.88	689.05
[show peptides]	116	357	17.3	6	<0.01	41.2	41.8	42	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 1)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	357	18.3	6	<0.01	39.2	41.8	42	-0.408	AT1G20020.2	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 2)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	357	17.3	6	<0.01	41.2	41.8	42	-0.381	AT1G20020.3	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 3)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	345	17.9	6	<0.01	42.5	41.8	42	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2618.88	689.05
[show peptides]	116	297	19.9	5	<0.01	34.3	41.8	42	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2618.88	689.05
[show peptides]	116	297	18.0	5	<0.01	37.7	41.8	42	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2618.88	689.05
[show peptides]	116	297	18.0	5	<0.01	37.7	41.8	42	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2618.88	689.05
[show peptides]	116	250	22.2	6	<0.01	40.3	41.8	42	-0.365	AT5G66190.1	Ferredoxin-NADP(+)-oxidoreductase 1, ATLFNR1, FNR1	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	167	11.4	5	<0.01	55.3	41.8	42	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	116	7.7	2	<0.01	43.4	41.8	42	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2618.88	689.05
[show peptides]	116	116	7.7	2	<0.01	43.4	41.8	42	-0.198	AT4G27440.2	PORB, protochlorophyllide oxidoreductase B (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2618.88	689.05
[show peptides]	116	85	7.5	2	<0.01	30.2	41.8	42	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	74	3.4	1	<0.01	51.9	41.8	42	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	42	2.3	1	<0.01	42.7	41.8	42	-0.140	AT4G27800.1	TAP38, PPH1, thylakoid-associated phosphatase 38 (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	42	2.7	1	<0.01	36.9	41.8	42	-0.166	AT4G27800.2	TAP38, PPH1, thylakoid-associated phosphatase 38 (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	42	2.8	1	<0.01	35.9	41.8	42	-0.197	AT4G27800.3	TAP38, PPH1, thylakoid-associated phosphatase 38 (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2618.88	689.05
[show peptides]	116	41	3.4	1	<0.01	43.9	41.8	42	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2618.88	689.05
[show peptides]	116	37	2.0	1	<0.01	59.6	41.8	42	-0.152	AT5G08670.1	ATP synthase alpha/beta family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2618.88	689.05
[show peptides]	116	32	3.7	1	<0.05	54.0	41.8	42	0.702	AT1G32080.1	Membrane protein, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2618.88	689.05
[show peptides]	117	147	5.3	2	<0.01	51.9	42.6	1700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	303.56	675.41
[show peptides]	118	642	19.2	10	<0.01	51.9	42.3	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40	681.47
[show peptides]	118	234	10.8	4	<0.01	39.5	42.3	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	681.47
[show peptides]	118	139	6.9	3	<0.01	56.0	42.3	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40	681.47
[show peptides]	118	126	6.8	2	<0.01	38.9	42.3	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	681.47
[show peptides]	118	51	1.1	1	<0.01	82.5	42.3	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40	681.47
[show peptides]	119	269	9.9	4	<0.01	51.9	42.4	1500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	419.62	678.77
[show peptides]	119	45	2.2	1	<0.01	56.0	42.4	1500	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	419.62	678.77
[show peptides]	119	33	1.8	1	<0.05	44.1	42.4	1500	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	419.62	678.77
[show peptides]	120	1050	42.9	17	<0.01	42.5	41.3	27	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	902	38.3	14	<0.01	42.8	41.3	27	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	902	43.7	14	<0.01	37.7	41.3	27	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	902	43.7	14	<0.01	37.7	41.3	27	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	839	47.4	14	<0.01	42.6	41.3	27	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2744.06	696.96
[show peptides]	120	743	32.8	11	<0.01	34.3	41.3	27	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	625	29.8	11	<0.01	44.1	41.3	27	-0.293	AT5G23120.1	HCF136, photosystem II stability/assembly factor, chloroplast (HCF136)	g) auxiliary proteins	I) photophosphorylation	plastid	2744.06	696.96
[show peptides]	120	579	28.9	11	<0.01	43.9	41.3	27	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	579	29.1	11	<0.01	43.6	41.3	27	-0.336	AT1G03630.2	POR C, protochlorophyllide oxidoreductase C (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	489	22.6	9	<0.01	40.5	41.3	27	-0.262	AT2G35490.1	Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	417	15.9	7	<0.01	50.5	41.3	27	-0.135	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT3G15520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	399	20.6	6	<0.01	40.9	41.3	27	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2744.06	696.96
[show peptides]	120	395	18.8	8	<0.01	45.8	41.3	27	-0.178	AT1G51110.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT1G51110.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	367	25.1	7	<0.01	43.6	41.3	27	-0.102	AT2G40490.1	HEME2, Uroporphyrinogen decarboxylase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	337	19.7	7	<0.01	46.1	41.3	27	-0.284	AT1G77490.1	TAPX, thylakoidal ascorbate peroxidase	antioxidants	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	253	16.4	6	<0.01	41.5	41.3	27	-0.276	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	233	14.6	5	<0.01	43.2	41.3	27	-0.328	AT5G20140.1	SOUL heme-binding family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	233	13.9	5	<0.01	44.9	41.3	27	-0.294	AT5G20140.2	SOUL heme-binding family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	211	23.4	6	<0.01	41.8	41.3	27	-0.302	AT1G52510.1	Alpha/beta-Hydrolases superfamily protein (AT1G52510.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	211	30.9	6	<0.01	32.1	41.3	27	-0.250	AT1G52510.2	Alpha/beta-Hydrolases superfamily protein (AT1G52510.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	167	5.7	3	<0.01	52.0	41.3	27	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	167	6.1	3	<0.01	49.1	41.3	27	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	167	6.1	3	<0.01	48.5	41.3	27	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2744.06	696.96
[show peptides]	120	153	12.6	4	<0.01	43.9	41.3	27	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2744.06	696.96
[show peptides]	120	146	7.2	3	<0.01	53.9	41.3	27	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2744.06	696.96
[show peptides]	120	99	6.5	3	<0.01	43.4	41.3	27	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	99	6.5	3	<0.01	43.4	41.3	27	-0.198	AT4G27440.2	PORB, protochlorophyllide oxidoreductase B (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	80	5.1	2	<0.01	43.7	41.3	27	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	77	7.5	2	<0.01	30.2	41.3	27	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2744.06	696.96
[show peptides]	120	75	5.9	2	<0.01	41.7	41.3	27	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 1)	sulfur metabolism	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	75	5.9	2	<0.01	41.7	41.3	27	0.018	AT2G43750.2	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 2)	sulfur metabolism	VI) other metabolic pathways	plastid	2744.06	696.96
[show peptides]	120	51	4.1	1	<0.01	41.0	41.3	27	0.044	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.06	696.96
[show peptides]	120	51	2.3	1	<0.01	42.7	41.3	27	-0.140	AT4G27800.1	TAP38, PPH1, thylakoid-associated phosphatase 38 (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2744.06	696.96
[show peptides]	120	51	2.7	1	<0.01	36.9	41.3	27	-0.166	AT4G27800.2	TAP38, PPH1, thylakoid-associated phosphatase 38 (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2744.06	696.96
[show peptides]	120	51	2.8	1	<0.01	35.9	41.3	27	-0.197	AT4G27800.3	TAP38, PPH1, thylakoid-associated phosphatase 38 (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2744.06	696.96
[show peptides]	120	40	1.7	1	<0.01	76.8	41.3	27	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2744.06	696.96
[show peptides]	121	636	23.8	11	<0.01	61.1	91.6	95	-0.404	AT5G26000.1	TGG1, BGLU38, thioglucoside glucohydrolase 1	glucosinolate metabolism	VI) other metabolic pathways	vacuole	2304.71	294.38
[show peptides]	121	174	7.0	5	<0.01	102.1	91.6	95	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2304.71	294.38
[show peptides]	121	77	5.1	2	<0.01	47.4	91.6	95	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2304.71	294.38
[show peptides]	121	77	5.1	2	<0.01	47.4	91.6	95	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2304.71	294.38
[show peptides]	121	77	5.1	2	<0.01	47.4	91.6	95	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2304.71	294.38
[show peptides]	121	51	3.8	1	<0.01	42.8	91.6	95	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2304.71	294.38
[show peptides]	121	51	4.7	1	<0.01	34.3	91.6	95	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2304.71	294.38
[show peptides]	121	51	4.3	1	<0.01	37.7	91.6	95	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2304.71	294.38
[show peptides]	121	51	4.3	1	<0.01	37.7	91.6	95	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2304.71	294.38
[show peptides]	121	32	2.9	1	<0.05	27.5	91.6	95	-0.566	AT5G53030.1	Protein of unknown function (DUF688) (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2304.71	294.38
[show peptides]	121	32	3.1	1	<0.05	25.1	91.6	95	-0.501	AT5G53030.2	Protein of unknown function (DUF688) (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2304.71	294.38
[show peptides]	122	277	9.9	4	<0.01	51.9	42.4	700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	951.79	679.26
[show peptides]	123	1684	54.1	23	<0.01	42.9	41.3	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2244.22	696.85
[show peptides]	123	1668	52.0	23	<0.01	43.0	41.3	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2244.22	696.85
[show peptides]	123	590	25.0	9	<0.01	42.5	41.3	110	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2244.22	696.85
[show peptides]	123	413	20.8	5	<0.01	34.3	41.3	110	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2244.22	696.85
[show peptides]	123	293	11.5	5	<0.01	42.3	41.3	110	-0.249	AT2G01140.1	Aldolase superfamily protein (AT2G01140.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2244.22	696.85
[show peptides]	123	174	7.5	4	<0.01	59.2	41.3	110	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1 (Gene model 1)	other transporters	III) transport	plastid	2244.22	696.85
[show peptides]	123	154	8.9	3	<0.01	47.7	41.3	110	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2244.22	696.85
[show peptides]	123	123	5.8	2	<0.01	42.6	41.3	110	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2244.22	696.85
[show peptides]	123	107	10.1	2	<0.01	36.9	41.3	110	-0.137	AT1G13440.1	GapC-2, glyceraldehyde-3-phosphate dehydrogenase C subunit 2	calvin cycle	II) carbon fixation	cytosol	2244.22	696.85
[show peptides]	123	68	4.3	1	<0.01	40.9	41.3	110	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2244.22	696.85
[show peptides]	123	55	3.0	1	<0.01	28.2	41.3	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2244.22	696.85
[show peptides]	123	37	2.4	1	<0.01	44.8	41.3	110	-0.031	AT1G09795.1	ATATP-PRT2, HISN1B, ATP-PRT2, ATP phosphoribosyl transferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2244.22	696.85
[show peptides]	124	329	11.8	6	<0.01	51.9	42.3	1150	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	616.06	680.40
[show peptides]	125	1038	36.6	16	<0.01	42.5	40.6	170	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	1969.89	709.21
[show peptides]	125	698	29.5	11	<0.01	44.1	40.6	170	-0.293	AT5G23120.1	HCF136, photosystem II stability/assembly factor, chloroplast (HCF136)	g) auxiliary proteins	I) photophosphorylation	plastid	1969.89	709.21
[show peptides]	125	473	23.5	8	<0.01	36.7	40.6	170	0.220	AT5G54770.1	THI1, TZ, THI4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89	709.21
[show peptides]	125	444	20.1	7	<0.01	40.9	40.6	170	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1969.89	709.21
[show peptides]	125	339	16.5	7	<0.01	43.4	40.6	170	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1969.89	709.21
[show peptides]	125	339	16.5	7	<0.01	43.4	40.6	170	-0.198	AT4G27440.2	PORB, protochlorophyllide oxidoreductase B (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1969.89	709.21
[show peptides]	125	283	14.5	5	<0.01	43.9	40.6	170	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1969.89	709.21
[show peptides]	125	283	14.5	5	<0.01	43.6	40.6	170	-0.336	AT1G03630.2	POR C, protochlorophyllide oxidoreductase C (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1969.89	709.21
[show peptides]	125	184	13.0	5	<0.01	42.6	40.6	170	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1969.89	709.21
[show peptides]	125	177	12.6	4	<0.01	43.9	40.6	170	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1969.89	709.21
[show peptides]	125	120	7.8	3	<0.01	43.2	40.6	170	-0.292	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein (AT2G27680.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89	709.21
[show peptides]	125	111	10.3	3	<0.01	41.3	40.6	170	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89	709.21
[show peptides]	125	89	4.2	2	<0.01	52.0	40.6	170	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1969.89	709.21
[show peptides]	125	89	4.5	2	<0.01	49.1	40.6	170	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1969.89	709.21
[show peptides]	125	89	4.5	2	<0.01	48.5	40.6	170	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1969.89	709.21
[show peptides]	125	79	3.4	1	<0.01	51.9	40.6	170	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1969.89	709.21
[show peptides]	125	75	2.4	1	<0.01	50.5	40.6	170	-0.135	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT3G15520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89	709.21
[show peptides]	125	58	2.5	1	<0.01	44.2	40.6	170	-0.093	AT1G30120.1	PDH-E1 beta, pyruvate dehydrogenase E1 beta	fatty acid metabolism	VI) other metabolic pathways	plastid	1969.89	709.21
[show peptides]	126	37	3.8	1	<0.05	42.8	40.7	140	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2091.76	707.39
[show peptides]	126	37	4.7	1	<0.05	34.3	40.7	140	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2091.76	707.39
[show peptides]	126	37	4.3	1	<0.05	37.7	40.7	140	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2091.76	707.39
[show peptides]	126	37	4.3	1	<0.05	37.7	40.7	140	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2091.76	707.39
[show peptides]	127	1135	37.1	19	<0.01	42.5	40.0	250	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	1697.65	719.73
[show peptides]	127	1097	41.1	19	<0.01	42.8	40.0	250	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1697.65	719.73
[show peptides]	127	1097	46.9	19	<0.01	37.7	40.0	250	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1697.65	719.73
[show peptides]	127	1097	46.9	19	<0.01	37.7	40.0	250	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	1697.65	719.73
[show peptides]	127	864	36.0	15	<0.01	34.3	40.0	250	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	1697.65	719.73
[show peptides]	127	702	28.4	11	<0.01	40.9	40.0	250	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	434	18.2	7	<0.01	51.9	40.0	250	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	278	16.6	5	<0.01	35.4	40.0	250	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	222	10.8	4	<0.01	39.5	40.0	250	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	199	12.0	4	<0.01	28.2	40.0	250	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	83	2.6	1	<0.01	56.0	40.0	250	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	76	3.1	1	<0.01	38.9	40.0	250	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	72	2.8	1	<0.01	41.3	40.0	250	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1697.65	719.73
[show peptides]	127	62	5.6	1	<0.01	24.2	40.0	250	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1697.65	719.73
[show peptides]	127	31	1.8	1	<0.05	44.1	40.0	250	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1697.65	719.73
[show peptides]	128	1497	39.9	22	<0.01	40.9	38.5	300	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	748.11
[show peptides]	128	962	47.8	16	<0.01	53.9	38.5	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	748.11
[show peptides]	128	265	11.2	5	<0.01	55.3	38.5	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	748.11
[show peptides]	128	118	8.7	3	<0.01	41.2	38.5	300	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 1)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	1562.91	748.11
[show peptides]	128	118	9.1	3	<0.01	39.2	38.5	300	-0.408	AT1G20020.2	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 2)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	1562.91	748.11
[show peptides]	128	118	8.7	3	<0.01	41.2	38.5	300	-0.381	AT1G20020.3	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 3)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	1562.91	748.11
[show peptides]	128	93	3.4	1	<0.01	51.9	38.5	300	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1562.91	748.11
[show peptides]	128	46	2.8	1	<0.01	41.3	38.5	300	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1562.91	748.11
[show peptides]	128	33	1.8	1	<0.01	44.1	38.5	300	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1562.91	748.11
[show peptides]	129	711	35.6	13	<0.01	38.0	39.6	1500	-0.214	AT1G64770.1	PnsB2	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	728.41
[show peptides]	129	126	6.8	3	<0.01	42.8	39.6	1500	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	419.62	728.41
[show peptides]	129	126	8.5	3	<0.01	34.3	39.6	1500	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	419.62	728.41
[show peptides]	129	126	7.7	3	<0.01	37.7	39.6	1500	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	419.62	728.41
[show peptides]	129	126	7.7	3	<0.01	37.7	39.6	1500	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	419.62	728.41
[show peptides]	129	86	5.0	2	<0.01	43.4	39.6	1500	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	419.62	728.41
[show peptides]	129	86	5.0	2	<0.01	43.4	39.6	1500	-0.198	AT4G27440.2	PORB, protochlorophyllide oxidoreductase B (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	419.62	728.41
[show peptides]	129	64	3.4	1	<0.01	51.9	39.6	1500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	419.62	728.41
[show peptides]	129	37	3.7	1	<0.05	28.2	39.6	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62	728.41
[show peptides]	130	1049	46.0	18	<0.01	41.3	40.0	42	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23	721.10
[show peptides]	130	492	20.7	8	<0.01	53.9	40.0	42	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2621.23	721.10
[show peptides]	130	486	25.8	10	<0.01	43.7	40.0	42	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23	721.10
[show peptides]	130	434	22.9	9	<0.01	42.4	40.0	42	-0.111	AT3G55800.1	SBPASE, sedoheptulose-bisphosphatase	calvin cycle	II) carbon fixation	plastid	2621.23	721.10
[show peptides]	130	341	24.5	6	<0.01	37.0	40.0	42	-0.078	AT5G03880.1	Thioredoxin family protein	antioxidants	VI) other metabolic pathways	plastid	2621.23	721.10
[show peptides]	130	339	16.0	7	<0.01	55.3	40.0	42	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2621.23	721.10
[show peptides]	130	273	16.4	5	<0.01	40.9	40.0	42	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2621.23	721.10
[show peptides]	130	252	13.0	5	<0.01	41.3	40.0	42	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2621.23	721.10
[show peptides]	130	233	22.5	5	<0.01	37.9	40.0	42	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23	721.10
[show peptides]	130	161	9.8	4	<0.01	54.0	40.0	42	0.702	AT1G32080.1	Membrane protein, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23	721.10
[show peptides]	130	153	11.6	4	<0.01	50.1	40.0	42	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2621.23	721.10
[show peptides]	130	84	4.7	2	<0.01	49.1	40.0	42	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2621.23	721.10
[show peptides]	130	68	4.4	1	<0.01	39.9	40.0	42	-0.155	AT1G29670.1	GDSL-like Lipase, Acylhydrolase superfamily protein	fatty acid metabolism	VI) other metabolic pathways	extracellular	2621.23	721.10
[show peptides]	130	62	4.8	2	<0.01	41.1	40.0	42	0.071	AT5G57850.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23	721.10
[show peptides]	130	60	9.5	2	<0.01	37.6	40.0	42	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family (Gene model 1)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2621.23	721.10
[show peptides]	130	60	11.3	2	<0.01	31.6	40.0	42	-0.274	AT3G63490.2	Rpl1/L10, Ribosomal protein L1p/L10e family (Gene model 2)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2621.23	721.10
[show peptides]	130	59	2.3	1	<0.01	52.0	40.0	42	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2621.23	721.10
[show peptides]	130	59	2.5	1	<0.01	48.5	40.0	42	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2621.23	721.10
[show peptides]	130	56	3.9	1	<0.01	30.2	40.0	42	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2621.23	721.10
[show peptides]	130	51	2.8	1	<0.01	39.4	40.0	42	-0.048	AT1G78140.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23	721.10
[show peptides]	130	41	1.2	1	<0.01	73.2	40.0	42	-0.125	AT1G06430.1	FtsH8, FtsH protease 8	proteases	V) protein folding & processing	plastid	2621.23	721.10
[show peptides]	130	39	3.4	1	<0.01	29.7	40.0	42	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Gene mode	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2621.23	721.10
[show peptides]	130	38	3.0	1	<0.01	42.4	40.0	42	0.078	AT3G47520.1	MDH, malate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23	721.10
[show peptides]	131	494	29.6	11	<0.01	38.0	39.3	1700	-0.214	AT1G64770.1	PnsB2	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	733.81
[show peptides]	131	64	3.0	1	<0.01	43.4	39.3	1700	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	303.56	733.81
[show peptides]	131	64	3.0	1	<0.01	43.4	39.3	1700	-0.198	AT4G27440.2	PORB, protochlorophyllide oxidoreductase B (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	303.56	733.81
[show peptides]	131	53	3.8	1	<0.01	42.8	39.3	1700	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	303.56	733.81
[show peptides]	131	53	4.7	1	<0.01	34.3	39.3	1700	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	303.56	733.81
[show peptides]	131	53	4.3	1	<0.01	37.7	39.3	1700	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	303.56	733.81
[show peptides]	131	53	4.3	1	<0.01	37.7	39.3	1700	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	303.56	733.81
[show peptides]	131	43	3.4	1	<0.05	51.9	39.3	1700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	303.56	733.81
[show peptides]	131	41	0.4	1	<0.05	230.9	39.3	1700	0.042	AT1G44120.1	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	303.56	733.81
[show peptides]	132	1115	48.0	21	<0.01	53.0	38.8	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	742.21
[show peptides]	132	922	38.3	16	<0.01	40.9	38.8	430	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1357.29	742.21
