Gelmap. Spot visualization by LUH

Proteinlist

-	ID	Mascot score	SC [%]	Peptides	FDR	Calculated mass[kDa]	Apparent mass 2D[kDa]	Apparent mass 1D[kDa]	GRAVY score	Accession	Name	Protein complex/Metabolic pathway	Physiological function	Assingned location in GelMap	X	Y
[show peptides]	1	1666	46.4	28	<0.01	65.5	62.9	16	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2895.85	447.52
[show peptides]	2	835	27.6	15	<0.01	65.5	62.3	12	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2970.97	452.16
[show peptides]	3	60	8.8	1	<0.05	13.0	2.1	260	0.234	AT2G26500.1	PetM, putative (Gene model 1)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1666.10	2523.49
[show peptides]	3	60	8.8	1	<0.05	13.0	2.1	260	0.234	AT2G26500.2	PetM, putative (Gene model 2)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1666.10	2523.49
[show peptides]	3	60	11.8	1	<0.05	9.9	2.1	260	-0.038	AT2G26500.3	PetM, putative (Gene model 3)	c) cytochrome b6f complex	I) photophosphorylation	plastid	1666.10	2523.49
[show peptides]	4	1672	31.2	31	<0.01	121.0	88.1	39	-0.321	AT3G19170.1	PreP1, presequence protease, AtPreP1, ATZNMP	proteases	V) protein folding & processing	plastid	2640.00	307.72
[show peptides]	4	40	1.6	1	<0.01	79.9	88.1	39	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2640.00	307.72
[show peptides]	5	2699	59.7	47	<0.01	100.6	82.3	46	-0.261	AT1G63770.4	Peptidase M1 family protein (Gene model 4)	proteases	V) protein folding & processing	cytosol	2589.93	332.30
[show peptides]	5	2698	54.1	47	<0.01	110.8	82.3	46	-0.263	AT1G63770.3	Peptidase M1 family protein (Gene model 3)	proteases	V) protein folding & processing	cytosol	2589.93	332.30
[show peptides]	5	1362	34.8	28	<0.01	102.1	82.3	46	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2589.93	332.30
[show peptides]	5	252	7.5	7	<0.01	108.2	82.3	46	-0.179	AT2G05710.1	ACO3, aconitase 3	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2589.93	332.30
[show peptides]	5	43	1.6	1	<0.01	79.9	82.3	46	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2589.93	332.30
[show peptides]	6	169	12.0	2	<0.01	20.1	17.6	12	0.006	AT3G27830.1	Rpl12-A, Ribosomal protein L12-A	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2969.33	1428.44
[show peptides]	6	48	6.4	1	<0.01	23.9	17.6	12	-0.107	AT4G32260.1	F0 part, B/B`subunit	d) atp-synthase	I) photophosphorylation	plastid	2969.33	1428.44
[show peptides]	6	45	5.0	1	<0.01	24.2	17.6	12	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	2969.33	1428.44
[show peptides]	6	33	1.8	1	<0.05	44.1	17.6	12	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2969.33	1428.44
[show peptides]	7	2500	51.0	43	<0.01	82.3	70.0	22	-0.204	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2804.18	397.94
[show peptides]	7	1558	47.4	27	<0.01	80.0	70.0	22	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2804.18	397.94
[show peptides]	7	1558	47.4	27	<0.01	79.8	70.0	22	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2804.18	397.94
[show peptides]	7	480	15.3	11	<0.01	88.8	70.0	22	-0.360	AT5G65620.1	Zincin-like metalloproteases family protein (AT5G65620.1)	proteases	V) protein folding & processing	plastid	2804.18	397.94
[show peptides]	7	357	12.5	7	<0.01	81.3	70.0	22	-0.330	AT5G36210.1	Alpha/beta-Hydrolases superfamily protein (AT5G36210.1)	proteases	V) protein folding & processing	plastid	2804.18	397.94
[show peptides]	7	125	6.4	4	<0.01	86.3	70.0	22	-0.466	AT4G09020.1	ATISA3, ISA3, isoamylase 3	starch metabolism	VI) other metabolic pathways	plastid	2804.18	397.94
[show peptides]	8	2084	45.1	36	<0.05	82.3	69.4	29	-0.204	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2731.89	401.60
[show peptides]	8	1799	42.9	29	<0.05	80.0	69.4	29	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2731.89	401.60
[show peptides]	8	1799	43.0	29	<0.05	79.8	69.4	29	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2731.89	401.60
[show peptides]	8	436	14.9	11	<0.05	88.8	69.4	29	-0.360	AT5G65620.1	Zincin-like metalloproteases family protein (AT5G65620.1)	proteases	V) protein folding & processing	plastid	2731.89	401.60
[show peptides]	8	326	12.0	8	<0.05	79.0	69.4	29	-0.366	AT5G10540.1	Zincin-like metalloproteases family protein (AT5G10540.1)	proteases	V) protein folding & processing	plastid	2731.89	401.60
[show peptides]	9	989	50.9	16	<0.01	35.1	31.5	15	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	866	50.2	15	<0.01	35.0	31.5	15	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	505	26.4	8	<0.01	37.9	31.5	15	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2905.35	907.02
[show peptides]	9	432	25.8	7	<0.01	35.0	31.5	15	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	349	23.8	7	<0.01	35.8	31.5	15	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2905.35	907.02
[show peptides]	9	326	19.8	6	<0.01	29.4	31.5	15	-0.334	AT4G17600.1	LIL3:1, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	281	19.0	5	<0.01	33.3	31.5	15	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2905.35	907.02
[show peptides]	9	270	16.8	4	<0.01	30.5	31.5	15	-0.053	AT2G34460.1	NAD(P)-binding Rossmann-fold superfamily protein (AT2G34460.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	234	16.4	4	<0.01	30.2	31.5	15	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.7	3	<0.01	35.7	31.5	15	-0.022	AT4G22890.1	PGR5-LIKE A (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.7	3	<0.01	35.7	31.5	15	-0.022	AT4G22890.2	PGR5-LIKE A (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.7	3	<0.01	35.7	31.5	15	-0.022	AT4G22890.3	PGR5-LIKE A (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.8	3	<0.01	35.5	31.5	15	-0.029	AT4G22890.4	PGR5-LIKE A (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.8	3	<0.01	35.6	31.5	15	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	222	7.8	3	<0.01	35.6	31.5	15	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	217	11.4	3	<0.01	31.1	31.5	15	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	119	16.7	3	<0.01	28.6	31.5	15	-0.251	AT5G47110.1	LIL3:2, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	88	7.2	2	<0.01	31.3	31.5	15	-0.008	AT1G16880.1	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	61	6.4	1	<0.01	24.4	31.5	15	-0.193	AT5G07020.1	Proline-rich family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	58	5.6	1	<0.01	22.7	31.5	15	0.084	AT1G16880.2	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	45	3.1	1	<0.01	38.9	31.5	15	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2905.35	907.02
[show peptides]	9	38	3.2	1	<0.05	38.9	31.5	15	-0.283	AT4G28740.1	AT4G28740.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2905.35	907.02
[show peptides]	9	34	3.4	1	<0.05	35.2	31.5	15	-0.173	AT4G31530.1	NAD(P)-binding Rossmann-fold superfamily protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	9	34	3.3	1	<0.05	36.7	31.5	15	-0.188	AT4G31530.2	NAD(P)-binding Rossmann-fold superfamily protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.35	907.02
[show peptides]	10	1068	57.2	19	<0.01	35.1	31.2	12	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	1042	57.1	18	<0.01	35.0	31.2	12	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	586	44.0	10	<0.01	35.0	31.2	12	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	231	17.5	4	<0.01	30.5	31.2	12	-0.053	AT2G34460.1	NAD(P)-binding Rossmann-fold superfamily protein (AT2G34460.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	201	20.4	4	<0.01	30.2	31.2	12	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	194	13.8	3	<0.01	37.9	31.2	12	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2972.10	913.30
[show peptides]	10	146	7.2	2	<0.01	35.8	31.2	12	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2972.10	913.30
[show peptides]	10	118	10.7	2	<0.01	31.3	31.2	12	-0.008	AT1G16880.1	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.7	31.2	12	-0.022	AT4G22890.1	PGR5-LIKE A (Gene model 1)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.7	31.2	12	-0.022	AT4G22890.2	PGR5-LIKE A (Gene model 2)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.7	31.2	12	-0.022	AT4G22890.3	PGR5-LIKE A (Gene model 3)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.5	31.2	12	-0.029	AT4G22890.4	PGR5-LIKE A (Gene model 4)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	80	3.4	1	<0.01	35.6	31.2	12	-0.016	AT4G22890.5	PGR5-LIKE A (Gene model 5)	g) auxiliary proteins	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	78	5.6	1	<0.01	22.7	31.2	12	0.084	AT1G16880.2	Uridylyltransferase-related similar to ACT domain-containing protein (AT1G16880.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.10	913.30
[show peptides]	10	67	4.5	1	<0.01	31.1	31.2	12	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2972.10	913.30
[show peptides]	10	41	4.4	1	<0.05	33.3	31.2	12	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2972.10	913.30
[show peptides]	10	41	4.6	1	<0.05	32.3	31.2	12	-0.077	AT2G21170.2	TIM, PDTPI, triosephosphate isomerase (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2972.10	913.30
[show peptides]	11	90	14.4	2	<0.01	14.5	15.7	12	-0.035	ATCG00470.1	F1 part, epsilon subunit (AtpE)	d) atp-synthase	I) photophosphorylation	plastid	2968.37	1527.74
[show peptides]	11	64	6.3	1	<0.01	23.8	15.7	12	-0.089	AT2G44920.2	Tetratricopeptide repeat (TPR)-like superfamily protein (AT2G44920.2)	TPR proteins	VI) other metabolic pathways	plastid	2968.37	1527.74
[show peptides]	11	58	4.4	1	<0.01	20.2	15.7	12	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	2968.37	1527.74
[show peptides]	12	271	15.9	6	<0.01	17.7	12.6	18	0.201	AT4G01150.1	AT4G01150.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2861.43	1713.98
[show peptides]	12	149	23.6	3	<0.01	18.5	12.6	18	0.070	AT2G46820.1	PsaP, pTAC8, TMP14 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2861.43	1713.98
[show peptides]	12	149	23.6	3	<0.01	18.5	12.6	18	0.070	AT2G46820.2	PsaP, pTAC8, TMP14 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2861.43	1713.98
[show peptides]	12	68	13.0	1	<0.01	7.3	12.6	18	-0.158	AT3G63160.1	AT3G63160.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2861.43	1713.98
[show peptides]	13	183	10.4	4	<0.01	17.7	12.0	12	0.201	AT4G01150.1	AT4G01150.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2976.85	1751.88
[show peptides]	13	137	24.7	3	<0.01	18.5	12.0	12	0.070	AT2G46820.1	PsaP, pTAC8, TMP14 (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2976.85	1751.88
[show peptides]	13	137	24.7	3	<0.01	18.5	12.0	12	0.070	AT2G46820.2	PsaP, pTAC8, TMP14 (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2976.85	1751.88
[show peptides]	13	52	13.0	1	<0.01	7.3	12.0	12	-0.158	AT3G63160.1	AT3G63160.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2976.85	1751.88
[show peptides]	14	859	41.0	13	<0.01	44.5	11.0	40	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	705	28.4	13	<0.01	47.7	11.0	40	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	259	8.7	4	<0.01	55.3	11.0	40	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	220	11.2	4	<0.01	28.2	11.0	40	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	203	11.1	4	<0.01	46.6	11.0	40	-0.215	AT2G17630.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2637.32	1819.80
[show peptides]	14	167	17.1	4	<0.01	14.6	11.0	40	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	159	12.3	5	<0.01	40.3	11.0	40	-0.074	AT3G14420.1	Aldolase-type TIM barrel family protein (AT3G14420.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.3	5	<0.01	40.3	11.0	40	-0.074	AT3G14420.2	Aldolase-type TIM barrel family protein (AT3G14420.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.9	5	<0.01	38.2	11.0	40	-0.046	AT3G14420.4	Aldolase-type TIM barrel family protein (AT3G14420.4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.5	5	<0.01	39.5	11.0	40	-0.054	AT3G14420.5	Aldolase-type TIM barrel family protein (AT3G14420.5)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	159	12.3	5	<0.01	40.3	11.0	40	-0.005	AT3G14420.6	Aldolase-type TIM barrel family protein (AT3G14420.6)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32	1819.80
[show peptides]	14	144	5.7	3	<0.01	52.0	11.0	40	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	10.6	3	<0.01	37.7	11.0	40	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	10.6	3	<0.01	37.7	11.0	40	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	6.1	3	<0.01	49.1	11.0	40	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	144	6.1	3	<0.01	48.5	11.0	40	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	130	6.9	4	<0.01	80.0	11.0	40	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	130	6.9	4	<0.01	79.8	11.0	40	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	113	7.9	3	<0.01	45.9	11.0	40	-0.102	AT5G18660.1	PCB2, NAD(P)-binding Rossmann-fold superfamily protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2637.32	1819.80
[show peptides]	14	113	9.1	2	<0.01	34.3	11.0	40	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	93	7.8	3	<0.01	43.0	11.0	40	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2637.32	1819.80
[show peptides]	14	81	5.8	1	<0.01	18.4	11.0	40	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	81	5.5	1	<0.01	19.3	11.0	40	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2637.32	1819.80
[show peptides]	14	58	2.3	1	<0.01	46.1	11.0	40	-0.284	AT1G77490.1	TAPX, thylakoidal ascorbate peroxidase	antioxidants	VI) other metabolic pathways	plastid	2637.32	1819.80
[show peptides]	15	130	17.1	4	<0.01	14.6	10.9	21	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2823.36	1825.10
[show peptides]	15	79	5.8	1	<0.01	18.4	10.9	21	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2823.36	1825.10
[show peptides]	15	79	5.5	1	<0.01	19.3	10.9	21	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2823.36	1825.10
[show peptides]	16	109	17.1	4	<0.01	14.6	10.9	26	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2758.31	1822.36
[show peptides]	16	97	5.8	1	<0.01	18.4	10.9	26	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2758.31	1822.36
[show peptides]	16	97	5.5	1	<0.01	19.3	10.9	26	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2758.31	1822.36
[show peptides]	17	89	5.8	1	<0.01	18.4	10.2	11	-0.160	AT5G64040.1	PsaN, putative (Gene model 1)	a) photosystem I	I) photophosphorylation	plastid	2981.67	1873.89
[show peptides]	17	89	5.5	1	<0.01	19.3	10.2	11	0.029	AT5G64040.2	PsaN, putative (Gene model 2)	a) photosystem I	I) photophosphorylation	plastid	2981.67	1873.89
[show peptides]	18	1476	45.9	25	<0.01	53.0	104.3	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	18	189	26.7	5	<0.01	20.2	104.3	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	18	178	22.1	4	<0.01	20.3	104.3	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	18	178	21.5	4	<0.01	20.8	104.3	430	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1357.29	254.23
[show peptides]	19	1218	29.7	24	<0.01	102.1	86.3	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.70	314.94
[show peptides]	19	930	18.5	17	<0.01	112.1	86.3	170	-0.301	AT1G06950.1	Tic110, ATTIC110, translocon at the inner envelope membrane of chloroplasts 110	protein transporters	III) transport	plastid	1988.70	314.94
[show peptides]	19	574	13.8	12	<0.01	115.2	86.3	170	-0.391	AT4G01800.1	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1 (Gene model 1)	protein transporters	III) transport	plastid	1988.70	314.94
[show peptides]	19	573	13.3	12	<0.01	114.4	86.3	170	-0.215	AT1G56500.1	Haloacid dehalogenase-like hydrolase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.70	314.94
[show peptides]	19	424	12.2	10	<0.01	103.5	86.3	170	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1988.70	314.94
[show peptides]	19	35	2.3	1	<0.05	52.0	86.3	170	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1988.70	314.94
[show peptides]	19	35	2.5	1	<0.05	49.1	86.3	170	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1988.70	314.94
[show peptides]	19	35	2.5	1	<0.05	48.5	86.3	170	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1988.70	314.94
[show peptides]	20	43	1.1	1	<0.01	83.0	1.6	890	0.015	AT5G12080.1	MSL10, ATMSL10, mechanosensitive channel of small conductance-like 10 (Gene model 1)	other transporters	III) transport	plasma membrane	782.19	2568.11
[show peptides]	20	43	1.1	1	<0.01	83.0	1.6	890	0.015	AT5G12080.2	MSL10, ATMSL10, mechanosensitive channel of small conductance-like 10 (Gene model 2)	other transporters	III) transport	plasma membrane	782.19	2568.11
[show peptides]	20	43	1.1	1	<0.01	83.0	1.6	890	0.015	AT5G12080.3	MSL10, ATMSL10, mechanosensitive channel of small conductance-like 10 (Gene model 3)	other transporters	III) transport	plasma membrane	782.19	2568.11
[show peptides]	21	1341	45.7	25	<0.01	53.0	97.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	275.71
[show peptides]	21	68	4.4	1	<0.01	20.2	97.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	275.71
[show peptides]	22	740	20.5	15	<0.01	80.0	69.6	69	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2442.77	400.22
[show peptides]	22	740	20.5	15	<0.01	79.8	69.6	69	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2442.77	400.22
[show peptides]	22	223	8.8	6	<0.01	76.5	69.6	69	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2442.77	400.22
[show peptides]	23	105	2.7	2	<0.01	82.5	94.2	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	285.39
[show peptides]	23	77	1.9	2	<0.01	121.1	94.2	1500	-0.260	ATCG00190.1	RpoB, RNA polymerase subunit beta	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62	285.39
[show peptides]	23	54	1.1	1	<0.01	85.2	94.2	1500	0.577	ATCG01010.1	NdhF	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	285.39
[show peptides]	23	51	0.9	1	<0.01	83.2	94.2	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	285.39
[show peptides]	23	45	1.2	1	<0.01	102.9	94.2	1500	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62	285.39
[show peptides]	24	546	11.6	10	<0.01	82.5	76.3	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	525	13.9	12	<0.01	83.2	76.3	560	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	288	11.1	5	<0.01	53.0	76.3	560	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1106.40	361.26
[show peptides]	24	227	10.8	4	<0.01	39.5	76.3	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	189	8.2	3	<0.01	51.9	76.3	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	171	6.8	2	<0.01	38.9	76.3	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	156	6.9	3	<0.01	56.0	76.3	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	24	52	2.4	1	<0.01	55.3	76.3	560	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1106.40	361.26
[show peptides]	25	2131	51.0	40	<0.01	102.1	81.6	140	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2089.28	335.26
[show peptides]	25	1143	31.9	25	<0.01	103.5	81.6	140	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2089.28	335.26
[show peptides]	25	164	6.5	6	<0.01	108.9	81.6	140	-0.447	AT5G15450.1	APG6, ClpB3, ClpB-P, casein lytic proteinase B3	other HSP	V) protein folding & processing	plastid	2089.28	335.26
[show peptides]	25	88	5.4	3	<0.01	108.6	81.6	140	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2089.28	335.26