[show peptides]	132	94	6.5	2	<0.01	41.3	38.8	430	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1357.29	742.21
[show peptides]	132	78	8.9	2	<0.01	20.2	38.8	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	742.21
[show peptides]	133	841	43.4	13	<0.01	41.7	38.2	20	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 1)	sulfur metabolism	VI) other metabolic pathways	plastid	2827.00	754.41
[show peptides]	133	841	43.4	13	<0.01	41.7	38.2	20	0.018	AT2G43750.2	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 2)	sulfur metabolism	VI) other metabolic pathways	plastid	2827.00	754.41
[show peptides]	133	783	31.6	11	<0.01	40.9	38.2	20	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2827.00	754.41
[show peptides]	133	773	40.9	13	<0.01	41.2	38.2	20	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 1)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2827.00	754.41
[show peptides]	133	773	43.1	13	<0.01	39.2	38.2	20	-0.408	AT1G20020.2	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 2)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2827.00	754.41
[show peptides]	133	738	34.4	12	<0.01	41.2	38.2	20	-0.381	AT1G20020.3	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 3)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2827.00	754.41
[show peptides]	133	585	31.3	11	<0.01	42.4	38.2	20	-0.111	AT3G55800.1	SBPASE, sedoheptulose-bisphosphatase	calvin cycle	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	575	24.1	9	<0.01	43.7	38.2	20	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2827.00	754.41
[show peptides]	133	546	36.1	11	<0.01	40.3	38.2	20	-0.365	AT5G66190.1	Ferredoxin-NADP(+)-oxidoreductase 1, ATLFNR1, FNR1	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2827.00	754.41
[show peptides]	133	422	26.0	9	<0.01	42.5	38.2	20	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	338	20.3	6	<0.01	37.7	38.2	20	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	338	20.3	6	<0.01	37.7	38.2	20	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	310	17.6	6	<0.01	41.3	38.2	20	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2827.00	754.41
[show peptides]	133	301	19.9	5	<0.01	34.3	38.2	20	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	159	11.8	4	<0.01	41.0	38.2	20	-0.134	AT5G08280.1	HEMC, hydroxymethylbilane synthase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2827.00	754.41
[show peptides]	133	145	10.1	3	<0.01	41.0	38.2	20	0.044	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2827.00	754.41
[show peptides]	133	85	5.9	2	<0.01	43.9	38.2	20	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2827.00	754.41
[show peptides]	133	84	4.7	2	<0.01	49.1	38.2	20	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	72	4.7	2	<0.01	43.4	38.2	20	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2827.00	754.41
[show peptides]	133	72	4.7	2	<0.01	43.4	38.2	20	-0.198	AT4G27440.2	PORB, protochlorophyllide oxidoreductase B (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2827.00	754.41
[show peptides]	133	58	2.3	1	<0.01	52.0	38.2	20	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	58	2.5	1	<0.01	48.5	38.2	20	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2827.00	754.41
[show peptides]	133	41	2.5	1	<0.01	47.8	38.2	20	0.178	AT1G05140.1	Peptidase M50 family protein	proteases	V) protein folding & processing	plastid	2827.00	754.41
[show peptides]	134	432	17.7	6	<0.01	40.9	39.0	540	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	738.48
[show peptides]	134	234	10.8	4	<0.01	39.5	39.0	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03	738.48
[show peptides]	134	182	8.8	3	<0.01	38.9	39.0	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03	738.48
[show peptides]	134	114	3.4	1	<0.01	51.9	39.0	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03	738.48
[show peptides]	134	49	1.1	1	<0.01	82.5	39.0	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03	738.48
[show peptides]	134	40	2.8	1	<0.01	41.3	39.0	540	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1155.03	738.48
[show peptides]	135	729	33.0	13	<0.01	35.5	37.4	70	-0.405	AT5G17710.1	EMB1241, Co-chaperone GrpE family protein (Gene model 1)	other HSP	V) protein folding & processing	plastid	2435.76	770.68
[show peptides]	135	729	32.8	13	<0.01	35.7	37.4	70	-0.401	AT5G17710.2	EMB1241, Co-chaperone GrpE family protein (Gene model 2)	other HSP	V) protein folding & processing	plastid	2435.76	770.68
[show peptides]	135	601	38.4	13	<0.01	37.6	37.4	70	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family (Gene model 1)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2435.76	770.68
[show peptides]	135	334	19.1	8	<0.01	37.4	37.4	70	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2435.76	770.68
[show peptides]	135	328	21.3	6	<0.01	37.9	37.4	70	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2435.76	770.68
[show peptides]	135	308	20.5	7	<0.01	41.2	37.4	70	-0.070	AT2G05990.1	MOD1, ENR1, NAD(P)-binding Rossmann-fold superfamily protein (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2435.76	770.68
[show peptides]	135	308	20.5	7	<0.01	41.2	37.4	70	-0.070	AT2G05990.2	MOD1, ENR1, NAD(P)-binding Rossmann-fold superfamily protein (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2435.76	770.68
[show peptides]	135	284	14.3	6	<0.01	50.1	37.4	70	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2435.76	770.68
[show peptides]	135	172	9.5	3	<0.01	42.8	37.4	70	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2435.76	770.68
[show peptides]	135	172	12.0	3	<0.01	34.3	37.4	70	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2435.76	770.68
[show peptides]	135	172	10.9	3	<0.01	37.7	37.4	70	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2435.76	770.68
[show peptides]	135	172	10.9	3	<0.01	37.7	37.4	70	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2435.76	770.68
[show peptides]	135	165	7.5	3	<0.01	41.3	37.4	70	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2435.76	770.68
[show peptides]	135	143	17.9	3	<0.01	29.9	37.4	70	-0.519	ATCG00830.1	Rpl2.1, Ribosomal protein L2	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2435.76	770.68
[show peptides]	135	95	6.7	2	<0.01	36.9	37.4	70	-0.140	AT4G34090.1	AT4G34090.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2435.76	770.68
[show peptides]	135	95	6.6	2	<0.01	37.0	37.4	70	-0.127	AT4G34090.2	AT4G34090.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2435.76	770.68
[show peptides]	135	95	5.6	2	<0.01	44.0	37.4	70	0.016	AT4G34090.3	AT4G34090.3	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2435.76	770.68
[show peptides]	135	94	2.8	2	<0.01	79.9	37.4	70	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2435.76	770.68
[show peptides]	135	56	3.4	1	<0.01	44.6	37.4	70	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 1)	other transporters	III) transport	plastid	2435.76	770.68
[show peptides]	135	56	3.5	1	<0.01	43.5	37.4	70	0.496	AT5G46110.3	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 3)	other transporters	III) transport	plastid	2435.76	770.68
[show peptides]	135	56	3.4	1	<0.01	45.2	37.4	70	0.543	AT5G46110.4	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 4)	other transporters	III) transport	plastid	2435.76	770.68
[show peptides]	135	55	3.0	1	<0.01	28.2	37.4	70	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2435.76	770.68
[show peptides]	135	51	3.4	1	<0.01	29.7	37.4	70	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Gene mode	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2435.76	770.68
[show peptides]	135	51	3.4	1	<0.01	29.7	37.4	70	0.430	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Gene mode	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2435.76	770.68
[show peptides]	135	35	4.2	1	<0.01	35.1	37.4	70	-0.746	AT2G24060.1	Translation initiation factor 3 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2435.76	770.68
[show peptides]	136	833	31.5	13	<0.01	41.2	36.9	79	-0.070	AT2G05990.1	MOD1, ENR1, NAD(P)-binding Rossmann-fold superfamily protein (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2389.41	780.67
[show peptides]	136	833	31.5	13	<0.01	41.2	36.9	79	-0.070	AT2G05990.2	MOD1, ENR1, NAD(P)-binding Rossmann-fold superfamily protein (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2389.41	780.67
[show peptides]	136	551	30.1	9	<0.01	42.5	36.9	79	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2389.41	780.67
[show peptides]	136	436	30.0	7	<0.01	34.3	36.9	79	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2389.41	780.67
[show peptides]	136	262	18.8	6	<0.01	37.4	36.9	79	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.41	780.67
[show peptides]	136	192	16.3	5	<0.01	37.9	36.9	79	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.41	780.67
[show peptides]	136	191	20.8	4	<0.01	29.9	36.9	79	-0.519	ATCG00830.1	Rpl2.1, Ribosomal protein L2	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2389.41	780.67
[show peptides]	136	182	6.7	3	<0.01	49.9	36.9	79	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2389.41	780.67
[show peptides]	136	182	7.9	3	<0.01	42.6	36.9	79	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2389.41	780.67
[show peptides]	136	169	12.2	3	<0.01	36.3	36.9	79	-0.147	AT1G21440.1	Phosphoenolpyruvate carboxylase family protein (AT1G21440.1)	other proteins	II) carbon fixation	plastid	2389.41	780.67
[show peptides]	136	117	6.3	2	<0.01	44.6	36.9	79	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 1)	other transporters	III) transport	plastid	2389.41	780.67
[show peptides]	136	117	6.5	2	<0.01	43.5	36.9	79	0.496	AT5G46110.3	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 3)	other transporters	III) transport	plastid	2389.41	780.67
[show peptides]	136	117	6.3	2	<0.01	45.2	36.9	79	0.543	AT5G46110.4	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 4)	other transporters	III) transport	plastid	2389.41	780.67
[show peptides]	136	110	6.7	2	<0.01	36.9	36.9	79	-0.140	AT4G34090.1	AT4G34090.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2389.41	780.67
[show peptides]	136	110	6.6	2	<0.01	37.0	36.9	79	-0.127	AT4G34090.2	AT4G34090.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2389.41	780.67
[show peptides]	136	110	5.6	2	<0.01	44.0	36.9	79	0.016	AT4G34090.3	AT4G34090.3	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2389.41	780.67
[show peptides]	136	94	8.3	3	<0.01	35.1	36.9	79	-0.746	AT2G24060.1	Translation initiation factor 3 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2389.41	780.67
[show peptides]	136	92	6.7	2	<0.01	28.2	36.9	79	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2389.41	780.67
[show peptides]	136	79	4.0	1	<0.01	32.6	36.9	79	-0.244	AT2G33800.1	Rps5, Ribosomal protein S5 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2389.41	780.67
[show peptides]	136	70	6.5	2	<0.01	36.6	36.9	79	-0.096	AT1G77060.1	Phosphoenolpyruvate carboxylase family protein (AT1G77060.1)	other proteins	II) carbon fixation	plastid	2389.41	780.67
[show peptides]	136	64	3.4	1	<0.01	29.7	36.9	79	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Gene mode	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2389.41	780.67
[show peptides]	136	64	3.4	1	<0.01	29.7	36.9	79	0.430	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Gene mode	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2389.41	780.67
[show peptides]	136	63	5.1	2	<0.01	37.4	36.9	79	0.096	AT5G09660.1	PMDH2, peroxisomal NAD-malate dehydrogenase 2 (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2389.41	780.67
[show peptides]	136	63	5.4	2	<0.01	41.3	36.9	79	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2389.41	780.67
[show peptides]	136	56	2.8	1	<0.01	41.3	36.9	79	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.41	780.67
[show peptides]	137	1008	36.6	17	<0.01	35.4	33.6	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.29	854.64
[show peptides]	137	516	22.7	9	<0.01	38.9	33.6	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1669.29	854.64
[show peptides]	137	283	10.8	4	<0.01	39.5	33.6	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.29	854.64
[show peptides]	138	585	22.7	10	<0.01	38.9	33.2	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	863.37
[show peptides]	138	341	11.6	5	<0.01	39.5	33.2	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	863.37
[show peptides]	138	83	7.3	2	<0.01	29.2	33.2	560	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	863.37
[show peptides]	138	83	9.2	2	<0.01	23.7	33.2	560	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	1106.40	863.37
[show peptides]	138	83	7.3	2	<0.01	29.2	33.2	560	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	1106.40	863.37
[show peptides]	138	59	4.8	1	<0.01	27.7	33.2	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40	863.37
[show peptides]	138	49	1.1	1	<0.01	82.5	33.2	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40	863.37
[show peptides]	139	1307	47.6	22	<0.01	42.4	36.5	17	-0.111	AT3G55800.1	SBPASE, sedoheptulose-bisphosphatase	calvin cycle	II) carbon fixation	plastid	2867.81	788.87
[show peptides]	139	514	26.0	8	<0.01	40.9	36.5	17	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2867.81	788.87
[show peptides]	139	468	23.8	8	<0.01	41.3	36.5	17	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	457	21.3	8	<0.01	43.7	36.5	17	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	313	20.1	7	<0.01	42.4	36.5	17	0.078	AT3G47520.1	MDH, malate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	271	14.1	5	<0.01	41.0	36.5	17	-0.134	AT5G08280.1	HEMC, hydroxymethylbilane synthase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2867.81	788.87
[show peptides]	139	262	17.1	6	<0.01	41.2	36.5	17	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 1)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2867.81	788.87
[show peptides]	139	262	18.0	6	<0.01	39.2	36.5	17	-0.408	AT1G20020.2	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 2)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2867.81	788.87
[show peptides]	139	262	17.1	6	<0.01	41.2	36.5	17	-0.381	AT1G20020.3	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2 (Gene model 3)	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2867.81	788.87
[show peptides]	139	141	12.0	4	<0.01	41.7	36.5	17	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 1)	sulfur metabolism	VI) other metabolic pathways	plastid	2867.81	788.87
[show peptides]	139	141	12.0	4	<0.01	41.7	36.5	17	0.018	AT2G43750.2	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B (Gene model 2)	sulfur metabolism	VI) other metabolic pathways	plastid	2867.81	788.87
[show peptides]	139	136	13.9	4	<0.01	37.0	36.5	17	-0.078	AT5G03880.1	Thioredoxin family protein	antioxidants	VI) other metabolic pathways	plastid	2867.81	788.87
[show peptides]	139	101	3.7	2	<0.01	74.2	36.5	17	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2867.81	788.87
[show peptides]	139	94	4.7	2	<0.01	49.1	36.5	17	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2867.81	788.87
[show peptides]	139	68	2.3	1	<0.01	52.0	36.5	17	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2867.81	788.87
[show peptides]	139	68	2.5	1	<0.01	48.5	36.5	17	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2867.81	788.87
[show peptides]	139	61	2.2	1	<0.01	35.8	36.5	17	-0.040	AT4G36530.1	Alpha/beta-Hydrolases superfamily protein (AT4G36530.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	61	1.9	1	<0.01	35.8	36.5	17	-0.040	AT4G36530.2	Alpha/beta-Hydrolases superfamily protein (AT4G36530.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	45	2.8	1	<0.01	39.4	36.5	17	-0.048	AT1G78140.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	42	2.5	1	<0.01	47.8	36.5	17	0.178	AT1G05140.1	Peptidase M50 family protein	proteases	V) protein folding & processing	plastid	2867.81	788.87
[show peptides]	139	36	2.5	1	<0.05	39.6	36.5	17	-0.000	AT5G38520.1	Alpha/beta-Hydrolases superfamily protein (AT5G38520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	36	2.4	1	<0.05	41.0	36.5	17	-0.009	AT5G38520.2	Alpha/beta-Hydrolases superfamily protein (AT5G38520.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.81	788.87
[show peptides]	139	34	2.2	1	<0.05	55.3	36.5	17	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2867.81	788.87
[show peptides]	140	809	29.7	13	<0.01	53.9	36.5	31	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2705.68	788.36
[show peptides]	140	663	30.5	9	<0.01	37.4	36.5	31	0.096	AT5G09660.1	PMDH2, peroxisomal NAD-malate dehydrogenase 2 (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2705.68	788.36
[show peptides]	140	663	32.4	9	<0.01	35.0	36.5	31	0.147	AT5G09660.2	PMDH2, peroxisomal NAD-malate dehydrogenase 2 (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2705.68	788.36
[show peptides]	140	489	37.0	10	<0.01	37.6	36.5	31	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family (Gene model 1)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2705.68	788.36
[show peptides]	140	473	40.6	12	<0.01	37.4	36.5	31	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68	788.36
[show peptides]	140	399	25.6	8	<0.01	41.3	36.5	31	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68	788.36
[show peptides]	140	383	26.6	6	<0.01	37.9	36.5	31	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68	788.36
[show peptides]	140	367	18.1	7	<0.01	41.3	36.5	31	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2705.68	788.36
[show peptides]	140	366	17.5	7	<0.01	50.1	36.5	31	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2705.68	788.36
[show peptides]	140	366	29.8	7	<0.01	37.0	36.5	31	-0.078	AT5G03880.1	Thioredoxin family protein	antioxidants	VI) other metabolic pathways	plastid	2705.68	788.36
[show peptides]	140	233	12.8	5	<0.01	55.3	36.5	31	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2705.68	788.36
[show peptides]	140	152	11.4	3	<0.01	31.1	36.5	31	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2705.68	788.36
[show peptides]	140	78	5.5	2	<0.01	54.0	36.5	31	0.702	AT1G32080.1	Membrane protein, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68	788.36
[show peptides]	140	72	5.7	2	<0.01	42.4	36.5	31	0.078	AT3G47520.1	MDH, malate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68	788.36
[show peptides]	140	48	3.4	1	<0.01	29.7	36.5	31	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Gene mode	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2705.68	788.36
[show peptides]	140	48	3.4	1	<0.01	29.7	36.5	31	0.430	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Gene mode	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2705.68	788.36
[show peptides]	140	37	3.8	1	<0.01	35.4	36.5	31	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	2705.68	788.36
[show peptides]	141	494	22.7	9	<0.01	38.9	32.7	1000	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	725.81	874.61
[show peptides]	141	343	11.6	5	<0.01	39.5	32.7	1000	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	725.81	874.61
[show peptides]	141	232	12.0	4	<0.01	28.2	32.7	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.81	874.61
[show peptides]	141	148	12.1	3	<0.01	28.6	32.7	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.81	874.61
[show peptides]	142	433	16.4	8	<0.01	51.6	33.2	210	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1840.66	862.91
[show peptides]	142	262	14.8	7	<0.01	52.0	33.2	210	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1840.66	862.91
[show peptides]	142	262	15.7	7	<0.01	49.1	33.2	210	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1840.66	862.91
[show peptides]	142	262	15.9	7	<0.01	48.5	33.2	210	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1840.66	862.91
[show peptides]	142	156	19.0	4	<0.01	27.5	33.2	210	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1840.66	862.91
[show peptides]	143	73	7.5	2	<0.05	28.7	34.4	94	-0.118	AT2G05100.1	Lhcb2.1	b) photosystem II	I) photophosphorylation	plastid	2312.11	833.90
[show peptides]	144	518	22.7	9	<0.01	38.9	32.8	830	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	829.77	872.51
[show peptides]	144	345	11.6	5	<0.01	39.5	32.8	830	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	829.77	872.51
[show peptides]	144	189	12.0	4	<0.01	28.2	32.8	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.77	872.51
[show peptides]	144	125	12.1	3	<0.01	28.6	32.8	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.77	872.51
[show peptides]	144	58	3.8	1	<0.01	35.4	32.8	830	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	829.77	872.51
[show peptides]	145	240	11.6	5	<0.01	39.5	32.8	700	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	951.79	872.16
[show peptides]	145	95	3.7	1	<0.01	38.9	32.8	700	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	951.79	872.16
[show peptides]	145	35	1.2	1	<0.05	64.0	32.8	700	-0.128	AT4G34030.1	MCCB, 3-methylcrotonyl-CoA carboxylase	amino acid metabolism	VI) other metabolic pathways	mitochondrion	951.79	872.16
[show peptides]	146	522	22.9	8	<0.01	39.5	33.3	190	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1891.24	860.18
[show peptides]	146	476	28.0	9	<0.01	38.9	33.3	190	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1891.24	860.18
[show peptides]	146	298	26.4	6	<0.01	32.6	33.3	190	-0.244	AT2G33800.1	Rps5, Ribosomal protein S5 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1891.24	860.18
[show peptides]	146	136	8.5	3	<0.01	44.6	33.3	190	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 1)	other transporters	III) transport	plastid	1891.24	860.18
[show peptides]	146	136	8.8	3	<0.01	43.5	33.3	190	0.496	AT5G46110.3	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 3)	other transporters	III) transport	plastid	1891.24	860.18
[show peptides]	146	136	8.4	3	<0.01	45.2	33.3	190	0.543	AT5G46110.4	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 4)	other transporters	III) transport	plastid	1891.24	860.18
[show peptides]	146	128	11.6	3	<0.01	35.4	33.3	190	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1891.24	860.18
[show peptides]	146	108	9.0	3	<0.01	28.2	33.3	190	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1891.24	860.18
[show peptides]	146	85	8.3	2	<0.01	36.7	33.3	190	0.220	AT5G54770.1	THI1, TZ, THI4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1891.24	860.18
[show peptides]	147	769	43.7	16	<0.01	35.1	32.7	78	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2393.61	876.87
[show peptides]	147	691	43.8	15	<0.01	35.0	32.7	78	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2393.61	876.87
[show peptides]	147	544	30.9	11	<0.01	37.9	32.7	78	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2393.61	876.87
[show peptides]	147	261	11.7	4	<0.01	44.6	32.7	78	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 1)	other transporters	III) transport	plastid	2393.61	876.87
[show peptides]	147	261	12.0	4	<0.01	43.5	32.7	78	0.496	AT5G46110.3	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 3)	other transporters	III) transport	plastid	2393.61	876.87
[show peptides]	147	261	11.6	4	<0.01	45.2	32.7	78	0.543	AT5G46110.4	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 4)	other transporters	III) transport	plastid	2393.61	876.87
[show peptides]	147	180	14.3	5	<0.01	36.0	32.7	78	-0.488	AT3G53460.1	CP29, chloroplast RNA-binding protein 29 (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2393.61	876.87