[show peptides]	26	136	3.5	3	<0.01	82.5	88.8	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	305.21
[show peptides]	26	73	2.3	2	<0.01	83.2	88.8	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	305.21
[show peptides]	26	66	1.2	1	<0.01	102.9	88.8	1700	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.56	305.21
[show peptides]	26	48	0.9	1	<0.01	115.1	88.8	1700	-0.341	AT1G79560.1	FtsH12, FtsH protease 12, EMB156, EMB36, EMB1047	proteases	V) protein folding & processing	plastid	303.56	305.21
[show peptides]	27	1208	42.0	22	<0.01	53.0	86.2	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	315.48
[show peptides]	27	195	10.5	4	<0.01	47.4	86.2	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	315.48
[show peptides]	27	195	10.5	4	<0.01	47.4	86.2	430	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	315.48
[show peptides]	27	195	10.5	4	<0.01	47.4	86.2	430	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	315.48
[show peptides]	27	49	1.8	1	<0.01	115.2	86.2	430	-0.391	AT4G01800.1	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1 (Gene model 1)	protein transporters	III) transport	plastid	1357.29	315.48
[show peptides]	27	49	1.7	1	<0.05	117.4	86.2	430	-0.350	AT4G01800.2	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1 (Gene model 2)	protein transporters	III) transport	plastid	1357.29	315.48
[show peptides]	28	80	1.2	1	<0.01	102.9	89.2	1500	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62	303.41
[show peptides]	28	43	0.9	1	<0.01	115.1	89.2	1500	-0.341	AT1G79560.1	FtsH12, FtsH protease 12, EMB156, EMB36, EMB1047	proteases	V) protein folding & processing	plastid	419.62	303.41
[show peptides]	28	36	0.9	1	<0.05	83.2	89.2	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	303.41
[show peptides]	28	31	3.1	1	<0.05	28.7	89.2	1500	-0.256	AT1G06380.1	Ribosomal protein L1p/L10e family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62	303.41
[show peptides]	29	114	3.5	3	<0.01	82.5	82.5	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	331.25
[show peptides]	29	75	2.3	2	<0.01	83.2	82.5	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	331.25
[show peptides]	30	129	3.5	3	<0.01	82.5	82.9	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	329.28
[show peptides]	30	84	2.3	2	<0.01	83.2	82.9	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	329.28
[show peptides]	31	370	16.1	9	<0.01	85.3	77.9	1500	-0.525	AT2G38040.1	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62	353.08
[show peptides]	31	370	16.1	9	<0.01	85.3	77.9	1500	-0.525	AT2G38040.2	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62	353.08
[show peptides]	31	200	3.7	4	<0.01	82.5	77.9	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	353.08
[show peptides]	31	128	2.7	2	<0.01	88.7	77.9	1500	-0.293	AT5G53170.1	FtsH11, FtsH protease 11	proteases	V) protein folding & processing	plastid	419.62	353.08
[show peptides]	32	706	17.8	14	<0.01	103.5	79.5	270	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1654.25	345.33
[show peptides]	32	574	18.1	11	<0.01	56.0	79.5	270	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	464	11.3	9	<0.01	102.1	79.5	270	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1654.25	345.33
[show peptides]	32	372	11.8	6	<0.01	51.9	79.5	270	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	196	10.8	4	<0.01	39.5	79.5	270	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	127	6.5	3	<0.01	47.4	79.5	270	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1654.25	345.33
[show peptides]	32	127	6.5	3	<0.01	47.4	79.5	270	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1654.25	345.33
[show peptides]	32	127	6.5	3	<0.01	47.4	79.5	270	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1654.25	345.33
[show peptides]	32	81	4.9	2	<0.01	55.3	79.5	270	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	64	2.8	1	<0.01	53.9	79.5	270	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	60	3.8	1	<0.01	35.4	79.5	270	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	32	41	3.1	1	<0.05	38.9	79.5	270	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1654.25	345.33
[show peptides]	33	1717	37.1	32	<0.01	108.6	80.3	170	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.03	341.62
[show peptides]	33	1414	29.8	26	<0.01	102.1	80.3	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.03	341.62
[show peptides]	33	896	22.3	19	<0.01	103.5	80.3	170	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1988.03	341.62
[show peptides]	34	310	7.3	6	<0.01	85.3	77.6	1700	-0.525	AT2G38040.1	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	303.56	354.70
[show peptides]	34	310	7.3	6	<0.01	85.3	77.6	1700	-0.525	AT2G38040.2	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	303.56	354.70
[show peptides]	34	209	3.7	4	<0.01	82.5	77.6	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	354.70
[show peptides]	34	125	2.7	2	<0.01	88.7	77.6	1700	-0.293	AT5G53170.1	FtsH11, FtsH protease 11	proteases	V) protein folding & processing	plastid	303.56	354.70
[show peptides]	35	734	30.7	14	<0.01	53.0	79.4	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	345.96
[show peptides]	35	379	9.0	8	<0.01	103.5	79.4	430	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1357.29	345.96
[show peptides]	35	175	2.6	2	<0.01	99.8	79.4	430	-0.546	AT1G69830.1	ATAMY3, AMY3, alpha-amylase-like 3	starch metabolism	VI) other metabolic pathways	plastid	1357.29	345.96
[show peptides]	35	88	5.1	2	<0.01	47.4	79.4	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29	345.96
[show peptides]	35	58	4.4	1	<0.01	20.2	79.4	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	345.96
[show peptides]	36	419	14.4	7	<0.01	53.0	65.3	470	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1239.02	429.37
[show peptides]	36	298	6.7	6	<0.01	83.2	65.3	470	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1239.02	429.37
[show peptides]	36	274	6.3	6	<0.01	82.5	65.3	470	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1239.02	429.37
[show peptides]	37	64	3.5	1	<0.01	63.8	69.4	34	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	2683.68	401.27
[show peptides]	37	64	3.5	1	<0.01	63.8	69.4	34	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	2683.68	401.27
[show peptides]	38	1003	26.9	19	<0.01	86.1	74.5	87	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2348.58	371.10
[show peptides]	38	808	20.0	15	<0.01	80.0	74.5	87	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	808	20.0	15	<0.01	79.8	74.5	87	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	194	3.9	6	<0.01	176.8	74.5	87	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2348.58	371.10
[show peptides]	38	194	3.9	6	<0.01	179.9	74.5	87	-0.148	AT5G04140.2	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2348.58	371.10
[show peptides]	38	129	4.3	3	<0.01	92.6	74.5	87	-0.473	AT5G03650.1	SBE2.2, starch branching enzyme 2.2	starch metabolism	VI) other metabolic pathways	plastid	2348.58	371.10
[show peptides]	38	84	3.5	2	<0.01	76.5	74.5	87	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2348.58	371.10
[show peptides]	38	83	6.3	2	<0.01	42.8	74.5	87	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	83	7.9	2	<0.01	34.3	74.5	87	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	83	7.1	2	<0.01	37.7	74.5	87	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	83	7.1	2	<0.01	37.7	74.5	87	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	59	2.3	1	<0.01	52.0	74.5	87	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	59	2.5	1	<0.01	49.1	74.5	87	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	38	59	2.5	1	<0.01	48.5	74.5	87	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2348.58	371.10
[show peptides]	39	1218	31.8	20	<0.01	88.7	75.1	170	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 1)	CR88	V) protein folding & processing	plastid	1988.08	367.74
[show peptides]	39	1218	31.9	20	<0.01	88.3	75.1	170	-0.543	AT2G04030.2	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 2)	CR88	V) protein folding & processing	plastid	1988.08	367.74
[show peptides]	39	547	14.2	12	<0.01	102.1	75.1	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08	367.74
[show peptides]	39	140	4.7	3	<0.01	68.3	75.1	170	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08	367.74
[show peptides]	39	92	5.7	3	<0.01	86.1	75.1	170	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1988.08	367.74
[show peptides]	39	42	2.3	1	<0.01	52.0	75.1	170	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1988.08	367.74
[show peptides]	39	42	0.9	1	<0.01	108.6	75.1	170	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08	367.74
[show peptides]	39	42	2.5	1	<0.01	49.1	75.1	170	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	1988.08	367.74
[show peptides]	39	42	2.5	1	<0.01	48.5	75.1	170	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	1988.08	367.74
[show peptides]	40	853	20.3	17	<0.01	102.1	74.5	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2224.04	370.99
[show peptides]	40	804	26.8	16	<0.01	88.7	74.5	110	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 1)	CR88	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	40	804	26.9	16	<0.01	88.3	74.5	110	-0.543	AT2G04030.2	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 2)	CR88	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	40	370	15.8	7	<0.01	55.3	74.5	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2224.04	370.99