[show peptides]	147	180	14.3	5	<0.01	36.0	32.7	78	-0.488	AT3G53460.2	CP29, chloroplast RNA-binding protein 29 (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2393.61	876.87
[show peptides]	147	180	14.3	5	<0.01	36.0	32.7	78	-0.488	AT3G53460.3	CP29, chloroplast RNA-binding protein 29 (Gene model 3)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2393.61	876.87
[show peptides]	147	180	13.5	5	<0.01	38.4	32.7	78	-0.358	AT3G53460.4	CP29, chloroplast RNA-binding protein 29 (Gene model 4)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2393.61	876.87
[show peptides]	147	178	12.1	4	<0.01	32.0	32.7	78	0.168	AT5G52100.1	Dihydrodipicolinate reductase bacterial/plant, crr1	g) auxiliary proteins	I) photophosphorylation	plastid	2393.61	876.87
[show peptides]	147	162	9.8	3	<0.01	42.8	32.7	78	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	162	9.8	3	<0.01	42.5	32.7	78	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	162	12.3	3	<0.01	34.3	32.7	78	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	162	11.1	3	<0.01	37.7	32.7	78	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	162	11.1	3	<0.01	37.7	32.7	78	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	155	14.2	4	<0.01	34.9	32.7	78	-0.178	AT4G18370.1	Deg5, DegP5, DegP protease 5, HHOA	proteases	V) protein folding & processing	plastid	2393.61	876.87
[show peptides]	147	150	7.2	2	<0.01	35.8	32.7	78	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.61	876.87
[show peptides]	147	131	10.1	3	<0.01	38.9	32.7	78	-0.283	AT4G28740.1	AT4G28740.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.61	876.87
[show peptides]	147	117	7.1	2	<0.01	33.8	32.7	78	-0.055	AT4G25080.1	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.61	876.87
[show peptides]	147	117	7.1	2	<0.01	33.8	32.7	78	-0.055	AT4G25080.2	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.61	876.87
[show peptides]	147	117	7.1	2	<0.01	33.8	32.7	78	-0.055	AT4G25080.3	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 3)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.61	876.87
[show peptides]	147	117	9.0	2	<0.01	27.1	32.7	78	-0.223	AT4G25080.4	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 4)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.61	876.87
[show peptides]	147	117	7.1	2	<0.01	33.8	32.7	78	-0.055	AT4G25080.5	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 5)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.61	876.87
[show peptides]	147	108	11.7	3	<0.01	33.4	32.7	78	-0.363	AT5G09650.1	AtPPa6, PPa6, pyrophosphorylase 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2393.61	876.87
[show peptides]	147	100	16.4	3	<0.01	29.4	32.7	78	-0.334	AT4G17600.1	LIL3:1, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2393.61	876.87
[show peptides]	147	76	5.4	1	<0.01	41.9	32.7	78	0.267	AT3G51820.1	ATG4, G4, CHLG, UbiA prenyltransferase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.61	876.87
[show peptides]	147	71	8.3	2	<0.01	31.3	32.7	78	-0.008	AT1G16880.1	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2393.61	876.87
[show peptides]	147	71	11.3	2	<0.01	22.7	32.7	78	0.084	AT1G16880.2	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2393.61	876.87
[show peptides]	147	69	2.1	1	<0.01	41.5	32.7	78	-0.120	AT3G08580.1	AAC1, ADP/ATP carrier 1 (Gene model 1)	other transporters	III) transport	mitochondrion	2393.61	876.87
[show peptides]	147	69	2.1	1	<0.01	41.5	32.7	78	-0.120	AT3G08580.2	AAC1, ADP/ATP carrier 1 (Gene model 2)	other transporters	III) transport	mitochondrion	2393.61	876.87
[show peptides]	147	60	3.2	1	<0.01	34.9	32.7	78	-0.555	AT5G24490.1	30S ribosomal protein, putative	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2393.61	876.87
[show peptides]	147	59	2.3	1	<0.01	52.0	32.7	78	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	59	2.5	1	<0.01	49.1	32.7	78	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	59	2.5	1	<0.01	48.5	32.7	78	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2393.61	876.87
[show peptides]	147	56	4.3	1	<0.01	34.9	32.7	78	0.100	AT4G39460.1	SAMC1, SAMT1, S-adenosylmethionine carrier 1 (Gene model 1)	other transporters	III) transport	plastid	2393.61	876.87
[show peptides]	147	56	4.3	1	<0.01	34.9	32.7	78	0.100	AT4G39460.2	SAMC1, SAMT1, S-adenosylmethionine carrier 1 (Gene model 2)	other transporters	III) transport	plastid	2393.61	876.87
[show peptides]	147	48	3.0	1	<0.05	28.2	32.7	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2393.61	876.87
[show peptides]	147	34	4.1	1	<0.05	30.1	32.7	78	-0.092	AT2G45990.1	AT2G45990.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.61	876.87
[show peptides]	147	34	2.8	1	<0.05	53.9	32.7	78	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2393.61	876.87
[show peptides]	147	34	4.1	1	<0.05	30.1	32.7	78	-0.092	AT2G45990.2	AT2G45990.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.61	876.87
[show peptides]	147	34	4.2	1	<0.05	29.5	32.7	78	-0.078	AT2G45990.3	AT2G45990.3	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.61	876.87
[show peptides]	147	34	5.2	1	<0.05	23.4	32.7	78	0.007	AT2G45990.4	AT2G45990.4	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.61	876.87
[show peptides]	148	745	35.8	11	<0.01	37.9	33.4	160	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2023.64	857.72
[show peptides]	148	327	18.9	8	<0.01	53.9	33.4	160	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	310	19.2	5	<0.01	36.7	33.4	160	0.220	AT5G54770.1	THI1, TZ, THI4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2023.64	857.72
[show peptides]	148	238	23.6	5	<0.01	30.2	33.4	160	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	231	20.8	5	<0.01	35.1	33.4	160	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	226	11.7	4	<0.01	44.6	33.4	160	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 1)	other transporters	III) transport	plastid	2023.64	857.72
[show peptides]	148	226	12.0	4	<0.01	43.5	33.4	160	0.496	AT5G46110.3	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 3)	other transporters	III) transport	plastid	2023.64	857.72
[show peptides]	148	226	11.6	4	<0.01	45.2	33.4	160	0.543	AT5G46110.4	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 4)	other transporters	III) transport	plastid	2023.64	857.72
[show peptides]	148	208	11.4	3	<0.01	31.1	33.4	160	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	163	11.2	4	<0.01	28.2	33.4	160	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	151	11.6	4	<0.01	35.4	33.4	160	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	123	12.9	3	<0.01	31.2	33.4	160	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	113	10.9	3	<0.01	33.8	33.4	160	-0.055	AT4G25080.1	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2023.64	857.72
[show peptides]	148	113	10.9	3	<0.01	33.8	33.4	160	-0.055	AT4G25080.2	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2023.64	857.72
[show peptides]	148	113	10.9	3	<0.01	33.8	33.4	160	-0.055	AT4G25080.3	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 3)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2023.64	857.72
[show peptides]	148	113	13.9	3	<0.01	27.1	33.4	160	-0.223	AT4G25080.4	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 4)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2023.64	857.72
[show peptides]	148	113	10.9	3	<0.01	33.8	33.4	160	-0.055	AT4G25080.5	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 5)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2023.64	857.72
[show peptides]	148	76	6.2	2	<0.01	39.5	33.4	160	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	148	56	3.1	1	<0.01	38.9	33.4	160	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2023.64	857.72
[show peptides]	149	798	50.6	15	<0.01	35.1	32.5	32	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	728	49.8	14	<0.01	35.0	32.5	32	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	580	32.1	9	<0.01	37.9	32.5	32	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2704.82	880.01
[show peptides]	149	520	46.4	10	<0.01	30.2	32.5	32	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	468	31.4	8	<0.01	31.2	32.5	32	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	432	26.2	6	<0.01	31.1	32.5	32	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	254	19.3	6	<0.01	35.8	32.5	32	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2704.82	880.01
[show peptides]	149	250	11.7	4	<0.01	44.6	32.5	32	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 1)	other transporters	III) transport	plastid	2704.82	880.01
[show peptides]	149	250	12.0	4	<0.01	43.5	32.5	32	0.496	AT5G46110.3	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 3)	other transporters	III) transport	plastid	2704.82	880.01
[show peptides]	149	250	11.6	4	<0.01	45.2	32.5	32	0.543	AT5G46110.4	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 4)	other transporters	III) transport	plastid	2704.82	880.01
[show peptides]	149	223	14.2	4	<0.01	35.0	32.5	32	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2704.82	880.01
[show peptides]	149	102	5.9	2	<0.01	43.6	32.5	32	0.641	AT2G26900.1	Sodium Bile acid symporter family	other transporters	III) transport	plastid	2704.82	880.01
[show peptides]	149	77	6.7	2	<0.01	28.2	32.5	32	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	64	3.4	1	<0.01	35.7	32.5	32	-0.022	AT4G22890.1	PGR5-LIKE A (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	64	3.4	1	<0.01	35.7	32.5	32	-0.022	AT4G22890.2	PGR5-LIKE A (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	64	3.4	1	<0.01	35.7	32.5	32	-0.022	AT4G22890.3	PGR5-LIKE A (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	64	3.4	1	<0.01	35.5	32.5	32	-0.029	AT4G22890.4	PGR5-LIKE A (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	64	3.4	1	<0.01	35.6	32.5	32	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2704.82	880.01
[show peptides]	149	48	2.8	1	<0.01	27.8	32.5	32	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2704.82	880.01
[show peptides]	150	314	11.6	5	<0.01	39.5	32.9	500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1194.33	871.40
[show peptides]	150	272	11.0	5	<0.01	38.9	32.9	500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1194.33	871.40
[show peptides]	151	339	15.9	5	<0.01	39.5	33.1	1500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	419.62	866.03
[show peptides]	151	207	12.1	3	<0.01	36.4	33.1	1500	-0.561	AT1G65260.1	pTAC4, VIPP1, plastid transcriptionally active 4	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62	866.03
[show peptides]	151	140	11.6	3	<0.01	38.9	33.1	1500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	419.62	866.03
[show peptides]	152	316	11.6	5	<0.01	39.5	32.6	1150	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	616.06	877.22
[show peptides]	152	311	14.2	5	<0.01	38.9	32.6	1150	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	616.06	877.22
[show peptides]	153	338	17.6	5	<0.01	36.4	32.9	1700	-0.561	AT1G65260.1	pTAC4, VIPP1, plastid transcriptionally active 4	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.56	869.83
[show peptides]	153	275	11.6	5	<0.01	39.5	32.9	1700	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	303.56	869.83
[show peptides]	153	175	13.5	3	<0.01	32.6	32.9	1700	-0.244	AT2G33800.1	Rps5, Ribosomal protein S5 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.56	869.83
[show peptides]	153	37	2.2	1	<0.01	40.0	32.9	1700	0.737	ATCG01100.1	NdhA	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	869.83
[show peptides]	154	490	24.4	10	<0.01	35.1	32.9	93	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2314.67	870.92
[show peptides]	154	402	23.4	7	<0.01	35.4	32.9	93	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	2314.67	870.92
[show peptides]	154	363	18.4	7	<0.01	35.0	32.9	93	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2314.67	870.92
[show peptides]	154	341	13.5	6	<0.01	37.9	32.9	93	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2314.67	870.92
[show peptides]	154	209	12.0	4	<0.01	44.6	32.9	93	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 1)	other transporters	III) transport	plastid	2314.67	870.92
[show peptides]	154	209	12.3	4	<0.01	43.5	32.9	93	0.496	AT5G46110.3	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 3)	other transporters	III) transport	plastid	2314.67	870.92
[show peptides]	154	209	11.8	4	<0.01	45.2	32.9	93	0.543	AT5G46110.4	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related (Gene model 4)	other transporters	III) transport	plastid	2314.67	870.92
[show peptides]	154	153	11.0	4	<0.01	47.7	32.9	93	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2314.67	870.92
[show peptides]	154	142	7.1	2	<0.01	33.8	32.9	93	-0.055	AT4G25080.1	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2314.67	870.92
[show peptides]	154	142	7.1	2	<0.01	33.8	32.9	93	-0.055	AT4G25080.2	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2314.67	870.92
[show peptides]	154	142	7.1	2	<0.01	33.8	32.9	93	-0.055	AT4G25080.3	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 3)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2314.67	870.92
[show peptides]	154	142	9.0	2	<0.01	27.1	32.9	93	-0.223	AT4G25080.4	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 4)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2314.67	870.92
[show peptides]	154	142	7.1	2	<0.01	33.8	32.9	93	-0.055	AT4G25080.5	CHLM, magnesium-protoporphyrin IX methyltransferase (Gene model 5)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2314.67	870.92
[show peptides]	154	134	9.8	3	<0.01	42.8	32.9	93	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2314.67	870.92
[show peptides]	154	134	12.3	3	<0.01	34.3	32.9	93	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2314.67	870.92
[show peptides]	154	134	11.1	3	<0.01	37.7	32.9	93	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2314.67	870.92
[show peptides]	154	134	11.1	3	<0.01	37.7	32.9	93	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2314.67	870.92
[show peptides]	154	102	3.5	2	<0.01	47.6	32.9	93	0.757	AT5G52540.1	Protein of unknown function (DUF819)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2314.67	870.92
[show peptides]	154	40	3.2	1	<0.05	34.9	32.9	93	-0.555	AT5G24490.1	30S ribosomal protein, putative	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2314.67	870.92
[show peptides]	154	39	3.0	1	<0.05	28.2	32.9	93	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2314.67	870.92
[show peptides]	155	485	19.5	9	<0.01	38.9	30.8	500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1194.33	926.21
[show peptides]	155	102	4.2	2	<0.01	39.5	30.8	500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1194.33	926.21
[show peptides]	156	85	3.1	1	<0.01	38.9	31.0	210	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1820.61	920.03
[show peptides]	157	894	51.4	14	<0.01	30.2	27.8	120	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2194.55	1012.83
[show peptides]	157	829	44.6	10	<0.01	28.2	27.8	120	0.021	AT1G29930.1	Lhcb1.3, CAB1, AB140, CAB140	b) photosystem II	I) photophosphorylation	plastid	2194.55	1012.83
[show peptides]	157	681	46.6	9	<0.01	28.2	27.8	120	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2194.55	1012.83
[show peptides]	157	552	34.0	7	<0.01	28.6	27.8	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2194.55	1012.83
[show peptides]	157	345	33.3	8	<0.01	29.5	27.8	120	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2194.55	1012.83
[show peptides]	157	345	25.9	8	<0.01	37.5	27.8	120	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2194.55	1012.83
[show peptides]	157	345	26.8	8	<0.01	36.1	27.8	120	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2194.55	1012.83
[show peptides]	157	140	12.5	3	<0.01	28.7	27.8	120	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2194.55	1012.83
[show peptides]	157	107	8.5	2	<0.01	43.0	27.8	120	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2194.55	1012.83
[show peptides]	157	94	6.8	2	<0.01	42.9	27.8	120	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2194.55	1012.83
[show peptides]	157	42	0.9	1	<0.01	95.5	27.8	120	-0.824	AT2G43160.1	ENTH/VHS family protein (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	cytosol	2194.55	1012.83
[show peptides]	157	42	0.9	1	<0.01	95.5	27.8	120	-0.824	AT2G43160.2	ENTH/VHS family protein (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	cytosol	2194.55	1012.83
[show peptides]	157	42	0.9	1	<0.01	95.5	27.8	120	-0.824	AT2G43160.3	ENTH/VHS family protein (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	cytosol	2194.55	1012.83
[show peptides]	157	42	1.2	1	<0.01	69.5	27.8	120	-0.854	AT2G43160.4	ENTH/VHS family protein (Gene model 4)	amino acid metabolism	VI) other metabolic pathways	cytosol	2194.55	1012.83
[show peptides]	157	40	1.6	1	<0.01	50.7	27.8	120	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	2194.55	1012.83
[show peptides]	158	713	28.0	11	<0.01	38.9	31.0	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1669.29	920.52
[show peptides]	158	401	25.9	7	<0.01	35.4	31.0	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.29	920.52
[show peptides]	158	318	14.2	5	<0.01	39.5	31.0	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.29	920.52
[show peptides]	158	60	4.5	1	<0.01	28.2	31.0	260	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1669.29	920.52
[show peptides]	158	33	8.8	1	<0.05	17.4	31.0	260	0.552	ATCG00730.1	PetD, subunit IV	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.29	920.52
[show peptides]	159	607	22.7	10	<0.01	38.9	30.8	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	162	7.9	3	<0.01	39.5	30.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	101	7.3	2	<0.01	29.2	30.8	560	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	101	9.2	2	<0.01	23.7	30.8	560	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	101	7.3	2	<0.01	29.2	30.8	560	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	62	3.4	1	<0.01	51.9	30.8	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	52	4.8	1	<0.01	27.7	30.8	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	51	5.0	1	<0.01	24.2	30.8	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	37	4.1	1	<0.01	26.0	30.8	560	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	37	4.8	1	<0.01	22.1	30.8	560	0.186	AT3G54890.2	Lhca1 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	37	6.1	1	<0.01	17.5	30.8	560	0.021	AT3G54890.3	Lhca1 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	159	37	4.7	1	<0.01	23.3	30.8	560	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	1106.40	924.15
[show peptides]	160	1117	58.2	15	<0.01	30.2	29.8	31	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2709.99	953.28
[show peptides]	160	692	27.2	10	<0.01	31.2	29.8	31	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2709.99	953.28
[show peptides]	160	481	20.0	6	<0.01	31.1	29.8	31	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2709.99	953.28
[show peptides]	160	217	11.2	4	<0.01	28.2	29.8	31	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2709.99	953.28
[show peptides]	160	188	14.9	4	<0.01	30.2	29.8	31	-0.097	AT2G40100.1	Lhcb4.3, CP29	b) photosystem II	I) photophosphorylation	plastid	2709.99	953.28
[show peptides]	160	180	12.3	4	<0.01	28.2	29.8	31	-0.602	AT5G52440.1	HCF106, Bacterial sec-independent translocation protein mttA/Hcf106	protein transporters	III) transport	plastid	2709.99	953.28
[show peptides]	160	159	9.7	3	<0.01	33.8	29.8	31	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	2709.99	953.28
[show peptides]	160	52	3.9	1	<0.01	30.5	29.8	31	-0.194	AT3G23400.1	FIB4, Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2709.99	953.28
[show peptides]	161	585	22.7	10	<0.01	38.9	30.7	1000	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	161	301	19.6	7	<0.01	35.1	30.7	1000	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	161	291	12.0	5	<0.01	28.2	30.7	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	161	214	15.4	5	<0.01	35.0	30.7	1000	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	161	211	10.8	4	<0.01	39.5	30.7	1000	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	161	187	12.1	4	<0.01	28.6	30.7	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	161	142	9.3	3	<0.01	31.1	30.7	1000	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	161	83	6.6	2	<0.01	31.2	30.7	1000	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	725.81	928.05
[show peptides]	162	552	22.7	10	<0.01	38.9	30.5	1150	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	616.06	932.31
[show peptides]	162	255	12.0	5	<0.01	28.2	30.5	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.06	932.31
[show peptides]	162	226	15.4	5	<0.01	35.1	30.5	1150	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	616.06	932.31
[show peptides]	162	188	12.1	4	<0.01	28.6	30.5	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.06	932.31
[show peptides]	163	551	22.7	10	<0.01	38.9	30.7	830	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	265	18.4	6	<0.01	35.1	30.7	830	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	208	12.0	4	<0.01	28.2	30.7	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	196	15.4	5	<0.01	35.0	30.7	830	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	136	12.1	3	<0.01	28.6	30.7	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	88	4.2	2	<0.01	39.5	30.7	830	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	81	5.9	2	<0.01	31.1	30.7	830	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	42	4.4	1	<0.01	25.0	30.7	830	0.024	AT3G08940.1	Lhcb4.2, CP29 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	163	42	3.5	1	<0.01	31.2	30.7	830	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	829.77	928.71
[show peptides]	164	344	14.2	6	<0.01	38.9	30.5	700	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	951.79	933.26
[show peptides]	164	33	3.1	1	<0.05	31.3	30.5	700	-0.008	AT1G16880.1	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	951.79	933.26
[show peptides]	164	33	1.8	1	<0.05	44.1	30.5	700	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	951.79	933.26
[show peptides]	165	696	34.8	10	<0.01	31.2	29.9	78	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2392.13	949.20
[show peptides]	165	665	41.7	13	<0.01	33.8	29.9	78	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	2392.13	949.20
[show peptides]	165	610	29.7	8	<0.01	31.1	29.9	78	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2392.13	949.20
[show peptides]	165	363	24.3	7	<0.01	30.2	29.9	78	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2392.13	949.20
[show peptides]	165	230	17.0	4	<0.01	29.7	29.9	78	-0.471	AT3G25920.1	Rpl15, Ribosomal protein L15	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2392.13	949.20
[show peptides]	165	194	22.8	4	<0.01	27.7	29.9	78	-0.758	AT4G23890.1	AT4G23890.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2392.13	949.20
[show peptides]	165	185	12.5	4	<0.01	42.8	29.9	78	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2392.13	949.20
[show peptides]	165	185	15.8	4	<0.01	34.3	29.9	78	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2392.13	949.20
[show peptides]	165	185	14.3	4	<0.01	37.7	29.9	78	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2392.13	949.20
[show peptides]	165	185	14.3	4	<0.01	37.7	29.9	78	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2392.13	949.20