[show peptides]	40	298	17.3	7	<0.01	42.9	74.5	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	290	17.6	5	<0.01	28.2	74.5	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2224.04	370.99
[show peptides]	40	237	9.2	6	<0.01	86.1	74.5	110	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2224.04	370.99
[show peptides]	40	202	7.0	4	<0.01	80.0	74.5	110	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	202	7.0	4	<0.01	79.8	74.5	110	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	158	6.9	5	<0.01	103.5	74.5	110	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	40	68	2.3	1	<0.01	52.0	74.5	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	68	2.5	1	<0.01	49.1	74.5	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	68	2.5	1	<0.01	48.5	74.5	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2224.04	370.99
[show peptides]	40	38	1.1	1	<0.01	76.5	74.5	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2224.04	370.99
[show peptides]	41	596	21.5	13	<0.01	56.0	74.3	270	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	422	9.9	6	<0.01	88.7	74.3	270	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 1)	CR88	V) protein folding & processing	plastid	1654.73	372.25
[show peptides]	41	422	9.9	6	<0.01	88.3	74.3	270	-0.543	AT2G04030.2	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein (Gene model 2)	CR88	V) protein folding & processing	plastid	1654.73	372.25
[show peptides]	41	358	12.5	6	<0.01	51.9	74.3	270	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	229	10.8	4	<0.01	39.5	74.3	270	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	161	11.3	3	<0.01	35.4	74.3	270	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	135	7.3	3	<0.01	55.3	74.3	270	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	89	5.1	2	<0.01	38.9	74.3	270	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1654.73	372.25
[show peptides]	41	35	3.8	1	<0.05	42.8	74.3	270	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	41	35	2.8	1	<0.05	68.3	74.3	270	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1654.73	372.25
[show peptides]	41	35	4.7	1	<0.05	34.3	74.3	270	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	41	35	4.3	1	<0.05	37.7	74.3	270	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	41	35	4.3	1	<0.05	37.7	74.3	270	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	1654.73	372.25
[show peptides]	42	235	3.7	4	<0.01	82.5	72.0	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	385.71
[show peptides]	42	102	2.3	2	<0.01	83.2	72.0	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	385.71
[show peptides]	43	195	6.1	5	<0.01	83.2	71.9	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	385.97
[show peptides]	43	101	3.5	2	<0.01	82.5	71.9	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	385.97
[show peptides]	44	1319	38.2	20	<0.01	63.8	64.6	790	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	44	1319	38.2	20	<0.01	63.8	64.6	790	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	44	1254	37.4	19	<0.01	63.3	64.6	790	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	44	340	12.6	5	<0.01	62.1	64.6	790	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	866.61	467.49
[show peptides]	45	425	25.3	8	<0.01	53.0	63.3	340	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1466.02	444.17
[show peptides]	45	284	7.2	6	<0.01	82.5	63.3	340	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1466.02	444.17
[show peptides]	45	263	7.2	6	<0.01	83.2	63.3	340	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1466.02	444.17
[show peptides]	45	239	10.5	4	<0.01	55.3	63.3	340	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1466.02	444.17
[show peptides]	46	1011	31.4	18	<0.01	80.0	70.4	110	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	1011	31.5	18	<0.01	79.8	70.4	110	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	834	28.7	14	<0.01	75.2	70.4	110	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	773	27.8	12	<0.01	55.3	70.4	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	516	17.8	12	<0.01	76.5	70.4	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	431	14.8	10	<0.01	77.0	70.4	110	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	362	19.5	8	<0.01	42.9	70.4	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	298	17.3	7	<0.01	43.0	70.4	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2217.79	395.44
[show peptides]	46	250	11.2	4	<0.01	28.2	70.4	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	212	12.1	4	<0.01	28.6	70.4	110	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	193	10.2	6	<0.01	74.2	70.4	110	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	46	180	5.6	4	<0.01	102.1	70.4	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2217.79	395.44
[show peptides]	46	162	8.8	4	<0.01	53.9	70.4	110	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2217.79	395.44
[show peptides]	46	75	3.3	2	<0.01	61.1	70.4	110	-0.404	AT5G26000.1	TGG1, BGLU38, thioglucoside glucohydrolase 1	glucosinolate metabolism	VI) other metabolic pathways	vacuole	2217.79	395.44
[show peptides]	46	33	1.5	1	<0.05	79.0	70.4	110	-0.081	AT1G79600.1	Protein kinase superfamily protein (AT1G79600.1)	protein modification	V) protein folding & processing	plastid	2217.79	395.44
[show peptides]	47	801	26.8	14	<0.01	55.3	63.1	320	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	614	23.3	10	<0.01	53.9	63.1	320	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	267	5.4	5	<0.01	82.5	63.1	320	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	240	6.7	6	<0.01	83.2	63.1	320	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1514.41	445.53
[show peptides]	47	217	12.5	5	<0.01	53.0	63.1	320	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1514.41	445.53
[show peptides]	48	371	13.1	7	<0.01	80.0	70.0	100	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2279.82	397.95
[show peptides]	48	371	13.1	7	<0.01	79.8	70.0	100	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2279.82	397.95
[show peptides]	48	146	7.9	4	<0.01	76.5	70.0	100	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2279.82	397.95
[show peptides]	49	2310	53.0	34	<0.01	80.0	69.9	89	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	2310	53.1	34	<0.01	79.8	69.9	89	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	899	20.6	15	<0.01	77.0	69.9	89	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2336.13	398.37
[show peptides]	49	849	20.8	15	<0.01	76.5	69.9	89	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2336.13	398.37
[show peptides]	49	69	3.3	1	<0.01	42.8	69.9	89	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	69	4.1	1	<0.01	34.3	69.9	89	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	69	3.7	1	<0.01	37.7	69.9	89	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	69	3.7	1	<0.01	37.7	69.9	89	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	67	2.3	1	<0.01	52.0	69.9	89	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	67	2.5	1	<0.01	49.1	69.9	89	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	49	67	2.5	1	<0.01	48.5	69.9	89	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2336.13	398.37
[show peptides]	50	126	5.7	3	<0.01	76.5	68.9	56	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2520.43	404.74
[show peptides]	51	1724	50.9	28	<0.01	53.0	66.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	479	59.1	9	<0.01	20.3	66.1	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 1)	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	429	48.9	8	<0.01	20.2	66.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	427	48.9	8	<0.01	20.8	66.1	430	-0.172	AT5G38410.3	RbcS, ribulose-bisphosphate carboxylase small chain 1B (Gene model 3)	calvin cycle	II) carbon fixation	plastid	1357.29	423.80
[show peptides]	51	187	4.6	4	<0.01	82.5	66.1	430	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1357.29	423.80
[show peptides]	51	55	1.1	1	<0.01	83.2	66.1	430	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1357.29	423.80
[show peptides]	52	218	3.7	4	<0.01	82.5	64.1	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	52	182	4.4	4	<0.01	83.2	64.1	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	52	44	1.6	1	<0.01	85.2	64.1	1500	0.577	ATCG01010.1	NdhF	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	52	36	1.5	1	<0.05	65.7	64.1	1500	-0.358	AT1G16720.1	HCF173, high chlorophyll fluorescence phenotype 173	g) auxiliary proteins	I) photophosphorylation	plastid	419.62	438.26
[show peptides]	53	2313	56.2	34	<0.01	63.8	60.4	790	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	2313	56.2	34	<0.01	63.8	60.4	790	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	2285	42.7	29	<0.01	62.1	60.4	790	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	2134	54.0	32	<0.01	63.3	60.4	790	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	866.61	481.95
[show peptides]	53	67	3.1	1	<0.01	38.9	60.4	790	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	866.61	481.95
[show peptides]	53	33	1.8	1	<0.05	44.1	60.4	790	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	866.61	481.95
[show peptides]	54	198	3.7	4	<0.01	82.5	63.2	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.56	444.72
[show peptides]	54	82	2.3	2	<0.01	83.2	63.2	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.56	444.72
[show peptides]	55	1504	42.3	24	<0.01	75.2	64.8	110	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	1176	37.0	21	<0.01	74.2	64.8	110	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	1008	31.6	18	<0.01	76.8	64.8	110	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	792	28.0	15	<0.01	65.5	64.8	110	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2222.84	432.57