[show peptides]	165	171	14.1	3	<0.01	28.3	29.9	78	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2392.13	949.20
[show peptides]	165	140	9.1	3	<0.01	33.6	29.9	78	0.210	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein (AT1G24360.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	135	10.1	2	<0.01	26.5	29.9	78	-0.268	AT1G18170.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein (AT1G18170.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	114	6.4	2	<0.01	33.4	29.9	78	-0.430	AT5G11450.1	Mog1, PsbP family protein (AT5G11450.1)	b) photosystem II	I) photophosphorylation	plastid	2392.13	949.20
[show peptides]	165	113	5.7	2	<0.01	34.4	29.9	78	-0.209	AT1G74070.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT1G74070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	113	8.9	2	<0.01	29.4	29.9	78	-0.169	AT2G43030.1	Rpl3, Ribosomal protein L3 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2392.13	949.20
[show peptides]	165	111	14.6	3	<0.01	27.6	29.9	78	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2392.13	949.20
[show peptides]	165	106	9.5	3	<0.01	30.5	29.9	78	-0.194	AT3G23400.1	FIB4, Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	102	7.1	2	<0.01	33.9	29.9	78	-0.313	AT1G66670.1	Clp-P3, ClpP3, NClpP3, Clp protease proteolytic subunit 3	proteases	V) protein folding & processing	plastid	2392.13	949.20
[show peptides]	165	67	12.2	2	<0.01	29.5	29.9	78	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	67	9.5	2	<0.01	37.5	29.9	78	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	67	9.8	2	<0.01	36.1	29.9	78	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	66	8.5	2	<0.01	28.6	29.9	78	-0.526	AT4G25130.1	PMSR4, peptide met sulfoxide reductase 4	antioxidants	VI) other metabolic pathways	plastid	2392.13	949.20
[show peptides]	165	42	6.4	1	<0.01	24.4	29.9	78	-0.193	AT5G07020.1	Proline-rich family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13	949.20
[show peptides]	165	42	4.3	1	<0.01	28.6	29.9	78	-0.251	AT5G47110.1	LIL3:2, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2392.13	949.20
[show peptides]	165	40	3.1	1	<0.01	32.7	29.9	78	-0.324	AT1G65230.1	AT1G65230.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2392.13	949.20
[show peptides]	165	40	2.3	1	<0.01	52.0	29.9	78	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2392.13	949.20
[show peptides]	165	40	2.5	1	<0.01	49.1	29.9	78	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2392.13	949.20
[show peptides]	165	40	2.5	1	<0.01	48.5	29.9	78	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2392.13	949.20
[show peptides]	165	39	3.0	1	<0.01	28.2	29.9	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2392.13	949.20
[show peptides]	166	768	38.4	11	<0.01	33.3	30.4	19	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2851.11	937.40
[show peptides]	166	549	41.8	9	<0.01	30.2	30.4	19	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	494	27.9	11	<0.01	31.8	30.4	19	-0.534	AT5G44650.1	CEST, AtCEST, Encodes a chloroplast protein that induces tolerance to multiple environmental stress	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11	937.40
[show peptides]	166	352	21.6	6	<0.01	31.2	30.4	19	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	318	16.6	4	<0.01	31.1	30.4	19	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	288	19.1	4	<0.01	24.4	30.4	19	-0.193	AT5G07020.1	Proline-rich family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11	937.40
[show peptides]	166	286	26.5	7	<0.01	35.1	30.4	19	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	251	23.0	6	<0.01	35.0	30.4	19	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	244	10.8	4	<0.01	35.7	30.4	19	-0.022	AT4G22890.1	PGR5-LIKE A (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	244	10.8	4	<0.01	35.7	30.4	19	-0.022	AT4G22890.2	PGR5-LIKE A (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	244	10.8	4	<0.01	35.7	30.4	19	-0.022	AT4G22890.3	PGR5-LIKE A (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	244	10.9	4	<0.01	35.5	30.4	19	-0.029	AT4G22890.4	PGR5-LIKE A (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	244	10.9	4	<0.01	35.6	30.4	19	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	227	15.6	4	<0.01	30.6	30.4	19	-0.396	AT1G07320.1	Rpl4, Ribosomal protein L4 (Gene model 1)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2851.11	937.40
[show peptides]	166	227	15.7	4	<0.01	30.4	30.4	19	-0.394	AT1G07320.2	Rpl4, Ribosomal protein L4 (Gene model 2)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2851.11	937.40
[show peptides]	166	227	15.8	4	<0.01	30.1	30.4	19	-0.380	AT1G07320.3	Rpl4, Ribosomal protein L4 (Gene model 3)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2851.11	937.40
[show peptides]	166	170	11.6	3	<0.01	30.5	30.4	19	-0.194	AT3G23400.1	FIB4, Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11	937.40
[show peptides]	166	141	12.4	3	<0.01	28.6	30.4	19	-0.251	AT5G47110.1	LIL3:2, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	80	4.5	1	<0.01	26.5	30.4	19	-0.268	AT1G18170.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein (AT1G18170.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11	937.40
[show peptides]	166	57	3.6	1	<0.01	33.4	30.4	19	-0.102	AT5G37360.1	AT5G37360.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2851.11	937.40
[show peptides]	166	55	1.8	2	<0.01	79.2	30.4	19	-0.795	AT5G62170.1	AT5G62170.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	2851.11	937.40
[show peptides]	166	41	3.9	1	<0.01	27.5	30.4	19	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2851.11	937.40
[show peptides]	166	37	3.3	1	<0.01	33.7	30.4	19	-0.263	AT1G76080.1	ATCDSP32, CDSP32, chloroplastic drought-induced stress protein of 32 kD	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11	937.40
[show peptides]	166	33	2.4	1	<0.05	32.6	30.4	19	-0.317	AT3G24590.1	PLSP1, plastidic type I signal peptidase 1	proteases	V) protein folding & processing	plastid	2851.11	937.40
[show peptides]	167	138	8.2	3	<0.01	38.9	30.5	1700	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	303.56	932.43
[show peptides]	167	37	2.2	1	<0.05	40.0	30.5	1700	0.737	ATCG01100.1	NdhA	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	932.43
[show peptides]	168	441	19.5	7	<0.01	38.9	30.5	1500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	419.62	934.34
[show peptides]	168	164	10.8	4	<0.01	39.5	30.5	1500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	419.62	934.34
[show peptides]	168	104	7.1	2	<0.01	29.6	30.5	1500	-0.285	AT5G16390.1	CAC1, CAC1A, BCCP, BCCP1, chloroplastic acetylcoenzyme A carboxylase 1 (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62	934.34
[show peptides]	168	104	7.9	2	<0.01	26.9	30.5	1500	-0.307	AT5G16390.2	CAC1, CAC1A, BCCP, BCCP1, chloroplastic acetylcoenzyme A carboxylase 1 (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62	934.34
[show peptides]	168	96	9.0	3	<0.01	28.2	30.5	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62	934.34
[show peptides]	168	41	2.2	1	<0.01	40.0	30.5	1500	0.737	ATCG01100.1	NdhA	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	934.34
[show peptides]	169	442	23.4	7	<0.01	31.1	29.2	180	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	1955.36	971.31
[show peptides]	169	281	21.0	6	<0.01	33.8	29.2	180	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	1955.36	971.31
[show peptides]	169	268	25.1	6	<0.01	31.2	29.2	180	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	1955.36	971.31
[show peptides]	169	261	12.0	5	<0.01	28.2	29.2	180	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1955.36	971.31
[show peptides]	169	166	12.1	4	<0.01	28.6	29.2	180	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	1955.36	971.31
[show peptides]	169	83	4.6	1	<0.01	28.3	29.2	180	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1955.36	971.31
[show peptides]	169	80	7.5	2	<0.01	30.2	29.2	180	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	1955.36	971.31
[show peptides]	169	46	4.2	1	<0.05	33.9	29.2	180	-0.313	AT1G66670.1	Clp-P3, ClpP3, NClpP3, Clp protease proteolytic subunit 3	proteases	V) protein folding & processing	plastid	1955.36	971.31
[show peptides]	169	46	1.8	1	<0.01	45.0	29.2	180	-1.474	AT1G07350.1	RNA-binding (RRM/RBD/RNP motifs) family protein (AT1G07350.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	1955.36	971.31
[show peptides]	169	37	4.1	1	<0.05	42.6	29.2	180	-0.441	AT1G49970.1	Clp-R1, ClpR1, NClpP5, SVR2, Clp protease proteolytic subunit 1	proteases	V) protein folding & processing	plastid	1955.36	971.31
[show peptides]	169	36	5.6	1	<0.05	29.5	29.2	180	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1955.36	971.31
[show peptides]	169	36	4.3	1	<0.05	37.5	29.2	180	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1955.36	971.31
[show peptides]	169	36	4.5	1	<0.05	36.1	29.2	180	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1955.36	971.31
[show peptides]	170	872	45.6	13	<0.01	31.2	29.0	220	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	710	38.3	10	<0.01	31.1	29.0	220	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	309	12.0	5	<0.01	28.2	29.0	220	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	252	17.7	4	<0.01	33.8	29.0	220	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	244	13.2	4	<0.01	28.2	29.0	220	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	201	11.9	4	<0.01	38.9	29.0	220	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	147	8.7	3	<0.01	28.7	29.0	220	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	126	8.4	2	<0.01	28.3	29.0	220	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1815.98	977.68
[show peptides]	170	113	10.7	3	<0.01	30.2	29.0	220	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	68	5.4	1	<0.01	29.7	29.0	220	-0.471	AT3G25920.1	Rpl15, Ribosomal protein L15	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1815.98	977.68
[show peptides]	170	61	7.0	2	<0.01	27.5	29.0	220	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1815.98	977.68
[show peptides]	170	44	4.2	1	<0.01	33.9	29.0	220	-0.313	AT1G66670.1	Clp-P3, ClpP3, NClpP3, Clp protease proteolytic subunit 3	proteases	V) protein folding & processing	plastid	1815.98	977.68
[show peptides]	170	36	1.6	1	<0.01	50.7	29.0	220	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	1815.98	977.68
[show peptides]	170	33	4.1	1	<0.05	42.6	29.0	220	-0.441	AT1G49970.1	Clp-R1, ClpR1, NClpP5, SVR2, Clp protease proteolytic subunit 1	proteases	V) protein folding & processing	plastid	1815.98	977.68
[show peptides]	171	403	23.4	7	<0.01	31.1	28.5	1000	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	725.81	990.43
[show peptides]	171	371	28.6	8	<0.01	31.2	28.5	1000	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	725.81	990.43
[show peptides]	171	300	12.0	5	<0.01	28.2	28.5	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.81	990.43
[show peptides]	171	235	12.1	4	<0.01	28.6	28.5	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.81	990.43
[show peptides]	172	507	31.4	8	<0.01	31.2	28.6	830	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	829.77	989.94
[show peptides]	172	458	26.2	6	<0.01	31.1	28.6	830	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	829.77	989.94
[show peptides]	172	203	11.2	4	<0.01	28.2	28.6	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.77	989.94
[show peptides]	173	417	23.4	7	<0.01	31.1	28.4	1150	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	616.06	993.49
[show peptides]	173	387	28.6	8	<0.01	31.2	28.4	1150	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	616.06	993.49
[show peptides]	173	279	12.0	5	<0.01	28.2	28.4	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.06	993.49
[show peptides]	173	279	12.1	5	<0.01	28.1	28.4	1150	-0.006	AT2G34420.1	Lhcb1.5	b) photosystem II	I) photophosphorylation	plastid	616.06	993.49
[show peptides]	173	204	12.1	4	<0.01	28.6	28.4	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.06	993.49
[show peptides]	173	99	11.1	3	<0.01	30.2	28.4	1150	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	616.06	993.49
[show peptides]	174	236	13.8	5	<0.01	31.1	28.4	1500	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	419.62	993.53
[show peptides]	174	175	12.0	4	<0.01	28.2	28.4	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62	993.53
[show peptides]	174	120	10.1	3	<0.01	31.2	28.4	1500	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	419.62	993.53
[show peptides]	175	773	43.6	12	<0.01	30.2	28.1	75	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2411.09	1005.15
[show peptides]	175	646	44.1	16	<0.01	37.5	28.1	75	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2411.09	1005.15
[show peptides]	175	294	19.9	5	<0.01	29.4	28.1	75	-0.169	AT2G43030.1	Rpl3, Ribosomal protein L3 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.09	1005.15
[show peptides]	175	238	24.1	6	<0.01	27.6	28.1	75	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2411.09	1005.15
[show peptides]	175	173	11.9	4	<0.01	42.5	28.1	75	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2411.09	1005.15
[show peptides]	175	127	12.3	3	<0.01	34.3	28.1	75	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2411.09	1005.15
[show peptides]	175	127	11.1	3	<0.01	37.7	28.1	75	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2411.09	1005.15
[show peptides]	175	127	11.1	3	<0.01	37.7	28.1	75	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2411.09	1005.15
[show peptides]	175	110	8.4	2	<0.01	28.3	28.1	75	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.09	1005.15
[show peptides]	175	109	8.5	2	<0.01	32.9	28.1	75	-0.073	AT1G08640.1	CJD1, Chloroplast J-like domain 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2411.09	1005.15
[show peptides]	175	80	4.1	1	<0.01	31.5	28.1	75	-0.043	AT5G45390.1	Clp-P4, ClpP4, NClpP4, Clp protease P4	proteases	V) protein folding & processing	plastid	2411.09	1005.15
[show peptides]	175	76	3.8	2	<0.01	52.0	28.1	75	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2411.09	1005.15
[show peptides]	175	76	4.0	2	<0.01	49.1	28.1	75	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2411.09	1005.15
[show peptides]	175	76	4.1	2	<0.01	48.5	28.1	75	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2411.09	1005.15
[show peptides]	175	67	6.7	2	<0.01	28.2	28.1	75	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2411.09	1005.15
[show peptides]	175	50	2.5	1	<0.01	30.4	28.1	75	-0.390	AT3G63190.1	RRF, HFP108, cpRRF, AtcpRRF, ribosome recycling factor, chloroplast precursor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2411.09	1005.15
[show peptides]	175	49	3.7	1	<0.01	30.6	28.1	75	-0.300	AT5G14660.1	PDF1B, DEF2, ATDEF2, peptide deformylase 1B (Gene model 1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2411.09	1005.15
[show peptides]	175	49	3.7	1	<0.01	30.6	28.1	75	-0.300	AT5G14660.2	PDF1B, DEF2, ATDEF2, peptide deformylase 1B (Gene model 2)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2411.09	1005.15
[show peptides]	175	35	2.9	1	<0.01	29.2	28.1	75	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2411.09	1005.15
[show peptides]	175	35	3.7	1	<0.05	23.7	28.1	75	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2411.09	1005.15
[show peptides]	175	35	2.9	1	<0.05	29.2	28.1	75	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	2411.09	1005.15
[show peptides]	176	1467	62.1	20	<0.01	30.2	28.1	30	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2716.04	1003.29
[show peptides]	176	285	25.1	5	<0.01	28.2	28.1	30	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2716.04	1003.29
[show peptides]	176	216	14.8	4	<0.01	31.1	28.1	30	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2716.04	1003.29
[show peptides]	176	210	12.1	4	<0.01	28.6	28.1	30	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2716.04	1003.29
[show peptides]	176	206	33.3	5	<0.01	30.2	28.1	30	-0.097	AT2G40100.1	Lhcb4.3, CP29	b) photosystem II	I) photophosphorylation	plastid	2716.04	1003.29
[show peptides]	177	223	12.0	4	<0.01	28.2	28.2	1700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	303.56	1001.76
[show peptides]	177	203	12.8	4	<0.01	31.1	28.2	1700	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	303.56	1001.76
[show peptides]	177	170	17.4	5	<0.01	31.2	28.2	1700	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	303.56	1001.76
[show peptides]	178	521	22.3	9	<0.01	51.6	25.9	170	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1984.69	1075.22
[show peptides]	178	447	17.9	8	<0.01	52.0	25.9	170	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1984.69	1075.22
[show peptides]	178	447	19.1	8	<0.01	49.1	25.9	170	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1984.69	1075.22
[show peptides]	178	447	19.3	8	<0.01	48.5	25.9	170	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1984.69	1075.22
[show peptides]	178	185	17.1	4	<0.01	27.5	25.9	170	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1984.69	1075.22
[show peptides]	178	70	2.6	1	<0.01	56.0	25.9	170	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1984.69	1075.22
[show peptides]	178	44	1.9	1	<0.01	57.4	25.9	170	-0.328	AT4G37930.1	SHM1, STM, SHMT1, serine transhydroxymethyltransferase 1	amino acid metabolism	VI) other metabolic pathways	mitochondrion	1984.69	1075.22
[show peptides]	179	1093	48.9	14	<0.01	30.2	27.1	12	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2977.14	1036.66
[show peptides]	179	366	27.5	6	<0.01	29.3	27.1	12	0.116	AT3G04790.1	Ribose 5-phosphate isomerase, type A protein	calvin cycle	II) carbon fixation	plastid	2977.14	1036.66
[show peptides]	179	255	27.8	6	<0.01	29.5	27.1	12	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2977.14	1036.66
[show peptides]	179	255	21.6	6	<0.01	37.5	27.1	12	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2977.14	1036.66
[show peptides]	179	255	22.3	6	<0.01	36.1	27.1	12	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2977.14	1036.66
[show peptides]	179	243	23.3	5	<0.01	31.7	27.1	12	-0.226	AT1G71500.1	Rieske (2Fe-2S) domain-containing protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2977.14	1036.66
[show peptides]	179	193	13.6	3	<0.01	29.2	27.1	12	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2977.14	1036.66
[show peptides]	179	193	17.0	3	<0.01	23.7	27.1	12	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2977.14	1036.66
[show peptides]	179	193	13.6	3	<0.01	29.2	27.1	12	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	2977.14	1036.66
[show peptides]	179	148	10.2	3	<0.01	35.1	27.1	12	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2977.14	1036.66
[show peptides]	179	122	8.2	3	<0.01	28.2	27.1	12	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2977.14	1036.66
[show peptides]	179	59	6.5	2	<0.01	31.5	27.1	12	-0.043	AT5G45390.1	Clp-P4, ClpP4, NClpP4, Clp protease P4	proteases	V) protein folding & processing	plastid	2977.14	1036.66
[show peptides]	179	50	2.8	2	<0.01	59.4	27.1	12	-1.449	AT5G63550.1	DEK domain-containing chromatin associated protein (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	2977.14	1036.66
[show peptides]	179	50	2.8	2	<0.01	59.6	27.1	12	-1.453	AT5G63550.2	DEK domain-containing chromatin associated protein (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	2977.14	1036.66
[show peptides]	179	41	4.1	1	<0.01	32.9	27.1	12	-0.073	AT1G08640.1	CJD1, Chloroplast J-like domain 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2977.14	1036.66
[show peptides]	180	124	7.9	2	<0.01	31.1	26.4	210	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	1815.98	1057.95
[show peptides]	180	48	4.9	1	<0.01	31.2	26.4	210	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	1815.98	1057.95
[show peptides]	181	442	23.6	7	<0.01	30.2	26.7	1000	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	725.81	1049.53
[show peptides]	181	307	12.0	5	<0.01	28.2	26.7	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.81	1049.53
[show peptides]	181	219	12.1	4	<0.01	28.6	26.7	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.81	1049.53
[show peptides]	181	196	13.2	4	<0.01	28.2	26.7	1000	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	725.81	1049.53
[show peptides]	181	35	2.9	1	<0.05	29.2	26.7	1000	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	725.81	1049.53
[show peptides]	181	35	3.7	1	<0.05	23.7	26.7	1000	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	725.81	1049.53
[show peptides]	181	35	2.9	1	<0.05	29.2	26.7	1000	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	725.81	1049.53
[show peptides]	182	372	22.9	6	<0.01	30.2	26.6	1150	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	616.06	1050.40
[show peptides]	182	284	12.0	5	<0.01	28.2	26.6	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.06	1050.40
[show peptides]	182	206	12.1	4	<0.01	28.6	26.6	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.06	1050.40
[show peptides]	182	177	13.2	4	<0.01	28.2	26.6	1150	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	616.06	1050.40
[show peptides]	183	348	23.6	6	<0.01	30.2	26.7	830	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	829.77	1047.69
[show peptides]	183	159	11.2	3	<0.01	28.2	26.7	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.77	1047.69
[show peptides]	183	127	12.1	3	<0.01	28.6	26.7	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.77	1047.69
[show peptides]	183	81	7.0	2	<0.01	29.2	26.7	830	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	829.77	1047.69
[show peptides]	183	81	8.7	2	<0.01	23.7	26.7	830	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	829.77	1047.69
[show peptides]	183	81	7.0	2	<0.01	29.2	26.7	830	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	829.77	1047.69
[show peptides]	184	272	17.9	5	<0.01	30.2	26.7	1500	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	419.62	1049.00
[show peptides]	184	222	12.0	4	<0.01	28.2	26.7	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62	1049.00
[show peptides]	184	104	14.7	3	<0.01	25.4	26.7	1500	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1049.00
[show peptides]	184	48	2.9	1	<0.01	29.2	26.7	1500	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	419.62	1049.00
[show peptides]	184	48	3.7	1	<0.01	23.7	26.7	1500	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	419.62	1049.00
[show peptides]	184	48	2.9	1	<0.01	29.2	26.7	1500	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	419.62	1049.00
[show peptides]	185	570	42.3	7	<0.01	28.2	26.0	28	0.021	AT1G29930.1	Lhcb1.3, CAB1, AB140, CAB140	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	568	50.4	10	<0.01	30.2	26.0	28	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	533	61.7	12	<0.01	26.8	26.0	28	-0.083	AT5G20720.1	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20 (Gene model 1)	Cpn20	V) protein folding & processing	plastid	2741.69	1070.70
[show peptides]	185	533	61.7	12	<0.01	26.8	26.0	28	-0.083	AT5G20720.2	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20 (Gene model 2)	Cpn20	V) protein folding & processing	plastid	2741.69	1070.70
[show peptides]	185	533	61.7	12	<0.01	26.8	26.0	28	-0.083	AT5G20720.3	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20 (Gene model 3)	Cpn20	V) protein folding & processing	plastid	2741.69	1070.70