[show peptides]	55	708	19.7	13	<0.01	73.2	64.8	110	-0.125	AT1G06430.1	FtsH8, FtsH protease 8	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	478	17.3	11	<0.01	76.5	64.8	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	55	184	7.8	3	<0.01	42.9	64.8	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	147	11.2	3	<0.01	28.2	64.8	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2222.84	432.57
[show peptides]	55	117	7.7	3	<0.01	55.3	64.8	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2222.84	432.57
[show peptides]	55	111	7.5	3	<0.01	43.0	64.8	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	86	2.8	2	<0.01	73.8	64.8	110	-0.295	AT5G67030.1	ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP, zeaxanthin epoxidase (ZEP) (ABA1)	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2222.84	432.57
[show peptides]	55	65	2.3	1	<0.01	52.0	64.8	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	65	2.5	1	<0.01	49.1	64.8	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	65	2.5	1	<0.01	48.5	64.8	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2222.84	432.57
[show peptides]	55	59	1.6	1	<0.01	102.1	64.8	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2222.84	432.57
[show peptides]	55	51	1.5	1	<0.01	78.7	64.8	110	-0.244	AT3G05350.1	Metallopeptidase M24 family protein	proteases	V) protein folding & processing	plastid	2222.84	432.57
[show peptides]	56	537	22.7	9	<0.01	38.9	60.1	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	463	23.8	8	<0.01	35.4	60.1	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	419	16.0	7	<0.01	55.3	60.1	260	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	315	11.6	5	<0.01	39.5	60.1	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	218	8.2	4	<0.01	63.3	60.1	260	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	1663.74	469.72
[show peptides]	56	212	10.4	4	<0.01	53.9	60.1	260	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	178	6.9	3	<0.01	56.0	60.1	260	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	163	5.3	3	<0.01	62.1	60.1	260	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	1663.74	469.72
[show peptides]	56	147	5.3	2	<0.01	51.9	60.1	260	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	56	77	5.6	1	<0.01	24.2	60.1	260	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1663.74	469.72
[show peptides]	57	2099	63.5	32	<0.01	53.0	53.5	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29	532.32
[show peptides]	57	52	2.8	1	<0.01	55.3	53.5	430	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1357.29	532.32
[show peptides]	57	45	6.7	1	<0.01	20.2	53.5	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29	532.32
[show peptides]	58	2136	57.4	32	<0.01	67.1	60.9	47	-0.159	AT4G24620.1	PGI1, PGI, phosphoglucose isomerase 1	starch metabolism	VI) other metabolic pathways	plastid	2579.37	463.38
[show peptides]	58	1891	52.3	29	<0.01	63.8	60.9	47	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	1891	52.3	29	<0.01	63.8	60.9	47	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	1671	50.8	27	<0.01	63.3	60.9	47	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	684	20.7	12	<0.01	68.0	60.9	47	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2579.37	463.38
[show peptides]	58	639	24.9	11	<0.01	62.1	60.9	47	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2579.37	463.38
[show peptides]	58	71	3.4	2	<0.01	80.0	60.9	47	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	71	3.4	2	<0.01	79.8	60.9	47	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	52	2.3	1	<0.01	52.0	60.9	47	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	52	2.5	1	<0.01	49.1	60.9	47	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	52	2.5	1	<0.01	48.5	60.9	47	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2579.37	463.38
[show peptides]	58	51	1.8	1	<0.01	65.1	60.9	47	-0.103	AT3G22960.1	PKP1, PKP-ALPHA, Pyruvate kinase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2579.37	463.38
[show peptides]	58	39	1.2	1	<0.01	64.7	60.9	47	-0.401	AT2G38910.1	CPK20, calcium-dependent protein kinase 20	protein modification	V) protein folding & processing	cytosol	2579.37	463.38
[show peptides]	58	36	2.6	1	<0.01	34.6	60.9	47	-0.510	AT5G10880.1	tRNA synthetase-related / tRNA ligase-related	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid new	2579.37	463.38
[show peptides]	58	36	2.6	1	<0.01	55.3	60.9	47	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2579.37	463.38
[show peptides]	59	208	9.4	5	<0.05	80.0	60.7	94	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2310.24	464.87
[show peptides]	59	208	9.5	5	<0.05	79.8	60.7	94	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2310.24	464.87
[show peptides]	60	1122	36.7	19	<0.05	62.1	61.8	82	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	867	28.5	15	<0.05	63.8	61.8	82	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	867	28.5	15	<0.05	63.8	61.8	82	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	763	26.2	13	<0.05	63.3	61.8	82	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	522	15.9	9	<0.05	68.0	61.8	82	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2372.52	455.96
[show peptides]	60	492	6.8	8	<0.05	176.8	61.8	82	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2372.52	455.96
[show peptides]	60	491	6.7	8	<0.05	179.9	61.8	82	-0.148	AT5G04140.2	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2372.52	455.96
[show peptides]	60	414	14.2	9	<0.05	80.0	61.8	82	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	414	14.2	9	<0.05	79.8	61.8	82	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	9.0	3	<0.05	42.8	61.8	82	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 1)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	11.4	3	<0.05	34.3	61.8	82	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	10.3	3	<0.05	37.7	61.8	82	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	114	10.3	3	<0.05	37.7	61.8	82	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	111	5.4	3	<0.05	67.3	61.8	82	-0.215	AT1G70820.1	Phosphoglucomutase, putative / glucose phosphomutase, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2372.52	455.96
[show peptides]	60	72	3.7	2	<0.05	68.3	61.8	82	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2372.52	455.96
[show peptides]	60	70	2.0	1	<0.05	66.8	61.8	82	-0.215	AT2G47940.1	Deg2, DegP2, DegP protease 2 (Gene model 1)	proteases	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	70	2.0	1	<0.05	66.7	61.8	82	-0.209	AT2G47940.2	Deg2, DegP2, DegP protease 2 (Gene model 2)	proteases	V) protein folding & processing	plastid	2372.52	455.96
[show peptides]	60	64	2.3	1	<0.05	52.0	61.8	82	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	64	2.5	1	<0.05	49.1	61.8	82	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	60	64	2.5	1	<0.05	48.5	61.8	82	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2372.52	455.96
[show peptides]	61	2205	48.2	32	<0.01	75.2	61.8	70	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	1641	37.6	25	<0.01	76.8	61.8	70	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	571	20.9	13	<0.01	76.5	61.8	70	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	477	18.6	11	<0.01	73.8	61.8	70	-0.295	AT5G67030.1	ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP, zeaxanthin epoxidase (ZEP) (ABA1)	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2436.51	455.86
[show peptides]	61	444	19.6	11	<0.01	74.2	61.8	70	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	440	16.7	10	<0.01	80.0	61.8	70	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2436.51	455.86
[show peptides]	61	440	16.8	10	<0.01	79.8	61.8	70	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2436.51	455.86
[show peptides]	61	396	16.3	10	<0.01	77.0	61.8	70	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	146	2.6	3	<0.01	80.8	61.8	70	0.615	AT1G15690.1	AVP1, ATAVP3, AVP-3, AtVHP1;1, Pyrophosphate-energized vacuolar membrane proton pump 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	vacuole	2436.51	455.86
[show peptides]	61	118	5.8	3	<0.01	79.0	61.8	70	-0.081	AT1G79600.1	Protein kinase superfamily protein (AT1G79600.1)	protein modification	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	61	106	4.8	2	<0.01	65.5	61.8	70	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2436.51	455.86
[show peptides]	61	76	2.9	2	<0.01	77.5	61.8	70	-0.011	AT1G71810.1	Protein kinase superfamily protein (AT1G71810.1)	protein modification	V) protein folding & processing	plastid	2436.51	455.86
[show peptides]	62	55	1.8	1	<0.01	64.9	60.3	56	-0.101	AT3G23940.1	Dehydratase family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2522.17	468.01
[show peptides]	62	55	1.8	1	<0.01	64.7	60.3	56	-0.107	AT3G23940.2	Dehydratase family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2522.17	468.01
[show peptides]	63	637	27.4	12	<0.01	55.3	56.7	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2223.06	500.06
[show peptides]	63	400	27.3	9	<0.01	53.9	56.7	110	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2223.06	500.06
[show peptides]	63	77	6.7	2	<0.01	28.2	56.7	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2223.06	500.06
[show peptides]	64	1103	35.5	16	<0.01	53.9	58.7	540	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	960	36.1	18	<0.01	53.0	58.7	540	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1155.03	481.95