[show peptides]	185	530	42.6	7	<0.01	28.1	26.0	28	-0.006	AT2G34420.1	Lhcb1.5	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	518	44.4	7	<0.01	28.2	26.0	28	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	460	27.1	6	<0.01	29.2	26.0	28	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	460	33.9	6	<0.01	23.7	26.0	28	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	460	27.1	6	<0.01	29.2	26.0	28	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	372	32.5	6	<0.01	28.6	26.0	28	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	342	32.2	8	<0.01	29.5	26.0	28	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2741.69	1070.70
[show peptides]	185	342	25.1	8	<0.01	37.5	26.0	28	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2741.69	1070.70
[show peptides]	185	342	25.9	8	<0.01	36.1	26.0	28	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2741.69	1070.70
[show peptides]	185	263	22.1	5	<0.01	27.5	26.0	28	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	170	10.9	3	<0.01	28.0	26.0	28	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	136	6.8	2	<0.01	28.7	26.0	28	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	88	6.3	2	<0.01	27.8	26.0	28	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2741.69	1070.70
[show peptides]	185	76	4.5	1	<0.01	31.1	26.0	28	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2741.69	1070.70
[show peptides]	185	73	4.2	1	<0.01	31.4	26.0	28	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2741.69	1070.70
[show peptides]	185	73	2.8	1	<0.01	48.2	26.0	28	-0.315	AT5G38660.2	APE1, acclimation of photosynthesis to environment (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2741.69	1070.70
[show peptides]	185	49	1.5	1	<0.01	65.4	26.0	28	-0.315	AT3G22330.1	PMH2, ATRH53, putative mitochondrial RNA helicase 2	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	mitochondrion	2741.69	1070.70
[show peptides]	186	265	17.9	5	<0.01	30.2	26.6	1700	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	303.56	1051.48
[show peptides]	186	192	12.0	4	<0.01	28.2	26.6	1700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	303.56	1051.48
[show peptides]	186	107	14.7	3	<0.01	25.4	26.6	1700	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1051.48
[show peptides]	187	980	53.3	17	<0.01	29.5	26.0	76	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.12	1071.33
[show peptides]	187	980	41.5	17	<0.01	37.5	26.0	76	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.12	1071.33
[show peptides]	187	980	42.9	17	<0.01	36.1	26.0	76	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.12	1071.33
[show peptides]	187	639	58.1	11	<0.01	26.8	26.0	76	-0.083	AT5G20720.1	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20 (Gene model 1)	Cpn20	V) protein folding & processing	plastid	2405.12	1071.33
[show peptides]	187	639	58.1	11	<0.01	26.8	26.0	76	-0.083	AT5G20720.2	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20 (Gene model 2)	Cpn20	V) protein folding & processing	plastid	2405.12	1071.33
[show peptides]	187	639	58.1	11	<0.01	26.8	26.0	76	-0.083	AT5G20720.3	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20 (Gene model 3)	Cpn20	V) protein folding & processing	plastid	2405.12	1071.33
[show peptides]	187	381	26.1	7	<0.01	27.7	26.0	76	-0.258	AT3G52150.1	RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G52150.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2405.12	1071.33
[show peptides]	187	381	26.1	7	<0.01	27.7	26.0	76	-0.258	AT3G52150.2	RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G52150.2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2405.12	1071.33
[show peptides]	187	333	26.4	7	<0.01	28.5	26.0	76	-0.242	AT5G16710.1	DHAR3, dehydroascorbate reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.12	1071.33
[show peptides]	187	291	24.1	6	<0.01	27.6	26.0	76	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2405.12	1071.33
[show peptides]	187	288	12.0	5	<0.01	28.2	26.0	76	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	264	27.5	5	<0.01	29.2	26.0	76	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	264	34.4	5	<0.01	23.7	26.0	76	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	264	27.5	5	<0.01	29.2	26.0	76	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	231	31.3	6	<0.01	23.2	26.0	76	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2405.12	1071.33
[show peptides]	187	222	13.3	4	<0.01	42.8	26.0	76	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2405.12	1071.33
[show peptides]	187	222	16.7	4	<0.01	34.3	26.0	76	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2405.12	1071.33
[show peptides]	187	222	15.1	4	<0.01	37.7	26.0	76	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2405.12	1071.33
[show peptides]	187	222	15.1	4	<0.01	37.7	26.0	76	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2405.12	1071.33
[show peptides]	187	213	12.1	4	<0.01	28.6	26.0	76	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	203	17.1	4	<0.01	31.4	26.0	76	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.12	1071.33
[show peptides]	187	203	11.4	4	<0.01	48.2	26.0	76	-0.315	AT5G38660.2	APE1, acclimation of photosynthesis to environment (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.12	1071.33
[show peptides]	187	189	13.2	4	<0.01	28.2	26.0	76	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	181	17.0	4	<0.01	28.0	26.0	76	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	167	14.6	4	<0.01	27.8	26.0	76	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2405.12	1071.33
[show peptides]	187	160	14.9	4	<0.01	34.6	26.0	76	-0.311	AT3G14110.1	FLU, Tetratricopeptide repeat (TPR)-like superfamily protein (Gene model 1)	TPR proteins	VI) other metabolic pathways	plastid	2405.12	1071.33
[show peptides]	187	160	20.3	4	<0.01	25.7	26.0	76	-0.257	AT3G14110.2	FLU, Tetratricopeptide repeat (TPR)-like superfamily protein (Gene model 2)	TPR proteins	VI) other metabolic pathways	plastid	2405.12	1071.33
[show peptides]	187	160	14.8	4	<0.01	34.7	26.0	76	-0.297	AT3G14110.3	FLU, Tetratricopeptide repeat (TPR)-like superfamily protein (Gene model 3)	TPR proteins	VI) other metabolic pathways	plastid	2405.12	1071.33
[show peptides]	187	126	5.7	3	<0.01	52.0	26.0	76	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2405.12	1071.33
[show peptides]	187	126	6.1	3	<0.01	49.1	26.0	76	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2405.12	1071.33
[show peptides]	187	126	6.1	3	<0.01	48.5	26.0	76	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2405.12	1071.33
[show peptides]	187	54	14.6	2	<0.01	23.2	26.0	76	-0.469	AT2G17695.1	AT2G17695.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2405.12	1071.33
[show peptides]	187	54	14.6	2	<0.01	23.2	26.0	76	-0.469	AT2G17695.2	AT2G17695.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2405.12	1071.33
[show peptides]	187	54	14.6	2	<0.01	23.2	26.0	76	-0.469	AT2G17695.3	AT2G17695.3	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2405.12	1071.33
[show peptides]	187	53	5.0	1	<0.01	25.2	26.0	76	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2405.12	1071.33
[show peptides]	187	42	15.5	2	<0.01	23.8	26.0	76	-0.259	AT1G06680.2	PsbP-1, OEE2, OE23 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2405.12	1071.33
[show peptides]	187	38	2.1	1	<0.01	48.7	26.0	76	0.141	AT2G37500.1	Arginine biosynthesis protein ArgJ family	amino acid metabolism	VI) other metabolic pathways	plastid	2405.12	1071.33
[show peptides]	188	242	11.9	4	<0.01	38.9	25.0	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1670.66	1105.91
[show peptides]	188	57	6.1	1	<0.01	24.4	25.0	260	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1 (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1105.91
[show peptides]	188	57	6.7	1	<0.01	22.5	25.0	260	-0.106	AT4G03280.2	PetC, Rieske-FeS-protein, PGR1 (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1105.91
[show peptides]	189	442	44.1	10	<0.01	29.5	25.5	12	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2965.45	1090.87
[show peptides]	189	442	34.3	10	<0.01	37.5	25.5	12	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2965.45	1090.87
[show peptides]	189	442	35.4	10	<0.01	36.1	25.5	12	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2965.45	1090.87
[show peptides]	189	381	27.1	6	<0.01	29.2	25.5	12	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2965.45	1090.87
[show peptides]	189	381	33.9	6	<0.01	23.7	25.5	12	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2965.45	1090.87
[show peptides]	189	381	27.1	6	<0.01	29.2	25.5	12	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	2965.45	1090.87
[show peptides]	189	276	27.1	6	<0.01	30.2	25.5	12	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2965.45	1090.87
[show peptides]	189	240	11.2	4	<0.01	28.2	25.5	12	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2965.45	1090.87
[show peptides]	189	222	17.7	4	<0.01	28.0	25.5	12	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2965.45	1090.87
[show peptides]	189	146	14.3	4	<0.01	31.4	25.5	12	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2965.45	1090.87
[show peptides]	189	146	9.5	4	<0.01	48.2	25.5	12	-0.315	AT5G38660.2	APE1, acclimation of photosynthesis to environment (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2965.45	1090.87
[show peptides]	189	55	3.9	1	<0.01	27.5	25.5	12	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2965.45	1090.87
[show peptides]	189	43	6.7	2	<0.01	27.7	25.5	12	-0.258	AT3G52150.2	RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G52150.2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2965.45	1090.87
[show peptides]	189	34	4.6	1	<0.05	28.2	25.5	12	-0.170	AT3G62030.1	ROC4, rotamase CYP 4 (Gene model 1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2965.45	1090.87
[show peptides]	189	34	3.8	1	<0.05	34.3	25.5	12	-0.157	AT3G62030.2	ROC4, rotamase CYP 4 (Gene model 2)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2965.45	1090.87
[show peptides]	189	34	4.6	1	<0.05	28.1	25.5	12	-0.157	AT3G62030.3	ROC4, rotamase CYP 4 (Gene model 3)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2965.45	1090.87
[show peptides]	190	159	12.0	4	<0.01	28.2	24.7	700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	951.79	1118.05
[show peptides]	190	109	14.4	3	<0.01	23.2	24.7	700	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	951.79	1118.05
[show peptides]	190	95	7.3	2	<0.01	29.2	24.7	700	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	951.79	1118.05
[show peptides]	190	95	9.2	2	<0.01	23.7	24.7	700	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	951.79	1118.05
[show peptides]	190	95	7.3	2	<0.01	29.2	24.7	700	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	951.79	1118.05
[show peptides]	191	324	25.8	6	<0.05	28.2	25.3	120	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2194.55	1098.04
[show peptides]	191	215	12.1	4	<0.05	28.6	25.3	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2194.55	1098.04
[show peptides]	191	38	2.5	1	<0.05	42.9	25.3	120	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2194.55	1098.04
[show peptides]	192	393	27.5	6	<0.01	29.2	24.6	1500	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	393	34.4	6	<0.01	23.7	24.6	1500	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	393	27.5	6	<0.01	29.2	24.6	1500	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	380	36.8	8	<0.01	23.2	24.6	1500	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	1120.69
[show peptides]	192	267	12.0	3	<0.01	28.2	24.6	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	235	21.1	5	<0.01	25.2	24.6	1500	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	1120.69
[show peptides]	192	203	12.1	4	<0.01	28.6	24.6	1500	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	178	13.2	4	<0.01	28.2	24.6	1500	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	123	14.7	3	<0.01	24.8	24.6	1500	-0.597	AT4G37925.1	NdhM	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	42	6.8	1	<0.01	27.7	24.6	1500	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	192	38	6.2	1	<0.01	25.4	24.6	1500	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1120.69
[show peptides]	193	370	13.5	6	<0.01	28.2	24.8	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.81	1113.05
[show peptides]	193	318	29.9	6	<0.01	23.2	24.8	1000	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.81	1113.05
[show peptides]	193	299	27.5	6	<0.01	29.2	24.8	1000	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	725.81	1113.05
[show peptides]	193	299	34.4	6	<0.01	23.7	24.8	1000	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	725.81	1113.05
[show peptides]	193	299	27.5	6	<0.01	29.2	24.8	1000	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	725.81	1113.05
[show peptides]	193	297	13.6	5	<0.01	28.6	24.8	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.81	1113.05
[show peptides]	193	283	14.7	5	<0.01	28.2	24.8	1000	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	725.81	1113.05
[show peptides]	194	647	42.6	9	<0.01	27.7	24.9	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	634	27.5	7	<0.01	29.2	24.9	560	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	634	34.4	7	<0.01	23.7	24.9	560	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	634	27.5	7	<0.01	29.2	24.9	560	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	364	26.0	6	<0.01	22.6	24.9	560	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	235	11.2	4	<0.01	26.0	24.9	560	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	235	12.7	4	<0.01	23.3	24.9	560	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	202	22.2	4	<0.01	24.2	24.9	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	106	6.8	2	<0.01	38.9	24.9	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	194	78	9.0	1	<0.01	15.2	24.9	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1112.09
[show peptides]	195	364	13.5	6	<0.01	28.2	24.7	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.06	1118.58
[show peptides]	195	356	27.5	6	<0.01	29.2	24.7	1150	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	616.06	1118.58
[show peptides]	195	356	34.4	6	<0.01	23.7	24.7	1150	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	616.06	1118.58
[show peptides]	195	356	27.5	6	<0.01	29.2	24.7	1150	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	616.06	1118.58
[show peptides]	195	342	36.8	8	<0.01	23.2	24.7	1150	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.06	1118.58
[show peptides]	195	271	13.6	5	<0.01	28.6	24.7	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.06	1118.58
[show peptides]	195	257	14.7	5	<0.01	28.2	24.7	1150	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	616.06	1118.58
[show peptides]	195	51	5.0	1	<0.01	25.2	24.7	1150	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.06	1118.58
[show peptides]	196	282	29.9	6	<0.01	23.2	24.7	830	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	829.77	1116.62
[show peptides]	196	276	12.0	5	<0.01	28.2	24.7	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.77	1116.62
[show peptides]	196	194	12.1	4	<0.01	28.6	24.7	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.77	1116.62
[show peptides]	196	192	11.7	4	<0.01	29.2	24.7	830	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	829.77	1116.62
[show peptides]	196	192	14.7	4	<0.01	23.7	24.7	830	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	829.77	1116.62
[show peptides]	196	192	11.7	4	<0.01	29.2	24.7	830	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	829.77	1116.62
[show peptides]	196	168	13.2	4	<0.01	28.2	24.7	830	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	829.77	1116.62
[show peptides]	196	58	4.8	1	<0.01	27.7	24.7	830	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	829.77	1116.62
[show peptides]	197	325	27.5	6	<0.01	29.2	24.4	1700	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	197	325	34.4	6	<0.01	23.7	24.4	1700	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	197	325	27.5	6	<0.01	29.2	24.4	1700	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	197	292	32.8	6	<0.01	23.2	24.4	1700	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.56	1129.53
[show peptides]	197	252	12.0	5	<0.01	28.2	24.4	1700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	197	194	12.1	4	<0.01	28.6	24.4	1700	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	197	59	5.0	1	<0.01	25.2	24.4	1700	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.56	1129.53
[show peptides]	197	58	3.7	1	<0.01	29.9	24.4	1700	-0.106	AT1G19150.1	Lhca6	a) photosystem I	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	197	38	5.1	1	<0.01	24.8	24.4	1700	-0.597	AT4G37925.1	NdhM	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	197	38	6.2	1	<0.01	25.4	24.4	1700	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1129.53
[show peptides]	198	597	43.0	12	<0.01	29.5	25.1	220	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1814.27	1104.23
[show peptides]	198	597	33.4	12	<0.01	37.5	25.1	220	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1814.27	1104.23
[show peptides]	198	597	34.5	12	<0.01	36.1	25.1	220	-0.015	AT3G01500.3	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1814.27	1104.23
[show peptides]	198	413	27.9	7	<0.01	27.5	25.1	220	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1814.27	1104.23
[show peptides]	198	302	12.0	5	<0.01	28.2	25.1	220	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1814.27	1104.23
[show peptides]	198	230	17.7	4	<0.01	28.0	25.1	220	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1814.27	1104.23
[show peptides]	198	221	13.2	4	<0.01	28.2	25.1	220	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	1814.27	1104.23
[show peptides]	198	216	12.1	4	<0.01	28.6	25.1	220	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	1814.27	1104.23
[show peptides]	198	148	22.9	4	<0.01	23.2	25.1	220	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1814.27	1104.23
[show peptides]	198	147	8.7	3	<0.01	28.7	25.1	220	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	1814.27	1104.23
[show peptides]	198	67	4.2	1	<0.01	31.4	25.1	220	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1814.27	1104.23
[show peptides]	198	67	2.8	1	<0.01	48.2	25.1	220	-0.315	AT5G38660.2	APE1, acclimation of photosynthesis to environment (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1814.27	1104.23
[show peptides]	198	61	3.7	1	<0.01	38.9	25.1	220	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1814.27	1104.23
[show peptides]	198	43	1.6	1	<0.01	50.7	25.1	220	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	1814.27	1104.23
[show peptides]	199	618	30.2	8	<0.01	28.0	24.5	47	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2583.86	1125.91
[show peptides]	199	594	31.6	9	<0.01	31.1	24.5	47	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2583.86	1125.91
[show peptides]	199	391	31.6	6	<0.01	23.8	24.5	47	-0.291	AT4G25100.1	FSD1, ATFSD1 (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2583.86	1125.91
[show peptides]	199	391	31.6	6	<0.01	23.8	24.5	47	-0.291	AT4G25100.2	FSD1, ATFSD1 (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2583.86	1125.91
[show peptides]	199	391	31.6	6	<0.01	23.8	24.5	47	-0.291	AT4G25100.3	FSD1, ATFSD1 (Gene model 3)	antioxidants	VI) other metabolic pathways	plastid	2583.86	1125.91
[show peptides]	199	391	31.6	6	<0.01	23.8	24.5	47	-0.291	AT4G25100.5	FSD1, ATFSD1 (Gene model 5)	antioxidants	VI) other metabolic pathways	plastid	2583.86	1125.91
[show peptides]	199	363	30.0	6	<0.01	28.1	24.5	47	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2583.86	1125.91
[show peptides]	199	363	36.1	6	<0.01	23.8	24.5	47	-0.259	AT1G06680.2	PsbP-1, OEE2, OE23 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2583.86	1125.91
[show peptides]	199	361	37.2	8	<0.01	27.6	24.5	47	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2583.86	1125.91
[show peptides]	199	323	22.1	6	<0.01	27.5	24.5	47	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2583.86	1125.91
[show peptides]	199	317	26.9	7	<0.01	27.2	24.5	47	-0.355	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT3G26070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2583.86	1125.91
[show peptides]	199	283	22.8	6	<0.01	27.8	24.5	47	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2583.86	1125.91
[show peptides]	199	234	24.7	4	<0.01	28.5	24.5	47	-0.067	AT5G17170.1	ENH1, rubredoxin family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2583.86	1125.91
[show peptides]	199	182	16.1	4	<0.01	24.7	24.5	47	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2583.86	1125.91
[show peptides]	199	95	4.2	2	<0.01	52.0	24.5	47	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2583.86	1125.91
[show peptides]	199	95	4.5	2	<0.01	49.1	24.5	47	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2583.86	1125.91
[show peptides]	199	95	4.5	2	<0.01	48.5	24.5	47	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2583.86	1125.91
[show peptides]	199	80	9.6	2	<0.01	25.5	24.5	47	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2583.86	1125.91
[show peptides]	199	75	9.7	2	<0.01	26.2	24.5	47	-0.175	AT3G08740.1	Elongation factor P (EF-P) family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2583.86	1125.91
[show peptides]	199	62	7.9	2	<0.01	31.1	24.5	47	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2583.86	1125.91
[show peptides]	199	37	8.3	1	<0.05	26.0	24.5	47	-0.475	AT1G67700.1	AT1G67700.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2583.86	1125.91
[show peptides]	199	37	8.2	1	<0.05	26.1	24.5	47	-0.465	AT1G67700.2	AT1G67700.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2583.86	1125.91
[show peptides]	199	37	8.3	1	<0.05	25.9	24.5	47	-0.496	AT1G67700.3	AT1G67700.3	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2583.86	1125.91
[show peptides]	199	34	6.0	1	<0.05	29.1	24.5	47	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2583.86	1125.91
[show peptides]	200	687	27.9	10	<0.01	28.0	24.1	78	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	671	46.6	13	<0.01	24.7	24.1	78	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2396.67	1140.26
[show peptides]	200	464	21.1	8	<0.01	31.1	24.1	78	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	373	24.0	6	<0.01	28.1	24.1	78	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	373	28.8	6	<0.01	23.8	24.1	78	-0.259	AT1G06680.2	PsbP-1, OEE2, OE23 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	307	24.8	6	<0.01	27.5	24.1	78	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	261	14.6	5	<0.01	42.5	24.1	78	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2396.67	1140.26
[show peptides]	200	206	15.8	4	<0.01	34.3	24.1	78	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2396.67	1140.26
[show peptides]	200	206	14.3	4	<0.01	37.7	24.1	78	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2396.67	1140.26
[show peptides]	200	206	14.3	4	<0.01	37.7	24.1	78	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2396.67	1140.26
[show peptides]	200	195	16.9	5	<0.01	27.2	24.1	78	-0.355	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT3G26070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2396.67	1140.26
[show peptides]	200	170	14.0	3	<0.01	25.5	24.1	78	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2396.67	1140.26
[show peptides]	200	137	10.8	3	<0.01	31.5	24.1	78	-0.017	AT3G51140.1	AT3G51140.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67	1140.26
[show peptides]	200	124	21.2	4	<0.01	26.2	24.1	78	-0.175	AT3G08740.1	Elongation factor P (EF-P) family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2396.67	1140.26
[show peptides]	200	121	12.7	3	<0.01	24.0	24.1	78	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2396.67	1140.26
[show peptides]	200	113	12.5	2	<0.01	28.5	24.1	78	-0.067	AT5G17170.1	ENH1, rubredoxin family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2396.67	1140.26
[show peptides]	200	105	4.2	2	<0.01	52.0	24.1	78	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2396.67	1140.26
[show peptides]	200	105	4.5	2	<0.01	49.1	24.1	78	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2396.67	1140.26
[show peptides]	200	105	4.5	2	<0.01	48.5	24.1	78	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2396.67	1140.26
[show peptides]	200	66	6.3	2	<0.01	27.8	24.1	78	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2396.67	1140.26
[show peptides]	200	51	4.8	1	<0.01	25.4	24.1	78	-0.338	AT3G10920.1	MSD1, MEE33, ATMSD1, manganese superoxide dismutase 1 (Gene model 1)	antioxidants	VI) other metabolic pathways	mitochondrion	2396.67	1140.26
[show peptides]	200	51	4.8	1	<0.01	25.3	24.1	78	-0.358	AT3G10920.2	MSD1, MEE33, ATMSD1, manganese superoxide dismutase 1 (Gene model 2)	antioxidants	VI) other metabolic pathways	mitochondrion	2396.67	1140.26
[show peptides]	200	43	4.7	1	<0.01	27.7	24.1	78	0.138	AT1G44920.1	AT1G44920.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67	1140.26
[show peptides]	200	40	3.0	1	<0.01	28.2	24.1	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	40	3.0	1	<0.01	28.6	24.1	78	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	37	6.5	1	<0.01	28.6	24.1	78	-0.178	AT3G56650.1	Mog1, PsbP family protein (AT3G56650.1)	b) photosystem II	I) photophosphorylation	plastid	2396.67	1140.26
[show peptides]	200	34	8.3	1	<0.01	26.0	24.1	78	-0.475	AT1G67700.1	AT1G67700.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67	1140.26
[show peptides]	200	34	8.2	1	<0.01	26.1	24.1	78	-0.465	AT1G67700.2	AT1G67700.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67	1140.26
[show peptides]	200	34	8.3	1	<0.01	25.9	24.1	78	-0.496	AT1G67700.3	AT1G67700.3	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67	1140.26
[show peptides]	201	652	30.2	8	<0.01	28.0	24.5	29	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	585	26.0	8	<0.01	31.1	24.5	29	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	580	28.3	10	<0.01	27.5	24.5	29	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	421	33.2	7	<0.01	30.2	24.5	29	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	368	30.0	6	<0.01	28.1	24.5	29	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	368	36.1	6	<0.01	23.8	24.5	29	-0.259	AT1G06680.2	PsbP-1, OEE2, OE23 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	306	20.0	5	<0.01	31.1	24.5	29	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	237	16.9	5	<0.01	27.2	24.5	29	-0.355	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT3G26070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2727.08	1127.01
[show peptides]	201	230	22.6	3	<0.01	27.8	24.5	29	-0.001	AT3G61470.1	Lhca2	a) photosystem I	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	187	13.2	3	<0.01	28.7	24.5	29	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	185	25.8	4	<0.01	28.5	24.5	29	-0.067	AT5G17170.1	ENH1, rubredoxin family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2727.08	1127.01
[show peptides]	201	175	12.6	3	<0.01	24.7	24.5	29	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2727.08	1127.01
[show peptides]	201	165	6.7	3	<0.01	28.2	24.5	29	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2727.08	1127.01
[show peptides]	201	74	2.3	1	<0.01	52.0	24.5	29	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2727.08	1127.01
[show peptides]	201	74	2.5	1	<0.01	49.1	24.5	29	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2727.08	1127.01
[show peptides]	201	74	2.5	1	<0.01	48.5	24.5	29	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2727.08	1127.01
[show peptides]	201	37	4.0	1	<0.01	29.6	24.5	29	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2727.08	1127.01
[show peptides]	201	37	4.3	1	<0.01	27.8	24.5	29	0.168	AT3G61870.2	AT3G61870.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2727.08	1127.01
[show peptides]	202	598	28.3	10	<0.01	27.5	22.8	14	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2929.35	1188.94
[show peptides]	202	462	25.4	8	<0.01	28.2	22.8	14	-0.170	AT3G62030.1	ROC4, rotamase CYP 4 (Gene model 1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2929.35	1188.94
[show peptides]	202	462	21.1	8	<0.01	34.3	22.8	14	-0.157	AT3G62030.2	ROC4, rotamase CYP 4 (Gene model 2)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2929.35	1188.94
[show peptides]	202	462	25.5	8	<0.01	28.1	22.8	14	-0.157	AT3G62030.3	ROC4, rotamase CYP 4 (Gene model 3)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2929.35	1188.94
[show peptides]	202	282	27.4	6	<0.01	29.1	22.8	14	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2929.35	1188.94
[show peptides]	202	102	10.6	2	<0.01	28.0	22.8	14	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2929.35	1188.94
[show peptides]	202	82	9.3	2	<0.01	30.2	22.8	14	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2929.35	1188.94
[show peptides]	202	39	4.0	1	<0.05	29.6	22.8	14	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2929.35	1188.94
[show peptides]	202	39	4.3	1	<0.05	27.8	22.8	14	0.168	AT3G61870.2	AT3G61870.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2929.35	1188.94
[show peptides]	203	727	30.9	9	<0.01	28.0	24.2	120	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	612	59.6	9	<0.01	28.7	24.2	120	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	289	26.4	6	<0.01	28.6	24.2	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	286	31.9	5	<0.01	28.1	24.2	120	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	286	38.4	5	<0.01	23.8	24.2	120	-0.259	AT1G06680.2	PsbP-1, OEE2, OE23 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	281	33.2	6	<0.01	28.1	24.2	120	-0.006	AT2G34420.1	Lhcb1.5	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	260	14.7	4	<0.01	31.1	24.2	120	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	255	28.3	5	<0.01	24.7	24.2	120	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2194.55	1137.42
[show peptides]	203	119	10.9	2	<0.01	27.5	24.2	120	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	63	16.8	1	<0.01	13.4	24.2	120	-0.371	AT2G30790.1	PsbP2	b) photosystem II	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	60	2.3	1	<0.01	52.0	24.2	120	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2194.55	1137.42
[show peptides]	203	60	2.5	1	<0.01	49.1	24.2	120	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2194.55	1137.42
[show peptides]	203	60	2.5	1	<0.01	48.5	24.2	120	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2194.55	1137.42
[show peptides]	203	54	5.9	1	<0.01	28.5	24.2	120	-0.067	AT5G17170.1	ENH1, rubredoxin family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2194.55	1137.42
[show peptides]	203	54	7.1	1	<0.01	23.9	24.2	120	-0.133	AT5G17170.2	ENH1, rubredoxin family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2194.55	1137.42
[show peptides]	203	48	5.6	1	<0.01	24.2	24.2	120	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	2194.55	1137.42
[show peptides]	203	42	6.6	1	<0.01	25.5	24.2	120	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2194.55	1137.42
[show peptides]	204	527	24.2	8	<0.01	28.0	23.7	210	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	450	27.9	7	<0.01	27.5	23.7	210	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	336	22.3	8	<0.01	29.8	23.7	210	-0.058	AT5G06290.1	PrxB, 2-cysteine peroxiredoxin B	antioxidants	VI) other metabolic pathways	plastid	1816.14	1156.87
[show peptides]	204	306	22.9	7	<0.01	29.1	23.7	210	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1816.14	1156.87
[show peptides]	204	210	15.1	4	<0.01	28.7	23.7	210	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	184	24.0	5	<0.01	28.1	23.7	210	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	184	28.8	5	<0.01	23.8	23.7	210	-0.259	AT1G06680.2	PsbP-1, OEE2, OE23 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	151	11.2	3	<0.01	28.2	23.7	210	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	109	10.5	2	<0.01	31.1	23.7	210	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	83	8.5	2	<0.01	24.7	23.7	210	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1816.14	1156.87
[show peptides]	204	80	3.7	1	<0.01	38.9	23.7	210	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1816.14	1156.87
[show peptides]	204	79	4.2	2	<0.01	52.0	23.7	210	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1816.14	1156.87
[show peptides]	204	79	4.5	2	<0.01	49.1	23.7	210	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1816.14	1156.87
[show peptides]	204	79	4.5	2	<0.01	48.5	23.7	210	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1816.14	1156.87
[show peptides]	204	66	5.9	1	<0.01	28.5	23.7	210	-0.067	AT5G17170.1	ENH1, rubredoxin family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1816.14	1156.87
[show peptides]	204	66	7.1	2	<0.01	23.9	23.7	210	-0.133	AT5G17170.2	ENH1, rubredoxin family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1816.14	1156.87
[show peptides]	205	696	32.2	13	<0.01	27.5	22.5	220	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1814.32	1202.57
[show peptides]	205	381	31.2	8	<0.01	29.1	22.5	220	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1814.32	1202.57
[show peptides]	205	206	17.7	4	<0.01	28.0	22.5	220	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1814.32	1202.57
[show peptides]	205	34	3.7	1	<0.05	28.2	22.5	220	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1814.32	1202.57
[show peptides]	206	719	34.7	10	<0.01	28.0	23.2	260	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	538	41.0	9	<0.01	24.4	23.2	260	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1 (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	538	44.8	9	<0.01	22.5	23.2	260	-0.106	AT4G03280.2	PetC, Rieske-FeS-protein, PGR1 (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	348	20.0	5	<0.01	24.2	23.2	260	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	309	19.3	6	<0.01	38.9	23.2	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	177	17.1	4	<0.01	27.5	23.2	260	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	134	13.2	3	<0.01	29.1	23.2	260	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1670.66	1174.63
[show peptides]	206	133	23.4	3	<0.01	21.1	23.2	260	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	130	12.8	3	<0.01	29.8	23.2	260	-0.058	AT5G06290.1	PrxB, 2-cysteine peroxiredoxin B	antioxidants	VI) other metabolic pathways	plastid	1670.66	1174.63
[show peptides]	206	125	5.4	2	<0.01	39.5	23.2	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	100	4.2	2	<0.01	68.0	23.2	260	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	1670.66	1174.63
[show peptides]	206	82	8.4	2	<0.01	35.4	23.2	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	78	13.1	2	<0.01	17.4	23.2	260	0.552	ATCG00730.1	PetD, subunit IV	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	59	10.0	2	<0.01	25.5	23.2	260	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1670.66	1174.63
[show peptides]	206	36	4.9	1	<0.01	28.1	23.2	260	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	206	36	5.9	1	<0.05	23.8	23.2	260	-0.259	AT1G06680.2	PsbP-1, OEE2, OE23 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	1670.66	1174.63
[show peptides]	207	651	28.7	10	<0.01	27.5	23.2	24	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2782.70	1173.49
[show peptides]	207	123	10.4	2	<0.01	30.2	23.2	24	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2782.70	1173.49
[show peptides]	207	122	8.1	2	<0.01	28.2	23.2	24	-0.170	AT3G62030.1	ROC4, rotamase CYP 4 (Gene model 1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2782.70	1173.49
[show peptides]	207	122	6.7	2	<0.01	34.3	23.2	24	-0.157	AT3G62030.2	ROC4, rotamase CYP 4 (Gene model 2)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2782.70	1173.49
[show peptides]	207	122	8.1	2	<0.01	28.1	23.2	24	-0.157	AT3G62030.3	ROC4, rotamase CYP 4 (Gene model 3)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2782.70	1173.49
[show peptides]	207	116	15.1	2	<0.01	29.6	23.2	24	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2782.70	1173.49
[show peptides]	207	116	16.1	2	<0.01	27.8	23.2	24	0.168	AT3G61870.2	AT3G61870.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2782.70	1173.49
[show peptides]	207	59	8.3	2	<0.01	28.7	23.2	24	-0.118	AT2G05100.1	Lhcb2.1	b) photosystem II	I) photophosphorylation	plastid	2782.70	1173.49
[show peptides]	207	48	3.5	1	<0.01	31.1	23.2	24	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2782.70	1173.49
[show peptides]	207	35	7.0	1	<0.05	16.3	23.2	24	-0.640	AT3G63540.1	Mog1, PsbP family protein (AT3G63540.1)	b) photosystem II	I) photophosphorylation	plastid	2782.70	1173.49
[show peptides]	208	462	43.3	11	<0.01	22.6	22.6	1000	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	725.81	1197.94
[show peptides]	208	460	28.7	8	<0.01	27.5	22.6	1000	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	725.81	1197.94
[show peptides]	208	80	6.8	2	<0.01	28.7	22.6	1000	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	725.81	1197.94
[show peptides]	208	43	4.2	1	<0.01	28.0	22.6	1000	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	725.81	1197.94
[show peptides]	208	43	5.4	1	<0.01	22.0	22.6	1000	0.129	AT1G44575.2	PsbS, NPQ4 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	725.81	1197.94
[show peptides]	209	1410	75.5	21	<0.01	22.6	22.7	560	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	397	38.2	7	<0.01	27.7	22.7	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	369	23.1	5	<0.01	29.2	22.7	560	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	369	28.9	5	<0.01	23.7	22.7	560	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	369	23.1	5	<0.01	29.2	22.7	560	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	249	16.3	3	<0.01	27.8	22.7	560	-0.001	AT3G61470.1	Lhca2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	164	7.1	3	<0.01	26.0	22.7	560	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	164	8.0	3	<0.01	23.3	22.7	560	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	142	10.9	3	<0.01	28.0	22.7	560	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	103	14.5	2	<0.01	15.2	22.7	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	78	9.5	2	<0.01	24.2	22.7	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	73	3.7	1	<0.01	38.9	22.7	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	1194.50
[show peptides]	209	63	2.2	2	<0.01	54.1	22.7	560	-0.129	AT1G16350.1	Aldolase-type TIM barrel family protein (AT1G16350.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	1106.40	1194.50
[show peptides]	210	699	62.3	15	<0.01	22.3	22.6	330	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	1488.32	1200.43
[show peptides]	210	509	24.2	8	<0.01	28.0	22.6	330	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	1488.32	1200.43
[show peptides]	210	96	7.9	2	<0.01	29.1	22.6	330	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1488.32	1200.43
[show peptides]	210	83	5.0	2	<0.01	53.9	22.6	330	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1488.32	1200.43
[show peptides]	210	74	3.5	1	<0.01	40.9	22.6	330	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1488.32	1200.43
[show peptides]	210	45	3.9	1	<0.01	27.5	22.6	330	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1488.32	1200.43
[show peptides]	210	34	1.8	1	<0.05	44.1	22.6	330	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1488.32	1200.43
[show peptides]	211	514	28.7	9	<0.01	27.5	22.6	1150	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	616.06	1200.50
[show peptides]	211	408	35.8	10	<0.01	22.3	22.6	1150	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	616.06	1200.50
[show peptides]	211	206	12.0	4	<0.01	28.2	22.6	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.06	1200.50
[show peptides]	211	151	11.8	3	<0.01	24.0	22.6	1150	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.06	1200.50
[show peptides]	211	41	5.5	1	<0.05	27.8	22.6	1150	0.077	AT1G45474.1	Lhca5 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	616.06	1200.50
[show peptides]	211	41	5.5	1	<0.05	27.8	22.6	1150	0.077	AT1G45474.2	Lhca5 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	616.06	1200.50
[show peptides]	212	501	39.4	12	<0.01	22.6	22.6	830	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	829.77	1200.84
[show peptides]	212	177	18.2	5	<0.01	27.5	22.6	830	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	829.77	1200.84
[show peptides]	212	80	9.3	2	<0.01	22.0	22.6	830	0.129	AT1G44575.2	PsbS, NPQ4 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	829.77	1200.84
[show peptides]	212	80	7.2	2	<0.01	28.0	22.6	830	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	829.77	1200.84
[show peptides]	212	41	3.6	1	<0.01	24.0	22.6	830	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	829.77	1200.84
[show peptides]	213	428	25.2	7	<0.01	27.5	23.2	56	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2525.11	1176.50
[show peptides]	213	316	23.8	5	<0.01	28.0	23.2	56	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2525.11	1176.50
[show peptides]	213	315	18.0	5	<0.01	29.6	23.2	56	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2525.11	1176.50
[show peptides]	213	300	23.2	6	<0.01	27.8	23.2	56	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2525.11	1176.50
[show peptides]	213	149	30.1	3	<0.01	16.3	23.2	56	-0.640	AT3G63540.1	Mog1, PsbP family protein (AT3G63540.1)	b) photosystem II	I) photophosphorylation	plastid	2525.11	1176.50
[show peptides]	213	135	14.3	4	<0.01	33.7	23.2	56	-0.087	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G22700.1)	TPR proteins	VI) other metabolic pathways	plastid	2525.11	1176.50
[show peptides]	213	135	14.5	4	<0.01	33.1	23.2	56	-0.102	AT1G22700.2	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G22700.2)	TPR proteins	VI) other metabolic pathways	plastid	2525.11	1176.50
[show peptides]	213	135	20.4	4	<0.01	23.8	23.2	56	-0.156	AT1G22700.3	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G22700.3)	TPR proteins	VI) other metabolic pathways	plastid	2525.11	1176.50
[show peptides]	213	52	2.3	1	<0.01	52.0	23.2	56	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2525.11	1176.50
[show peptides]	213	52	2.5	1	<0.01	49.1	23.2	56	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2525.11	1176.50
[show peptides]	213	52	2.5	1	<0.01	48.5	23.2	56	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2525.11	1176.50
[show peptides]	213	35	6.1	1	<0.05	16.4	23.2	56	-0.810	AT1G07790.1	HTB1, Histone superfamily protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	2525.11	1176.50
[show peptides]	214	777	55.3	16	<0.01	22.6	22.5	1500	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	419.62	1204.78
[show peptides]	214	219	12.7	4	<0.01	24.0	22.5	1500	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	1204.78
[show peptides]	214	215	18.4	4	<0.01	27.8	22.5	1500	0.077	AT1G45474.1	Lhca5 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	419.62	1204.78
[show peptides]	214	215	18.4	4	<0.01	27.8	22.5	1500	0.077	AT1G45474.2	Lhca5 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	419.62	1204.78
[show peptides]	214	191	19.0	4	<0.01	27.5	22.5	1500	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	419.62	1204.78
[show peptides]	214	111	14.9	4	<0.01	21.6	22.5	1500	0.510	AT1G72610.1	GLP1, ATGER1, GER1, germin-like protein 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	extracellular	419.62	1204.78
[show peptides]	214	107	7.9	2	<0.01	28.0	22.5	1500	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	419.62	1204.78
[show peptides]	214	43	7.8	1	<0.01	27.8	22.5	1500	-0.001	AT3G61470.1	Lhca2	a) photosystem I	I) photophosphorylation	plastid	419.62	1204.78
[show peptides]	214	34	6.6	1	<0.05	25.5	22.5	1500	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	1204.78
[show peptides]	215	36	3.4	1	<0.05	22.3	22.3	700	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	951.79	1210.40
[show peptides]	216	539	28.7	9	<0.01	27.5	23.1	78	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	298	17.7	5	<0.01	28.0	23.1	78	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	183	12.4	3	<0.01	27.7	23.1	78	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	135	11.2	4	<0.01	26.0	23.1	78	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	135	12.7	4	<0.01	23.3	23.1	78	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	114	8.4	3	<0.01	33.1	23.1	78	-0.102	AT1G22700.2	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G22700.2)	TPR proteins	VI) other metabolic pathways	plastid	2394.82	1177.53
[show peptides]	216	114	11.8	3	<0.01	23.8	23.1	78	-0.156	AT1G22700.3	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G22700.3)	TPR proteins	VI) other metabolic pathways	plastid	2394.82	1177.53
[show peptides]	216	112	11.6	2	<0.01	24.2	23.1	78	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	100	13.2	3	<0.01	29.1	23.1	78	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2394.82	1177.53
[show peptides]	216	61	3.8	1	<0.01	28.5	23.1	78	-0.244	AT1G77090.1	Mog1, PsbP family protein (AT1G77090.1)	b) photosystem II	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	48	2.5	1	<0.01	42.8	23.1	78	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2394.82	1177.53
[show peptides]	216	48	3.2	1	<0.01	34.3	23.1	78	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2394.82	1177.53
[show peptides]	216	48	2.9	1	<0.01	37.7	23.1	78	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2394.82	1177.53
[show peptides]	216	48	2.9	1	<0.01	37.7	23.1	78	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2394.82	1177.53
[show peptides]	216	38	3.0	1	<0.05	28.2	23.1	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2394.82	1177.53
[show peptides]	216	36	6.1	1	<0.05	16.4	23.1	78	-0.810	AT1G07790.1	HTB1, Histone superfamily protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	2394.82	1177.53
[show peptides]	216	36	3.9	1	<0.05	25.5	23.1	78	-0.436	AT1G20810.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein (AT1G20810.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2394.82	1177.53
[show peptides]	216	34	3.5	1	<0.05	28.2	23.1	78	-0.170	AT3G62030.1	ROC4, rotamase CYP 4 (Gene model 1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2394.82	1177.53
[show peptides]	217	738	53.8	16	<0.01	22.6	22.3	1700	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	217	241	18.4	4	<0.01	27.8	22.3	1700	0.077	AT1G45474.1	Lhca5 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	217	241	18.4	4	<0.01	27.8	22.3	1700	0.077	AT1G45474.2	Lhca5 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	217	219	12.7	4	<0.01	24.0	22.3	1700	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.56	1212.90
[show peptides]	217	182	19.0	4	<0.01	27.5	22.3	1700	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	217	78	9.3	2	<0.01	22.0	22.3	1700	0.129	AT1G44575.2	PsbS, NPQ4 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	217	78	7.2	2	<0.01	28.0	22.3	1700	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	217	39	6.6	1	<0.05	25.5	22.3	1700	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.56	1212.90