[show peptides]	64	846	26.6	13	<0.01	55.3	58.7	540	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	282	5.4	5	<0.01	82.5	58.7	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	244	12.2	4	<0.01	38.9	58.7	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	156	7.9	3	<0.01	39.5	58.7	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	120	3.3	3	<0.01	83.2	58.7	540	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	114	4.7	2	<0.01	56.0	58.7	540	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	64	66	3.4	1	<0.01	51.9	58.7	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03	481.95
[show peptides]	65	1923	59.0	26	<0.01	53.9	56.2	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	505.17
[show peptides]	65	1766	41.6	24	<0.01	55.3	56.2	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	505.17
[show peptides]	65	172	6.3	3	<0.01	54.4	56.2	300	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1562.91	505.17
[show peptides]	65	53	1.6	1	<0.01	82.5	56.2	300	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1562.91	505.17
[show peptides]	65	35	2.1	1	<0.05	41.9	56.2	300	0.160	AT2G26360.1	Mitochondrial substrate carrier family protein	other transporters	III) transport	mitochondrion	1562.91	505.17
[show peptides]	66	2209	65.4	35	<0.01	57.4	56.8	160	-0.328	AT4G37930.1	SHM1, STM, SHMT1, serine transhydroxymethyltransferase 1	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2022.96	499.66
[show peptides]	66	1428	37.3	19	<0.01	55.3	56.8	160	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2022.96	499.66
[show peptides]	66	1255	49.4	18	<0.01	53.9	56.8	160	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2022.96	499.66
[show peptides]	66	875	40.0	14	<0.01	54.4	56.8	160	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2022.96	499.66
[show peptides]	66	388	18.1	9	<0.01	58.2	56.8	160	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	171	7.3	3	<0.01	61.2	56.8	160	-0.208	AT5G03940.1	SRP54CP, chloroplast signal recognition particle	protein transporters	III) transport	plastid	2022.96	499.66
[show peptides]	66	158	7.3	3	<0.01	49.5	56.8	160	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2022.96	499.66
[show peptides]	66	144	6.4	3	<0.01	61.7	56.8	160	-0.359	AT5G55220.1	Trigger factor type chaperone family protein	other HSP	V) protein folding & processing	plastid	2022.96	499.66
[show peptides]	66	138	8.7	3	<0.01	60.6	56.8	160	-0.281	AT2G24820.1	TIC55-II, translocon at the inner envelope membrane of chloroplasts 55-II	protein transporters	III) transport	plastid	2022.96	499.66
[show peptides]	66	124	7.3	3	<0.01	53.0	56.8	160	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	51	2.3	1	<0.01	52.0	56.8	160	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	51	1.5	1	<0.01	57.7	56.8	160	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	51	2.5	1	<0.01	49.1	56.8	160	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	51	2.5	1	<0.01	48.5	56.8	160	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2022.96	499.66
[show peptides]	66	49	2.4	1	<0.01	63.8	56.8	160	-0.071	AT3G58610.1	Ketol-acid reductoisomerase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	49	2.4	1	<0.01	63.8	56.8	160	-0.071	AT3G58610.2	Ketol-acid reductoisomerase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	66	49	2.4	1	<0.01	63.8	56.8	160	-0.071	AT3G58610.3	Ketol-acid reductoisomerase (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2022.96	499.66
[show peptides]	67	294	13.6	6	<0.01	53.0	56.7	1700	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	303.56	500.81
[show peptides]	67	79	5.0	2	<0.01	53.9	56.7	1700	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	303.56	500.81
[show peptides]	67	64	2.4	1	<0.01	49.5	56.7	1700	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	303.56	500.81
[show peptides]	68	891	35.3	18	<0.01	53.0	56.5	840	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	827.29	502.17
[show peptides]	68	618	17.3	8	<0.01	63.8	56.5	840	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta (Gene model 1)	Cpn60	V) protein folding & processing	plastid	827.29	502.17
[show peptides]	68	618	17.3	8	<0.01	63.8	56.5	840	-0.112	AT1G55490.2	Cpn60B, LEN1, chaperonin 60 beta (Gene model 2)	Cpn60	V) protein folding & processing	plastid	827.29	502.17
[show peptides]	68	550	18.1	8	<0.01	62.1	56.5	840	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	827.29	502.17
[show peptides]	69	405	16.7	8	<0.01	53.0	56.0	1500	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	419.62	507.30
[show peptides]	69	119	7.5	3	<0.01	55.3	56.0	1500	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	419.62	507.30
[show peptides]	69	64	2.4	1	<0.01	49.5	56.0	1500	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	419.62	507.30
[show peptides]	69	32	1.1	1	<0.05	82.5	56.0	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62	507.30
[show peptides]	70	2153	59.0	27	<0.01	53.9	55.5	540	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	1259	42.2	22	<0.01	53.0	55.5	540	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1155.03	511.79
[show peptides]	70	1044	32.9	15	<0.01	55.3	55.5	540	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	365	12.6	6	<0.01	56.0	55.5	540	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	201	4.6	4	<0.01	82.5	55.5	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	183	6.8	2	<0.01	38.9	55.5	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	180	9.9	3	<0.01	51.9	55.5	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	70	38	1.7	1	<0.05	46.1	55.5	540	-0.216	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1155.03	511.79
[show peptides]	70	36	2.5	1	<0.05	39.5	55.5	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03	511.79
[show peptides]	71	2196	59.0	27	<0.01	53.9	55.7	90	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	967	25.2	16	<0.01	67.1	55.7	90	0.065	AT4G16155.1	Dihydrolipoyl dehydrogenases	antioxidants	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	603	25.0	11	<0.01	55.3	55.7	90	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	546	17.2	9	<0.01	60.8	55.7	90	-0.011	AT3G16950.1	PDH-E3, pyruvate dehydrogenase subunit E3 (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	546	15.7	9	<0.01	66.7	55.7	90	-0.088	AT3G16950.2	PDH-E3, pyruvate dehydrogenase subunit E3 (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	317	14.3	6	<0.01	54.4	55.7	90	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2329.31	510.63
[show peptides]	71	199	16.4	5	<0.01	42.5	55.7	90	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	161	18.0	4	<0.01	34.3	55.7	90	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	161	16.3	4	<0.01	37.7	55.7	90	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	161	16.3	4	<0.01	37.7	55.7	90	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	143	5.0	2	<0.01	61.2	55.7	90	-0.208	AT5G03940.1	SRP54CP, chloroplast signal recognition particle	protein transporters	III) transport	plastid	2329.31	510.63
[show peptides]	71	141	6.7	3	<0.01	49.4	55.7	90	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	126	7.1	3	<0.01	58.2	55.7	90	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2329.31	510.63
[show peptides]	71	125	7.3	3	<0.01	49.5	55.7	90	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2329.31	510.63
[show peptides]	71	81	5.2	2	<0.01	53.0	55.7	90	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	44	4.5	2	<0.01	49.1	55.7	90	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	44	4.5	2	<0.01	48.5	55.7	90	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2329.31	510.63
[show peptides]	71	42	3.8	1	<0.01	28.7	55.7	90	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	71	40	3.0	1	<0.01	28.2	55.7	90	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2329.31	510.63
[show peptides]	72	952	26.6	14	<0.01	49.4	53.7	66	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2464.24	530.50
[show peptides]	72	828	37.8	14	<0.01	53.9	53.7	66	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2464.24	530.50
[show peptides]	72	807	33.9	14	<0.01	54.0	53.7	66	-0.042	AT1G48030.1	mtLPD1, mitochondrial lipoamide dehydrogenase 1 (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2464.24	530.50
[show peptides]	72	807	33.9	14	<0.01	54.0	53.7	66	-0.042	AT1G48030.2	mtLPD1, mitochondrial lipoamide dehydrogenase 1 (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2464.24	530.50
[show peptides]	72	607	26.8	12	<0.01	51.8	53.7	66	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	563	16.0	10	<0.01	52.0	53.7	66	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	563	17.0	10	<0.01	49.1	53.7	66	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	563	17.2	10	<0.01	48.5	53.7	66	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	353	12.7	6	<0.01	58.4	53.7	66	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	353	12.3	6	<0.01	60.8	53.7	66	-0.165	AT5G35360.3	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	257	8.2	4	<0.01	58.6	53.7	66	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	257	8.2	4	<0.01	58.6	53.7	66	-0.262	AT4G23100.3	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	241	8.9	5	<0.01	80.0	53.7	66	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	241	8.9	6	<0.01	79.8	53.7	66	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2464.24	530.50
[show peptides]	72	189	10.3	4	<0.01	56.2	53.7	66	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	189	12.0	4	<0.01	48.1	53.7	66	-0.253	AT4G33510.2	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	170	9.8	4	<0.01	53.3	53.7	66	-0.183	AT1G23310.1	GGT1, AOAT1, GGAT1, glutamate:glyoxylate aminotransferase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	peroxisome	2464.24	530.50