[show peptides]	217	34	5.4	1	<0.05	28.3	22.3	1700	-0.303	AT5G13120.1	PnsL5 (Gene model 1)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	217	34	5.5	1	<0.05	27.9	22.3	1700	-0.270	AT5G13120.2	PnsL5 (Gene model 2)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1212.90
[show peptides]	218	797	50.7	11	<0.01	24.4	20.6	260	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1 (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1283.32
[show peptides]	218	797	55.2	11	<0.01	22.5	20.6	260	-0.106	AT4G03280.2	PetC, Rieske-FeS-protein, PGR1 (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1283.32
[show peptides]	218	394	20.0	5	<0.01	24.2	20.6	260	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1283.32
[show peptides]	218	111	14.1	2	<0.01	21.1	20.6	260	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	1670.66	1283.32
[show peptides]	219	812	43.0	12	<0.01	27.7	21.0	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	625	59.8	13	<0.01	22.3	21.0	560	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	378	14.1	5	<0.01	26.0	21.0	560	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	378	16.0	5	<0.01	23.3	21.0	560	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	187	18.7	3	<0.01	29.2	21.0	560	-0.014	AT1G61520.1	Lhca3 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	187	23.4	3	<0.01	23.7	21.0	560	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	187	18.7	3	<0.01	29.2	21.0	560	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	126	17.6	3	<0.01	24.2	21.0	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	100	14.5	2	<0.01	15.2	21.0	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	40	6.8	1	<0.05	23.1	21.0	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40	1266.94
[show peptides]	219	33	1.8	1	<0.05	44.1	21.0	560	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1106.40	1266.94
[show peptides]	220	124	6.8	2	<0.01	27.7	21.2	1000	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	725.81	1255.38
[show peptides]	220	69	7.4	2	<0.01	22.3	21.2	1000	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	725.81	1255.38
[show peptides]	220	55	4.1	1	<0.01	26.0	21.2	1000	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	725.81	1255.38
[show peptides]	220	55	4.8	1	<0.01	22.1	21.2	1000	0.186	AT3G54890.2	Lhca1 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	725.81	1255.38
[show peptides]	220	55	6.1	1	<0.01	17.5	21.2	1000	0.021	AT3G54890.3	Lhca1 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	725.81	1255.38
[show peptides]	220	55	4.7	1	<0.01	23.3	21.2	1000	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	725.81	1255.38
[show peptides]	221	179	13.2	4	<0.01	22.3	21.2	830	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	829.77	1258.17
[show peptides]	221	90	4.8	1	<0.01	27.7	21.2	830	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	829.77	1258.17
[show peptides]	221	53	4.1	1	<0.01	26.0	21.2	830	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	829.77	1258.17
[show peptides]	222	324	17.1	5	<0.01	25.7	20.8	29	-0.049	AT4G09650.1	F1 part, delta subunit (AtpD)	d) atp-synthase	I) photophosphorylation	plastid	2730.94	1273.22
[show peptides]	222	267	19.0	5	<0.01	31.1	20.8	29	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2730.94	1273.22
[show peptides]	222	45	7.9	1	<0.01	23.7	20.8	29	-0.403	AT3G26060.1	PrxQ, Thioredoxin superfamily protein (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2730.94	1273.22
[show peptides]	222	45	6.6	1	<0.01	24.4	20.8	29	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1 (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	2730.94	1273.22
[show peptides]	222	45	7.8	1	<0.01	23.8	20.8	29	-0.417	AT3G26060.2	PrxQ, Thioredoxin superfamily protein (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2730.94	1273.22
[show peptides]	222	45	7.1	1	<0.01	22.5	20.8	29	-0.106	AT4G03280.2	PetC, Rieske-FeS-protein, PGR1 (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	2730.94	1273.22
[show peptides]	223	198	17.6	5	<0.01	22.3	20.9	1500	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	419.62	1270.31
[show peptides]	223	146	19.3	5	<0.01	28.3	20.9	1500	-0.303	AT5G13120.1	PnsL5 (Gene model 1)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1270.31
[show peptides]	223	146	19.6	5	<0.01	27.9	20.9	1500	-0.270	AT5G13120.2	PnsL5 (Gene model 2)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1270.31
[show peptides]	223	108	7.6	2	<0.01	27.0	20.9	1500	-0.396	AT2G39470.1	PPL2 (Gene model 1)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1270.31
[show peptides]	223	108	7.8	2	<0.01	26.2	20.9	1500	-0.347	AT2G39470.2	PPL2 (Gene model 2)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1270.31
[show peptides]	223	80	4.8	1	<0.01	27.7	20.9	1500	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	419.62	1270.31
[show peptides]	223	34	4.1	1	<0.05	20.6	20.9	1500	0.005	AT3G27840.1	Rpl12-B, Ribosomal protein L12-B	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	1270.31
[show peptides]	224	214	22.0	5	<0.01	28.3	20.9	1700	-0.303	AT5G13120.1	PnsL5 (Gene model 1)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	214	22.4	5	<0.01	27.9	20.9	1700	-0.270	AT5G13120.2	PnsL5 (Gene model 2)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	210	17.6	5	<0.01	22.3	20.9	1700	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	206	18.9	4	<0.01	27.0	20.9	1700	-0.396	AT2G39470.1	PPL2 (Gene model 1)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	206	19.6	4	<0.01	26.2	20.9	1700	-0.347	AT2G39470.2	PPL2 (Gene model 2)	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	117	18.6	3	<0.01	20.1	20.9	1700	-0.131	ATCG01090.1	NdhI	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	115	6.8	2	<0.01	27.7	20.9	1700	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	53	4.1	1	<0.01	26.0	20.9	1700	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	53	4.8	1	<0.01	22.1	20.9	1700	0.186	AT3G54890.2	Lhca1 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	53	6.1	1	<0.01	17.5	20.9	1700	0.021	AT3G54890.3	Lhca1 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	224	53	4.7	1	<0.01	23.3	20.9	1700	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	303.56	1272.40
[show peptides]	225	325	17.1	5	<0.01	25.7	20.8	20	-0.049	AT4G09650.1	F1 part, delta subunit (AtpD)	d) atp-synthase	I) photophosphorylation	plastid	2829.94	1276.38
[show peptides]	225	112	12.7	2	<0.01	24.4	20.8	20	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1 (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	2829.94	1276.38
[show peptides]	225	112	13.8	2	<0.01	22.5	20.8	20	-0.106	AT4G03280.2	PetC, Rieske-FeS-protein, PGR1 (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	2829.94	1276.38
[show peptides]	225	40	7.9	1	<0.01	23.7	20.8	20	-0.403	AT3G26060.1	PrxQ, Thioredoxin superfamily protein (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2829.94	1276.38
[show peptides]	225	40	7.8	1	<0.01	23.8	20.8	20	-0.417	AT3G26060.2	PrxQ, Thioredoxin superfamily protein (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2829.94	1276.38
[show peptides]	225	33	3.2	1	<0.05	27.4	20.8	20	0.709	ATCG00150.1	F0 part, A subunit (AtpI)	d) atp-synthase	I) photophosphorylation	plastid	2829.94	1276.38
[show peptides]	226	690	56.1	13	<0.01	24.6	19.8	29	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2730.09	1320.65
[show peptides]	226	662	52.2	12	<0.01	21.1	19.8	29	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2730.09	1320.65
[show peptides]	226	621	54.7	12	<0.01	23.8	19.8	29	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2730.09	1320.65
[show peptides]	226	152	23.2	3	<0.01	17.4	19.8	29	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2730.09	1320.65
[show peptides]	226	44	7.6	1	<0.01	21.7	19.8	29	-0.497	AT5G40950.1	Rpl27, Ribosomal protein large subunit 27	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2730.09	1320.65
[show peptides]	226	34	1.8	1	<0.05	44.1	19.8	29	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2730.09	1320.65
[show peptides]	227	574	47.5	11	<0.01	23.8	19.7	75	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2411.13	1324.67
[show peptides]	227	463	37.4	10	<0.01	24.6	19.7	75	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2411.13	1324.67
[show peptides]	227	273	30.3	5	<0.01	17.4	19.7	75	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.13	1324.67
[show peptides]	227	142	22.8	3	<0.01	21.1	19.7	75	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2411.13	1324.67
[show peptides]	227	111	10.8	2	<0.01	23.1	19.7	75	0.102	AT1G32990.1	Rpl11, Plastid ribosomal protein 11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.13	1324.67
[show peptides]	227	52	5.2	1	<0.01	25.6	19.7	75	-0.210	AT5G63310.1	NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2, nucleoside diphosphate kinase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2411.13	1324.67
[show peptides]	228	629	47.5	12	<0.01	23.8	19.6	53	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2538.90	1327.97
[show peptides]	228	590	37.9	11	<0.01	23.9	19.6	53	-0.310	AT4G21280.2	PsbQ-1, OEC16, OE16 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2538.90	1327.97
[show peptides]	228	538	44.3	10	<0.01	24.6	19.6	53	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2538.90	1327.97
[show peptides]	228	292	36.1	6	<0.01	17.4	19.6	53	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2538.90	1327.97
[show peptides]	228	258	22.5	5	<0.01	25.6	19.6	53	-0.210	AT5G63310.1	NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2, nucleoside diphosphate kinase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2538.90	1327.97
[show peptides]	228	181	22.8	4	<0.01	21.1	19.6	53	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2538.90	1327.97
[show peptides]	228	45	6.3	1	<0.01	23.1	19.6	53	0.102	AT1G32990.1	Rpl11, Plastid ribosomal protein 11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2538.90	1327.97
[show peptides]	229	291	19.5	4	<0.01	27.7	19.8	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	251	14.1	4	<0.01	25.7	19.8	560	-0.049	AT4G09650.1	F1 part, delta subunit (AtpD)	d) atp-synthase	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	244	11.2	4	<0.01	26.0	19.8	560	-0.074	AT3G54890.1	Lhca1 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	244	12.7	4	<0.01	23.3	19.8	560	-0.189	AT3G54890.4	Lhca1 (Gene model 4)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	161	32.2	3	<0.01	15.0	19.8	560	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	145	14.0	3	<0.01	24.2	19.8	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	51	15.6	2	<0.01	23.7	19.8	560	-0.009	AT1G61520.2	Lhca3 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	51	12.5	2	<0.01	29.2	19.8	560	-0.014	AT1G61520.3	Lhca3 (Gene model 3)	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	45	6.8	1	<0.01	23.1	19.8	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	229	44	3.4	1	<0.01	22.3	19.8	560	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1319.98
[show peptides]	230	657	48.9	11	<0.01	21.1	19.3	12	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2966.47	1344.89
[show peptides]	230	553	44.3	10	<0.01	24.6	19.3	12	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2966.47	1344.89
[show peptides]	230	476	47.5	11	<0.01	23.8	19.3	12	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2966.47	1344.89
[show peptides]	230	436	37.9	10	<0.01	23.9	19.3	12	-0.310	AT4G21280.2	PsbQ-1, OEC16, OE16 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2966.47	1344.89
[show peptides]	230	253	35.5	5	<0.01	17.4	19.3	12	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2966.47	1344.89
[show peptides]	231	571	53.9	11	<0.01	24.6	19.4	15	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2899.27	1339.83
[show peptides]	231	531	47.8	9	<0.01	21.1	19.4	15	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2899.27	1339.83
[show peptides]	231	498	50.2	11	<0.01	23.8	19.4	15	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2899.27	1339.83
[show peptides]	231	455	40.6	10	<0.01	23.9	19.4	15	-0.310	AT4G21280.2	PsbQ-1, OEC16, OE16 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2899.27	1339.83
[show peptides]	232	672	43.0	11	<0.01	24.2	16.8	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40	1468.84
[show peptides]	232	409	25.1	5	<0.01	23.1	16.8	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40	1468.84
[show peptides]	232	204	41.3	4	<0.01	15.0	16.8	560	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	1106.40	1468.84
[show peptides]	232	117	35.2	3	<0.01	15.2	16.8	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1468.84
[show peptides]	232	61	6.4	1	<0.01	23.9	16.8	560	-0.107	AT4G32260.1	F0 part, B/B`subunit	d) atp-synthase	I) photophosphorylation	plastid	1106.40	1468.84
[show peptides]	232	59	4.4	1	<0.01	20.2	16.8	560	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1106.40	1468.84
[show peptides]	233	389	32.1	7	<0.01	24.2	16.6	1500	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	419.62	1478.22
[show peptides]	233	287	30.8	6	<0.01	14.2	16.6	1500	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	1478.22
[show peptides]	233	243	16.9	4	<0.01	23.1	16.6	1500	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	419.62	1478.22
[show peptides]	233	187	20.5	4	<0.01	24.8	16.6	1500	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	419.62	1478.22
[show peptides]	234	315	18.1	5	<0.01	17.4	15.7	260	0.552	ATCG00730.1	PetD, subunit IV	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	1526.50
[show peptides]	234	260	38.9	6	<0.01	20.2	15.7	260	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1670.66	1526.50
[show peptides]	234	249	44.2	6	<0.01	20.3	15.7	260	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1670.66	1526.50
[show peptides]	234	45	2.5	1	<0.01	39.5	15.7	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1670.66	1526.50
[show peptides]	235	296	24.0	6	<0.01	24.2	16.5	1700	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	303.56	1484.68
[show peptides]	235	280	25.6	5	<0.01	14.2	16.5	1700	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.56	1484.68
[show peptides]	235	219	20.5	4	<0.01	24.8	16.5	1700	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	303.56	1484.68
[show peptides]	235	200	16.9	4	<0.01	23.1	16.5	1700	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	303.56	1484.68
[show peptides]	236	378	42.1	9	<0.01	24.2	16.7	1000	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	725.81	1472.02
[show peptides]	236	209	16.9	4	<0.01	23.1	16.7	1000	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	725.81	1472.02
[show peptides]	236	92	14.5	2	<0.01	14.2	16.7	1000	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.81	1472.02
[show peptides]	236	42	17.5	1	<0.05	15.0	16.7	1000	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	725.81	1472.02
[show peptides]	236	36	4.1	1	<0.05	24.8	16.7	1000	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	725.81	1472.02
[show peptides]	237	217	19.5	5	<0.01	24.2	16.7	1150	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	616.06	1473.54
[show peptides]	237	163	16.4	3	<0.01	23.1	16.7	1150	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	616.06	1473.54
[show peptides]	237	135	24.8	3	<0.01	14.2	16.7	1150	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.06	1473.54
[show peptides]	237	44	4.1	1	<0.05	24.8	16.7	1150	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	616.06	1473.54
[show peptides]	237	37	6.5	1	<0.05	15.0	16.7	1150	-0.395	ATCG00750.1	Rps11, Ribosomal protein S11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.06	1473.54
[show peptides]	238	231	19.5	5	<0.01	24.2	16.7	830	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	829.77	1475.68
[show peptides]	238	142	16.4	3	<0.01	23.1	16.7	830	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	829.77	1475.68
[show peptides]	238	56	4.1	1	<0.01	24.8	16.7	830	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	829.77	1475.68
[show peptides]	238	49	4.4	1	<0.01	20.2	16.7	830	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	829.77	1475.68
[show peptides]	239	204	16.4	3	<0.01	23.1	16.6	330	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1492.91	1477.35
[show peptides]	239	87	13.1	2	<0.01	17.4	16.6	330	0.552	ATCG00730.1	PetD, subunit IV	c) cytochrome b6f complex	I) photophosphorylation	plastid	1492.91	1477.35
[show peptides]	239	71	7.3	1	<0.01	20.1	16.6	330	0.006	AT3G27830.1	Rpl12-A, Ribosomal protein L12-A	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1492.91	1477.35
[show peptides]	239	45	6.4	1	<0.01	23.9	16.6	330	-0.107	AT4G32260.1	F0 part, B/B`subunit	d) atp-synthase	I) photophosphorylation	plastid	1492.91	1477.35
[show peptides]	239	43	8.9	1	<0.01	20.2	16.6	330	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1492.91	1477.35
[show peptides]	240	175	17.2	4	<0.01	24.2	16.5	700	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	951.79	1486.32
[show peptides]	240	47	3.7	1	<0.01	23.1	16.5	700	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	951.79	1486.32
[show peptides]	241	243	41.3	4	<0.01	15.0	15.3	1150	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	616.06	1550.73
[show peptides]	241	160	12.7	3	<0.01	20.3	15.3	1150	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	616.06	1550.73
[show peptides]	241	160	13.2	3	<0.01	19.4	15.3	1150	-0.153	AT5G38410.2	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 2)	calvin cycle	II) carbon fixation	plastid	616.06	1550.73
[show peptides]	241	160	12.4	3	<0.01	20.8	15.3	1150	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	616.06	1550.73
[show peptides]	241	140	12.8	3	<0.01	20.2	15.3	1150	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	616.06	1550.73
[show peptides]	241	84	9.0	1	<0.01	15.5	15.3	1150	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.06	1550.73
[show peptides]	242	607	61.5	11	<0.01	15.0	15.2	560	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	1106.40	1553.45
[show peptides]	242	558	61.4	10	<0.01	15.2	15.2	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1553.45
[show peptides]	242	234	20.4	4	<0.01	20.3	15.2	560	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1106.40	1553.45
[show peptides]	242	234	21.3	4	<0.01	19.4	15.2	560	-0.153	AT5G38410.2	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 2)	calvin cycle	II) carbon fixation	plastid	1106.40	1553.45
[show peptides]	242	234	19.9	4	<0.01	20.8	15.2	560	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1106.40	1553.45
[show peptides]	242	216	20.6	4	<0.01	20.2	15.2	560	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1106.40	1553.45
[show peptides]	242	97	10.5	2	<0.01	23.1	15.2	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40	1553.45
[show peptides]	242	84	5.4	2	<0.01	39.5	15.2	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	1553.45
[show peptides]	242	80	9.5	2	<0.01	24.2	15.2	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40	1553.45
[show peptides]	243	639	60.2	11	<0.05	20.3	14.8	300	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1562.91	1577.99
[show peptides]	243	638	60.0	11	<0.05	20.2	14.8	300	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1562.91	1577.99
[show peptides]	243	496	49.7	9	<0.05	20.3	14.8	300	-0.192	AT5G38430.1	RbcS, ribulose-bisphosphate carboxylase small chain 3B	calvin cycle	II) carbon fixation	plastid	1562.91	1577.99
[show peptides]	243	269	30.3	6	<0.05	14.5	14.8	300	-0.035	ATCG00470.1	F1 part, epsilon subunit (AtpE)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	1577.99
[show peptides]	243	127	26.6	2	<0.05	15.0	14.8	300	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	1562.91	1577.99
[show peptides]	243	48	13.3	1	<0.05	12.7	14.8	300	-0.371	AT4G34620.1	Rps16, Small subunit ribosomal protein 16	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1562.91	1577.99
[show peptides]	244	289	45.5	5	<0.01	15.0	15.3	1000	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	725.81	1548.95
[show peptides]	244	179	20.4	4	<0.01	20.3	15.3	1000	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	725.81	1548.95
[show peptides]	244	179	21.3	4	<0.01	19.4	15.3	1000	-0.153	AT5G38410.2	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 2)	calvin cycle	II) carbon fixation	plastid	725.81	1548.95
[show peptides]	244	179	19.9	4	<0.01	20.8	15.3	1000	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	725.81	1548.95
[show peptides]	244	176	20.6	4	<0.01	20.2	15.3	1000	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	725.81	1548.95
[show peptides]	244	154	35.2	3	<0.01	15.2	15.3	1000	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	725.81	1548.95
[show peptides]	244	128	14.9	2	<0.01	15.5	15.3	1000	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.81	1548.95
[show peptides]	245	348	46.9	7	<0.01	15.0	15.2	1500	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	419.62	1555.54
[show peptides]	245	155	20.7	3	<0.01	15.2	15.2	1500	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	419.62	1555.54
[show peptides]	245	142	22.4	3	<0.01	15.5	15.2	1500	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	1555.54
[show peptides]	245	114	12.7	3	<0.01	20.3	15.2	1500	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	419.62	1555.54
[show peptides]	245	114	13.2	3	<0.01	19.4	15.2	1500	-0.153	AT5G38410.2	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 2)	calvin cycle	II) carbon fixation	plastid	419.62	1555.54
[show peptides]	245	114	12.4	3	<0.01	20.8	15.2	1500	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	419.62	1555.54
[show peptides]	246	182	23.8	3	<0.01	15.0	15.2	700	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	951.79	1554.41
[show peptides]	246	146	12.7	3	<0.01	20.3	15.2	700	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	951.79	1554.41
[show peptides]	246	146	13.2	3	<0.01	19.4	15.2	700	-0.153	AT5G38410.2	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 2)	calvin cycle	II) carbon fixation	plastid	951.79	1554.41
[show peptides]	246	146	12.4	3	<0.01	20.8	15.2	700	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	951.79	1554.41
[show peptides]	246	125	14.5	2	<0.01	15.2	15.2	700	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	951.79	1554.41
[show peptides]	246	92	9.0	1	<0.01	15.5	15.2	700	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	951.79	1554.41
[show peptides]	247	307	46.2	6	<0.01	15.0	15.2	830	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	829.77	1557.02
[show peptides]	247	189	20.4	4	<0.01	20.3	15.2	830	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	829.77	1557.02
[show peptides]	247	189	21.3	4	<0.01	19.4	15.2	830	-0.153	AT5G38410.2	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 2)	calvin cycle	II) carbon fixation	plastid	829.77	1557.02
[show peptides]	247	189	19.9	4	<0.01	20.8	15.2	830	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	829.77	1557.02
[show peptides]	247	186	22.4	3	<0.01	15.5	15.2	830	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	829.77	1557.02
[show peptides]	247	170	20.6	4	<0.01	20.2	15.2	830	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	829.77	1557.02