[show peptides]	72	170	10.7	4	<0.01	48.6	53.7	66	-0.159	AT1G23310.2	GGT1, AOAT1, GGAT1, glutamate:glyoxylate aminotransferase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	peroxisome	2464.24	530.50
[show peptides]	72	162	7.1	3	<0.01	55.2	53.7	66	-0.123	AT3G22200.1	POP2, GABA-T, HER1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (Gene model	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	162	7.0	3	<0.01	56.4	53.7	66	-0.127	AT3G22200.2	POP2, GABA-T, HER1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (Gene model	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	132	10.1	4	<0.01	55.3	53.7	66	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2464.24	530.50
[show peptides]	72	114	4.7	4	<0.01	76.5	53.7	66	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2464.24	530.50
[show peptides]	72	108	6.7	2	<0.01	27.8	53.7	66	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	96	6.3	2	<0.01	55.0	53.7	66	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	91	4.8	2	<0.01	57.0	53.7	66	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2464.24	530.50
[show peptides]	72	78	2.2	1	<0.01	54.2	53.7	66	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	64	2.2	1	<0.01	50.3	53.7	66	-0.357	AT1G20010.1	TUB5, tubulin beta-5 chain	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2464.24	530.50
[show peptides]	72	60	3.6	2	<0.01	57.7	53.7	66	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	55	2.5	1	<0.01	44.5	53.7	66	-0.977	AT1G06190.1	Rho termination factor (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2464.24	530.50
[show peptides]	72	55	3.4	1	<0.01	32.6	53.7	66	-0.905	AT1G06190.2	Rho termination factor (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2464.24	530.50
[show peptides]	72	45	2.5	1	<0.01	52.8	53.7	66	-0.322	AT1G32500.1	ATNAP6, NAP6, non-intrinsic ABC protein 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2464.24	530.50
[show peptides]	72	40	3.1	1	<0.01	53.3	53.7	66	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	40	3.1	1	<0.01	53.3	53.7	66	-0.278	AT5G41670.2	6-phosphogluconate dehydrogenase family protein (AT5G41670.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.24	530.50
[show peptides]	72	38	2.0	1	<0.05	61.0	53.7	66	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	37	3.0	1	<0.05	55.1	53.7	66	-0.166	AT5G23010.1	MAM1, IMS3, methylthioalkylmalate synthase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2464.24	530.50
[show peptides]	72	35	1.7	1	<0.05	76.8	53.7	66	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2464.24	530.50
[show peptides]	72	33	2.1	1	<0.05	49.9	53.7	66	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2464.24	530.50
[show peptides]	72	33	2.5	1	<0.05	42.6	53.7	66	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2464.24	530.50
[show peptides]	73	938	38.5	16	<0.01	51.8	53.7	47	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	930	39.5	15	<0.01	52.0	53.7	47	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	930	41.9	15	<0.01	49.1	53.7	47	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	930	42.4	15	<0.01	48.5	53.7	47	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	899	23.6	12	<0.01	49.4	53.7	47	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2582.99	530.77
[show peptides]	73	523	22.2	10	<0.01	58.4	53.7	47	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	523	21.4	10	<0.01	60.8	53.7	47	-0.165	AT5G35360.3	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	403	18.1	8	<0.01	51.6	53.7	47	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2582.99	530.77
[show peptides]	73	335	16.6	7	<0.01	49.8	53.7	47	-0.237	AT2G44640.1	AT2G44640.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2582.99	530.77
[show peptides]	73	325	10.5	6	<0.01	58.6	53.7	47	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	325	10.5	6	<0.01	58.6	53.7	47	-0.262	AT4G23100.3	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	299	14.3	7	<0.01	54.2	53.7	47	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	274	17.3	6	<0.01	53.9	53.7	47	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2582.99	530.77
[show peptides]	73	259	9.5	4	<0.01	56.2	53.7	47	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	215	21.3	5	<0.01	27.6	53.7	47	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	206	14.9	5	<0.01	55.0	53.7	47	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	188	8.6	3	<0.01	53.3	53.7	47	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2582.99	530.77
[show peptides]	73	188	8.6	3	<0.01	53.3	53.7	47	-0.278	AT5G41670.2	6-phosphogluconate dehydrogenase family protein (AT5G41670.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2582.99	530.77
[show peptides]	73	181	12.6	5	<0.01	52.8	53.7	47	-0.322	AT1G32500.1	ATNAP6, NAP6, non-intrinsic ABC protein 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2582.99	530.77
[show peptides]	73	137	10.3	4	<0.01	55.3	53.7	47	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2582.99	530.77
[show peptides]	73	129	4.8	2	<0.01	57.0	53.7	47	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2582.99	530.77
[show peptides]	73	117	3.8	2	<0.01	58.5	53.7	47	-0.090	AT5G57030.1	LUT2, Lycopene beta/epsilon cyclase protein	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	115	3.5	3	<0.01	76.5	53.7	47	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2582.99	530.77
[show peptides]	73	114	5.9	3	<0.01	61.0	53.7	47	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	106	3.8	2	<0.01	59.9	53.7	47	-0.330	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G02150.1)	TPR proteins	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	104	4.8	2	<0.01	49.9	53.7	47	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2582.99	530.77
[show peptides]	73	104	5.7	2	<0.01	42.6	53.7	47	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2582.99	530.77
[show peptides]	73	90	4.4	2	<0.01	56.7	53.7	47	-0.131	AT5G48300.1	ADG1, APS1, ADP glucose pyrophosphorylase 1	starch metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	81	3.6	2	<0.01	57.7	53.7	47	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	78	4.2	2	<0.01	58.0	53.7	47	-0.312	AT4G39980.1	DHS1, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	64	3.1	1	<0.01	54.6	53.7	47	-0.193	AT1G14030.1	Rubisco methyltransferase family protein (AT1G14030.1)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	60	6.7	2	<0.01	44.5	53.7	47	-0.977	AT1G06190.1	Rho termination factor (Gene model 1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2582.99	530.77
[show peptides]	73	60	9.2	2	<0.01	32.6	53.7	47	-0.905	AT1G06190.2	Rho termination factor (Gene model 2)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2582.99	530.77
[show peptides]	73	49	1.8	1	<0.01	57.6	53.7	47	-0.274	AT5G14260.1	Rubisco methyltransferase family protein (AT5G14260.1)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	49	1.8	1	<0.01	57.6	53.7	47	-0.274	AT5G14260.2	Rubisco methyltransferase family protein (AT5G14260.2)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	49	1.8	1	<0.01	57.6	53.7	47	-0.274	AT5G14260.3	Rubisco methyltransferase family protein (AT5G14260.3)	other proteins	II) carbon fixation	plastid	2582.99	530.77
[show peptides]	73	45	2.1	1	<0.01	55.8	53.7	47	-0.020	AT1G48860.1	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	45	2.2	1	<0.01	52.4	53.7	47	0.063	AT1G48860.2	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2582.99	530.77
[show peptides]	73	44	2.2	1	<0.01	50.3	53.7	47	-0.357	AT1G20010.1	TUB5, tubulin beta-5 chain	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2582.99	530.77
[show peptides]	74	1293	42.7	20	<0.01	53.3	53.7	33	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2693.79	530.82
[show peptides]	74	1293	42.7	20	<0.01	53.3	53.7	33	-0.278	AT5G41670.2	6-phosphogluconate dehydrogenase family protein (AT5G41670.2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2693.79	530.82
[show peptides]	74	1106	39.0	16	<0.01	53.4	53.7	33	-0.272	AT1G64190.1	6-phosphogluconate dehydrogenase family protein (AT1G64190.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79	530.82
[show peptides]	74	759	30.4	15	<0.01	51.8	53.7	33	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	725	27.6	13	<0.01	52.0	53.7	33	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	725	29.4	13	<0.01	49.1	53.7	33	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	725	29.7	13	<0.01	48.5	53.7	33	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	641	23.5	11	<0.01	58.4	53.7	33	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	641	22.7	11	<0.01	60.8	53.7	33	-0.165	AT5G35360.3	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	538	19.2	10	<0.01	58.6	53.7	33	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 1)	antioxidants	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	538	19.2	10	<0.01	58.6	53.7	33	-0.262	AT4G23100.3	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase (Gene model 2)	antioxidants	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	354	19.8	9	<0.01	54.2	53.7	33	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	297	12.0	5	<0.01	56.2	53.7	33	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	297	14.1	5	<0.01	48.1	53.7	33	-0.253	AT4G33510.2	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	268	20.0	6	<0.01	28.0	53.7	33	0.283	AT1G44575.1	PsbS, NPQ4 (Gene model 1)	b) photosystem II	I) photophosphorylation	plastid	2693.79	530.82