[show peptides]	247	143	35.2	3	<0.01	15.2	15.2	830	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	829.77	1557.02
[show peptides]	248	256	41.3	4	<0.01	15.0	15.1	1700	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	303.56	1562.47
[show peptides]	248	142	35.2	3	<0.01	15.2	15.1	1700	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	303.56	1562.47
[show peptides]	248	84	9.0	1	<0.01	15.5	15.1	1700	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.56	1562.47
[show peptides]	248	72	4.4	1	<0.01	20.2	15.1	1700	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	303.56	1562.47
[show peptides]	248	31	0.6	1	<0.05	137.5	15.1	1700	-0.135	AT5G44700.1	Leucine-rich repeat transmembrane protein kinase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	303.56	1562.47
[show peptides]	249	823	60.2	12	<0.01	20.3	14.5	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1357.29	1593.80
[show peptides]	249	762	60.0	12	<0.01	20.2	14.5	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	1593.80
[show peptides]	249	681	59.7	11	<0.01	20.3	14.5	430	-0.192	AT5G38430.1	RbcS, ribulose-bisphosphate carboxylase small chain 3B	calvin cycle	II) carbon fixation	plastid	1357.29	1593.80
[show peptides]	249	81	9.0	1	<0.01	15.2	14.5	430	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1357.29	1593.80
[show peptides]	250	271	19.3	4	<0.01	15.3	10.0	560	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1889.03
[show peptides]	250	229	41.3	4	<0.01	15.0	10.0	560	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	1106.40	1889.03
[show peptides]	250	99	23.5	1	<0.01	9.0	10.0	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40	1889.03
[show peptides]	251	59	8.9	1	<0.01	11.3	9.9	1700	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1893.07
[show peptides]	251	56	7.6	1	<0.01	15.3	9.9	1700	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	303.56	1893.07
[show peptides]	252	365	32.8	6	<0.01	24.4	9.7	340	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1 (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54	1905.36
[show peptides]	252	365	35.7	6	<0.01	22.5	9.7	340	-0.106	AT4G03280.2	PetC, Rieske-FeS-protein, PGR1 (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54	1905.36
[show peptides]	252	178	15.3	3	<0.01	24.2	9.7	340	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54	1905.36
[show peptides]	252	40	7.6	1	<0.05	15.3	9.7	340	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	1470.54	1905.36
[show peptides]	252	34	1.8	1	<0.05	44.1	9.7	340	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1470.54	1905.36
[show peptides]	253	167	15.9	3	<0.01	15.3	9.9	1500	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	419.62	1894.74
[show peptides]	253	70	8.9	1	<0.01	11.3	9.9	1500	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1894.74
[show peptides]	254	88	7.6	1	<0.01	15.3	9.9	1000	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	725.81	1892.84
[show peptides]	254	41	15.1	1	<0.01	7.7	9.9	1000	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	725.81	1892.84
[show peptides]	254	33	10.0	1	<0.05	14.6	9.9	1000	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	725.81	1892.84
[show peptides]	255	36	7.6	1	<0.01	15.3	9.8	830	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	829.77	1897.59
[show peptides]	256	428	25.0	7	<0.01	17.1	8.9	560	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	1106.40	1966.23
[show peptides]	256	308	56.8	5	<0.01	9.0	8.9	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40	1966.23
[show peptides]	256	96	15.2	2	<0.01	15.3	8.9	560	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	1106.40	1966.23
[show peptides]	257	370	21.9	7	<0.01	17.1	9.0	1700	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	303.56	1960.91
[show peptides]	257	70	8.9	1	<0.01	11.3	9.0	1700	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	1960.91
[show peptides]	258	395	21.9	7	<0.01	17.1	9.0	1500	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	419.62	1960.67
[show peptides]	258	63	8.9	1	<0.01	11.3	9.0	1500	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	1960.67
[show peptides]	259	265	16.9	5	<0.01	17.1	9.0	1000	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	725.81	1960.16
[show peptides]	259	75	8.9	1	<0.01	11.3	9.0	1000	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	725.81	1960.16
[show peptides]	260	306	21.9	7	<0.01	17.1	9.0	830	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	829.77	1960.76
[show peptides]	261	106	16.9	3	<0.01	17.1	8.8	340	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	1470.54	1969.39
[show peptides]	261	51	6.1	1	<0.01	24.4	8.8	340	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1 (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54	1969.39
[show peptides]	261	51	6.7	1	<0.01	22.5	8.8	340	-0.106	AT4G03280.2	PetC, Rieske-FeS-protein, PGR1 (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54	1969.39
[show peptides]	262	411	75.3	6	<0.01	9.0	7.8	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40	2047.56
[show peptides]	262	185	9.1	3	<0.01	39.5	7.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	2047.56
[show peptides]	262	136	10.6	3	<0.01	17.1	7.8	560	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	1106.40	2047.56
[show peptides]	262	33	1.8	1	<0.05	44.1	7.8	560	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1106.40	2047.56
[show peptides]	263	245	56.8	5	<0.01	9.0	7.9	1700	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	303.56	2038.14
[show peptides]	264	252	56.8	5	<0.01	9.0	7.9	1500	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	419.62	2039.78
[show peptides]	265	143	39.5	3	<0.01	9.0	7.7	340	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1470.54	2056.06
[show peptides]	266	266	56.8	5	<0.01	9.0	73.8	43	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	2612.21	374.82
[show peptides]	267	123	23.3	2	<0.01	7.7	7.0	260	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	1670.66	2112.45
[show peptides]	267	120	22.9	2	<0.01	9.4	7.0	260	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1670.66	2112.45
[show peptides]	267	110	6.6	2	<0.01	35.4	7.0	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	2112.45
[show peptides]	267	71	3.1	1	<0.01	38.9	7.0	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1670.66	2112.45
[show peptides]	268	101	22.9	2	<0.01	9.4	6.9	1000	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	725.81	2114.45
[show peptides]	268	100	23.3	2	<0.01	7.7	6.9	1000	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	725.81	2114.45
[show peptides]	269	119	22.9	2	<0.01	9.4	7.0	210	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1841.63	2110.41
[show peptides]	270	135	22.9	2	<0.01	9.4	6.9	560	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1106.40	2118.20
[show peptides]	270	118	23.3	2	<0.01	7.7	6.9	560	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	1106.40	2118.20
[show peptides]	270	117	11.5	3	<0.01	13.2	6.9	560	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	1106.40	2118.20
[show peptides]	270	56	16.0	1	<0.01	9.0	6.9	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40	2118.20
[show peptides]	270	34	1.8	1	<0.01	44.1	6.9	560	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1106.40	2118.20
[show peptides]	271	107	23.3	2	<0.01	7.7	6.9	830	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	829.77	2118.32
[show peptides]	271	100	22.9	2	<0.01	9.4	6.9	830	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	829.77	2118.32
[show peptides]	272	46	10.8	1	<0.01	9.4	6.7	340	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1470.54	2130.64
[show peptides]	273	181	19.2	4	<0.01	13.2	5.9	560	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	1106.40	2195.66
[show peptides]	273	70	3.1	1	<0.01	38.9	5.9	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	2195.66
[show peptides]	274	90	10.8	2	<0.01	13.2	5.9	1000	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	725.81	2196.81
[show peptides]	275	53	6.9	1	<0.01	13.2	5.8	830	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	829.77	2204.35
[show peptides]	276	88	36.8	1	<0.01	4.5	3.9	260	0.329	ATCG00560.1	PsbL	b) photosystem II	I) photophosphorylation	plastid	1670.66	2366.10
[show peptides]	276	78	18.9	2	<0.01	4.2	3.9	260	1.086	ATCG00600.1	PetG	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.66	2366.10
[show peptides]	276	36	20.5	1	<0.01	4.4	3.9	260	0.646	ATCG00570.1	PsbF, beta-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1670.66	2366.10
[show peptides]	277	1649	39.1	30	<0.01	102.1	83.4	130	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2160.97	327.09
[show peptides]	277	733	25.0	18	<0.01	103.5	83.4	130	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2160.97	327.09
[show peptides]	277	74	3.0	2	<0.01	68.3	83.4	130	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2160.97	327.09
[show peptides]	277	42	1.1	1	<0.01	112.9	83.4	130	-0.141	AT4G33010.1	Glycine decarboxylase, P-protein 1 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2160.97	327.09
[show peptides]	277	42	1.1	1	<0.01	106.2	83.4	130	-0.125	AT4G33010.2	Glycine decarboxylase, P-protein 1 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2160.97	327.09
[show peptides]	278	117	36.8	1	<0.01	4.5	3.8	560	0.329	ATCG00560.1	PsbL	b) photosystem II	I) photophosphorylation	plastid	1106.40	2368.96
[show peptides]	279	109	36.8	1	<0.01	4.5	3.9	1000	0.329	ATCG00560.1	PsbL	b) photosystem II	I) photophosphorylation	plastid	725.81	2361.29
[show peptides]	280	1967	45.3	36	<0.01	102.1	81.9	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2225.59	334.00
[show peptides]	280	677	18.1	14	<0.01	103.5	81.9	110	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2225.59	334.00
[show peptides]	280	460	19.8	8	<0.01	42.9	81.9	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2225.59	334.00
[show peptides]	280	264	16.1	6	<0.01	43.0	81.9	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2225.59	334.00
[show peptides]	280	112	6.7	3	<0.01	28.2	81.9	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2225.59	334.00
[show peptides]	280	41	2.3	1	<0.01	52.0	81.9	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2225.59	334.00
[show peptides]	280	41	2.5	1	<0.01	49.1	81.9	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2225.59	334.00
[show peptides]	280	41	2.5	1	<0.01	48.5	81.9	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2225.59	334.00
[show peptides]	281	937	27.3	18	<0.01	86.1	74.3	74	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2416.78	372.47
[show peptides]	281	780	26.5	15	<0.01	80.0	74.3	74	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2416.78	372.47
[show peptides]	281	780	26.5	15	<0.01	79.8	74.3	74	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2416.78	372.47
[show peptides]	281	186	7.0	5	<0.01	77.0	74.3	74	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2416.78	372.47
[show peptides]	281	162	6.8	5	<0.01	76.5	74.3	74	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2416.78	372.47
[show peptides]	281	85	2.8	2	<0.01	102.1	74.3	74	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2416.78	372.47
[show peptides]	282	1188	24.3	23	<0.01	102.1	82.4	85	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2356.16	331.87
[show peptides]	282	116	2.3	3	<0.01	176.8	82.4	85	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2356.16	331.87
[show peptides]	282	116	2.3	3	<0.01	179.9	82.4	85	-0.148	AT5G04140.2	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2356.16	331.87
[show peptides]	282	75	6.3	2	<0.01	42.8	82.4	85	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2356.16	331.87
[show peptides]	282	75	7.9	2	<0.01	34.3	82.4	85	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2356.16	331.87
[show peptides]	282	75	7.1	2	<0.01	37.7	82.4	85	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2356.16	331.87
[show peptides]	282	75	7.1	2	<0.01	37.7	82.4	85	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2356.16	331.87
[show peptides]	282	47	5.1	2	<0.01	47.4	82.4	85	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2356.16	331.87
[show peptides]	282	47	5.1	2	<0.01	47.4	82.4	85	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2356.16	331.87
[show peptides]	283	1595	37.4	30	<0.01	72.0	63.0	27	-0.384	AT5G04590.1	SIR, sulfite reductase	sulfur metabolism	VI) other metabolic pathways	plastid	2745.15	446.14
[show peptides]	283	379	13.6	7	<0.01	63.3	63.0	27	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2745.15	446.14
[show peptides]	283	265	25.3	7	<0.01	35.1	63.0	27	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2745.15	446.14
[show peptides]	283	188	22.4	6	<0.01	35.0	63.0	27	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2745.15	446.14
[show peptides]	283	149	7.6	4	<0.01	66.8	63.0	27	-0.211	AT1G31800.1	CYP97A3, LUT5, cytochrome P450, family 97, subfamily A, polypeptide 3	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2745.15	446.14
[show peptides]	283	125	6.8	3	<0.01	65.5	63.0	27	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2745.15	446.14
[show peptides]	283	125	4.2	4	<0.01	80.0	63.0	27	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2745.15	446.14
[show peptides]	283	125	4.2	4	<0.01	79.8	63.0	27	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2745.15	446.14
[show peptides]	283	60	3.6	1	<0.01	30.2	63.0	27	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2745.15	446.14
[show peptides]	283	58	2.4	1	<0.01	65.6	63.0	27	-0.218	AT4G19170.1	NCED4, CCD4, nine-cis-epoxycarotenoid dioxygenase 4	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2745.15	446.14
[show peptides]	283	45	7.0	1	<0.01	19.8	63.0	27	0.224	AT3G20390.1	Endoribonuclease L-PSP family protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2745.15	446.14
[show peptides]	283	33	1.8	1	<0.01	44.1	63.0	27	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2745.15	446.14
[show peptides]	284	1283	38.7	24	<0.01	62.1	59.6	15	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2898.73	473.99
[show peptides]	284	977	27.3	16	<0.01	68.0	59.6	15	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2898.73	473.99
[show peptides]	284	562	24.4	13	<0.01	65.8	59.6	15	-0.160	AT3G06350.1	EMB3004, MEE32, putative dehydroquinate dehydratase, putative shikimate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.73	473.99
[show peptides]	284	260	15.1	8	<0.01	69.3	59.6	15	-0.300	AT3G55400.1	OVA1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	cytosol	2898.73	473.99
[show peptides]	284	258	10.8	5	<0.01	61.7	59.6	15	0.006	AT1G57770.1	FAD/NAD(P)-binding oxidoreductase family protein (AT1G57770.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.73	473.99
[show peptides]	284	174	9.7	4	<0.01	58.2	59.6	15	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2898.73	473.99
[show peptides]	284	131	4.3	2	<0.01	62.9	59.6	15	-0.170	AT5G17530.1	Phosphoglucosamine mutase family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.73	473.99
[show peptides]	284	131	4.3	2	<0.01	62.9	59.6	15	-0.170	AT5G17530.2	Phosphoglucosamine mutase family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.73	473.99
[show peptides]	284	131	4.1	2	<0.01	67.0	59.6	15	-0.222	AT5G17530.3	Phosphoglucosamine mutase family protein (Gene model 3)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.73	473.99
[show peptides]	284	119	5.0	2	<0.01	65.2	59.6	15	-0.199	AT4G15110.1	CYP97B3, cytochrome P450, family 97, subfamily B, polypeptide 3	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.73	473.99
[show peptides]	284	113	5.4	3	<0.01	67.3	59.6	15	-0.215	AT1G70820.1	Phosphoglucomutase, putative / glucose phosphomutase, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.73	473.99
[show peptides]	284	112	4.7	3	<0.01	64.9	59.6	15	-0.235	AT2G35040.1	AICARFT, IMPCHase bienzyme family protein (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2898.73	473.99
[show peptides]	284	112	5.1	3	<0.01	59.5	59.6	15	-0.290	AT2G35040.2	AICARFT, IMPCHase bienzyme family protein (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2898.73	473.99
[show peptides]	284	45	2.4	1	<0.01	35.0	59.6	15	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2898.73	473.99
[show peptides]	284	44	5.6	1	<0.01	24.2	59.6	15	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	2898.73	473.99
[show peptides]	284	36	3.9	1	<0.05	22.0	59.6	15	0.129	AT1G44575.2	PsbS, NPQ4 (Gene model 2)	b) photosystem II	I) photophosphorylation	plastid	2898.73	473.99
[show peptides]	284	35	3.0	1	<0.05	28.0	59.6	15	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2898.73	473.99
[show peptides]	284	33	1.8	1	<0.01	44.1	59.6	15	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2898.73	473.99
[show peptides]	285	1387	60.8	24	<0.01	52.0	49.1	12	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2980.17	583.97
[show peptides]	285	1305	56.5	22	<0.01	49.1	49.1	12	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2980.17	583.97
[show peptides]	285	1305	57.1	22	<0.01	48.5	49.1	12	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2980.17	583.97
[show peptides]	285	514	19.4	9	<0.01	51.5	49.1	12	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2980.17	583.97
[show peptides]	285	509	23.9	9	<0.01	51.6	49.1	12	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2980.17	583.97
[show peptides]	285	257	16.9	7	<0.01	52.5	49.1	12	-0.095	AT1G63940.1	MDAR6, monodehydroascorbate reductase 6 (Gene model 1)	antioxidants	VI) other metabolic pathways	mitochondrion	2980.17	583.97
[show peptides]	285	257	16.6	7	<0.01	53.3	49.1	12	-0.089	AT1G63940.2	MDAR6, monodehydroascorbate reductase 6 (Gene model 2)	antioxidants	VI) other metabolic pathways	mitochondrion	2980.17	583.97
[show peptides]	285	257	17.0	7	<0.01	52.1	49.1	12	-0.095	AT1G63940.4	MDAR6, monodehydroascorbate reductase 6 (Gene model 4)	antioxidants	VI) other metabolic pathways	mitochondrion	2980.17	583.97
[show peptides]	286	1420	53.2	22	<0.01	52.0	46.2	12	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2971.88	621.23
[show peptides]	286	1420	56.5	22	<0.01	49.1	46.2	12	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2971.88	621.23
[show peptides]	286	1420	57.1	22	<0.01	48.5	46.2	12	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2971.88	621.23
[show peptides]	286	597	28.3	11	<0.01	50.1	46.2	12	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2971.88	621.23
[show peptides]	286	382	21.2	8	<0.01	48.3	46.2	12	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2971.88	621.23
[show peptides]	286	382	21.3	8	<0.01	48.2	46.2	12	-0.168	AT5G58330.2	Lactate/malate dehydrogenase family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2971.88	621.23
[show peptides]	286	224	13.0	6	<0.01	49.8	46.2	12	-0.149	AT4G31990.1	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	224	13.0	6	<0.01	49.8	46.2	12	-0.149	AT4G31990.2	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	224	12.8	6	<0.01	51.0	46.2	12	-0.140	AT4G31990.3	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	224	13.2	6	<0.01	49.3	46.2	12	-0.138	AT4G31990.4	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5 (Gene model 4)	amino acid metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	205	13.6	6	<0.01	52.0	46.2	12	-0.320	AT1G08550.1	NPQ1, AVDE1, non-photochemical quenching 1 (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2971.88	621.23
[show peptides]	286	205	13.6	6	<0.01	52.0	46.2	12	-0.320	AT1G08550.2	NPQ1, AVDE1, non-photochemical quenching 1 (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2971.88	621.23
[show peptides]	286	169	14.9	5	<0.01	47.6	46.2	12	-0.348	AT3G56940.1	CRD1, CHL27, ACSF, dicarboxylate diiron protein, putative (Gene model 1)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	169	18.4	5	<0.01	39.2	46.2	12	-0.299	AT3G56940.2	CRD1, CHL27, ACSF, dicarboxylate diiron protein, putative (Gene model 2)	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	158	10.7	4	<0.01	47.4	46.2	12	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	158	10.7	4	<0.01	47.4	46.2	12	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	158	10.7	4	<0.01	47.4	46.2	12	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	104	13.0	3	<0.01	44.4	46.2	12	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2971.88	621.23
[show peptides]	286	43	3.4	1	<0.01	44.2	46.2	12	-0.057	AT5G14200.1	ATIMD1, IMD1, isopropylmalate dehydrogenase 1 (Gene model 1)	glucosinolate metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	43	4.7	1	<0.01	33.1	46.2	12	-0.002	AT5G14200.2	ATIMD1, IMD1, isopropylmalate dehydrogenase 1 (Gene model 2)	glucosinolate metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	286	43	3.6	1	<0.01	41.9	46.2	12	-0.040	AT5G14200.3	ATIMD1, IMD1, isopropylmalate dehydrogenase 1 (Gene model 3)	glucosinolate metabolism	VI) other metabolic pathways	plastid	2971.88	621.23
[show peptides]	287	720	35.4	13	<0.01	39.8	35.8	12	-0.134	AT5G36700.1	ATPGLP1, PGLP1, 2-phosphoglycolate phosphatase 1 (Gene model 1)	other proteins	II) carbon fixation	plastid	2972.38	803.59
[show peptides]	287	720	35.4	13	<0.01	39.8	35.8	12	-0.134	AT5G36700.2	ATPGLP1, PGLP1, 2-phosphoglycolate phosphatase 1 (Gene model 2)	other proteins	II) carbon fixation	plastid	2972.38	803.59
[show peptides]	287	720	35.4	13	<0.01	39.8	35.8	12	-0.134	AT5G36700.4	ATPGLP1, PGLP1, 2-phosphoglycolate phosphatase 1 (Gene model 4)	other proteins	II) carbon fixation	plastid	2972.38	803.59
[show peptides]	287	289	22.5	6	<0.01	37.6	35.8	12	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family (Gene model 1)	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2972.38	803.59
[show peptides]	287	170	12.2	4	<0.01	37.4	35.8	12	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.38	803.59
[show peptides]	287	151	11.4	3	<0.01	35.8	35.8	12	0.165	AT1G53240.1	mMDH1, Lactate/malate dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2972.38	803.59
[show peptides]	287	122	6.2	2	<0.01	40.4	35.8	12	-0.105	AT1G31190.1	IMPL1, myo-inositol monophosphatase like 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.38	803.59
[show peptides]	287	108	5.1	2	<0.01	37.4	35.8	12	0.096	AT5G09660.1	PMDH2, peroxisomal NAD-malate dehydrogenase 2 (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2972.38	803.59
[show peptides]	287	108	5.4	2	<0.01	35.0	35.8	12	0.147	AT5G09660.2	PMDH2, peroxisomal NAD-malate dehydrogenase 2 (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2972.38	803.59
[show peptides]	287	108	5.3	2	<0.01	36.3	35.8	12	0.077	AT5G09660.3	PMDH2, peroxisomal NAD-malate dehydrogenase 2 (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2972.38	803.59
[show peptides]	287	108	5.0	2	<0.01	38.7	35.8	12	0.032	AT5G09660.4	PMDH2, peroxisomal NAD-malate dehydrogenase 2 (Gene model 4)	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2972.38	803.59
[show peptides]	287	95	8.6	2	<0.01	33.0	35.8	12	-0.119	AT5G47760.1	PGLP2, ATPGLP2, ATPK5, 2-phosphoglycolate phosphatase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.38	803.59
[show peptides]	287	32	2.1	1	<0.05	49.9	35.8	12	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2972.38	803.59
[show peptides]	287	31	1.8	1	<0.01	44.1	35.8	12	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2972.38	803.59