[show peptides]	74	245	13.8	5	<0.01	55.0	53.7	33	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	240	27.7	6	<0.01	27.6	53.7	33	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	230	11.4	5	<0.01	53.0	53.7	33	-0.114	AT3G57610.1	ADSS, adenylosuccinate synthase	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2693.79	530.82
[show peptides]	74	228	8.9	4	<0.01	57.0	53.7	33	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79	530.82
[show peptides]	74	177	8.6	4	<0.01	57.7	53.7	33	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	149	7.5	3	<0.01	55.3	53.7	33	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2693.79	530.82
[show peptides]	74	131	5.8	3	<0.01	49.8	53.7	33	-0.237	AT2G44640.1	AT2G44640.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2693.79	530.82
[show peptides]	74	123	3.8	2	<0.01	58.5	53.7	33	-0.090	AT5G57030.1	LUT2, Lycopene beta/epsilon cyclase protein	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	115	7.4	3	<0.01	51.6	53.7	33	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2693.79	530.82
[show peptides]	74	96	3.3	2	<0.01	57.6	53.7	33	-0.274	AT5G14260.1	Rubisco methyltransferase family protein (AT5G14260.1)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	96	3.3	2	<0.01	57.6	53.7	33	-0.274	AT5G14260.2	Rubisco methyltransferase family protein (AT5G14260.2)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	96	3.3	2	<0.01	57.6	53.7	33	-0.274	AT5G14260.3	Rubisco methyltransferase family protein (AT5G14260.3)	other proteins	II) carbon fixation	plastid	2693.79	530.82
[show peptides]	74	72	6.7	2	<0.01	28.2	53.7	33	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2693.79	530.82
[show peptides]	74	42	3.0	1	<0.05	55.1	53.7	33	-0.166	AT5G23010.1	MAM1, IMS3, methylthioalkylmalate synthase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	39	1.8	1	<0.05	61.0	53.7	33	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79	530.82
[show peptides]	74	36	2.9	1	<0.05	54.7	53.7	33	-0.409	AT4G32770.1	VTE1, ATSDX1, tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defect	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79	530.82
[show peptides]	75	2781	74.5	31	<0.01	53.9	53.1	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	536.92
[show peptides]	75	1446	36.5	19	<0.01	55.3	53.1	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.91	536.92
[show peptides]	75	76	3.5	2	<0.01	59.8	53.1	300	-0.150	AT4G18440.1	L-Aspartase-like family protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1562.91	536.92
[show peptides]	75	32	5.5	1	<0.05	16.8	53.1	300	-0.897	AT3G62420.1	Leucine zipper motif 53	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	1562.91	536.92
[show peptides]	76	526	23.1	10	<0.01	51.6	50.9	110	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2217.56	562.01
[show peptides]	76	415	17.9	8	<0.01	52.0	50.9	110	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2217.56	562.01
[show peptides]	76	415	19.1	8	<0.01	49.1	50.9	110	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	2217.56	562.01
[show peptides]	76	415	19.3	8	<0.01	48.5	50.9	110	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	2217.56	562.01
[show peptides]	76	88	10.9	2	<0.01	27.5	50.9	110	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2217.56	562.01
[show peptides]	77	882	29.1	18	<0.01	51.0	51.2	1700	-0.238	AT1G15980.1	PnsB1	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.56	558.45
[show peptides]	77	213	5.5	3	<0.01	51.6	51.2	1700	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	303.56	558.45
[show peptides]	77	35	1.7	1	<0.05	55.6	51.2	1700	-0.345	AT4G20130.1	pTAC14, plastid transcriptionally active 14	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.56	558.45
[show peptides]	78	754	25.8	15	<0.01	56.0	46.6	1000	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	725.81	616.45
[show peptides]	78	265	9.9	4	<0.01	51.9	46.6	1000	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	725.81	616.45
[show peptides]	78	37	3.3	1	<0.05	47.4	46.6	1000	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	725.81	616.45
[show peptides]	78	37	3.3	1	<0.05	47.4	46.6	1000	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	725.81	616.45
[show peptides]	78	37	3.3	1	<0.05	47.4	46.6	1000	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	725.81	616.45
[show peptides]	79	639	19.1	13	<0.01	56.0	46.8	830	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	829.77	613.25
[show peptides]	79	285	9.9	4	<0.01	51.9	46.8	830	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	829.77	613.25
[show peptides]	79	124	3.6	2	<0.01	62.1	46.8	830	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	829.77	613.25
[show peptides]	79	77	5.1	2	<0.01	47.4	46.8	830	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	829.77	613.25
[show peptides]	79	77	5.1	2	<0.01	47.4	46.8	830	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	829.77	613.25
[show peptides]	79	77	5.1	2	<0.01	47.4	46.8	830	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	829.77	613.25
[show peptides]	79	45	1.9	1	<0.01	52.0	46.8	830	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	829.77	613.25
[show peptides]	79	45	2.0	1	<0.01	49.1	46.8	830	-0.334	AT2G39730.2	RCA, rubisco activase (Gene model 2)	other proteins	II) carbon fixation	plastid	829.77	613.25
[show peptides]	79	45	2.0	1	<0.01	48.5	46.8	830	-0.289	AT2G39730.3	RCA, rubisco activase (Gene model 3)	other proteins	II) carbon fixation	plastid	829.77	613.25
[show peptides]	80	455	18.2	10	<0.01	51.0	51.3	1500	-0.238	AT1G15980.1	PnsB1	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62	556.82
[show peptides]	80	43	2.9	1	<0.05	51.6	51.3	1500	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	419.62	556.82
[show peptides]	81	976	27.0	20	<0.01	56.0	46.8	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	373	11.0	6	<0.01	51.9	46.8	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	195	10.8	4	<0.01	39.5	46.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	180	10.1	4	<0.01	55.3	46.8	560	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	138	8.2	3	<0.01	53.9	46.8	560	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	103	2.7	2	<0.01	82.5	46.8	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	87	5.1	2	<0.01	38.9	46.8	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	81	48	3.3	1	<0.01	47.4	46.8	560	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1106.40	614.22
[show peptides]	81	48	3.3	1	<0.05	47.4	46.8	560	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	1106.40	614.22
[show peptides]	81	48	3.3	1	<0.05	47.4	46.8	560	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	1106.40	614.22
[show peptides]	81	39	3.2	1	<0.01	28.0	46.8	560	-0.169	AT5G36970.1	NHL25, NDR1/HIN1-like 25	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1106.40	614.22
[show peptides]	81	35	1.3	1	<0.05	83.2	46.8	560	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1106.40	614.22
[show peptides]	82	2069	62.9	28	<0.01	52.0	50.3	74	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	1424	41.8	19	<0.01	51.6	50.3	74	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2415.33	569.18
[show peptides]	82	615	26.4	10	<0.01	50.1	50.3	74	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	535	21.1	8	<0.01	49.9	50.3	74	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2415.33	569.18
[show peptides]	82	535	24.9	8	<0.01	42.6	50.3	74	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2415.33	569.18
[show peptides]	82	389	19.2	8	<0.01	51.5	50.3	74	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	264	12.3	6	<0.01	80.0	50.3	74	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	264	12.3	6	<0.01	79.8	50.3	74	-0.234	AT3G60750.2	Transketolase (AT3G60750.2)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	236	10.3	4	<0.01	52.0	50.3	74	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2415.33	569.18
[show peptides]	82	236	9.9	4	<0.01	54.2	50.3	74	-0.089	AT5G62790.2	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2415.33	569.18
[show peptides]	82	134	7.2	3	<0.01	47.4	50.3	74	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	134	7.2	3	<0.01	47.4	50.3	74	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	134	7.2	3	<0.01	47.4	50.3	74	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	115	5.3	2	<0.01	42.5	50.3	74	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	110	4.2	3	<0.01	64.8	50.3	74	0.470	AT3G26570.1	PHT2;1, ORF02, phosphate transporter 2;1 (Gene model 1)	other transporters	III) transport	plastid	2415.33	569.18
[show peptides]	82	110	4.4	3	<0.01	61.4	50.3	74	0.542	AT3G26570.2	PHT2;1, ORF02, phosphate transporter 2;1 (Gene model 2)	other transporters	III) transport	plastid	2415.33	569.18
[show peptides]	82	93	5.7	2	<0.01	50.7	50.3	74	-0.350	AT1G02910.1	LPA1, tetratricopeptide repeat (TPR)-containing protein	g) auxiliary proteins	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	82	75	3.4	1	<0.01	51.9	50.3	74	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	82	70	5.7	2	<0.01	50.4	50.3	74	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	70	6.5	2	<0.01	44.7	50.3	74	-0.216	AT5G46290.2	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	70	5.5	2	<0.01	52.1	50.3	74	-0.146	AT5G46290.3	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	68	2.7	1	<0.01	53.1	50.3	74	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	67	4.1	1	<0.01	34.3	50.3	74	0.142	AT1G12900.2	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 2)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	67	3.7	1	<0.01	37.7	50.3	74	-0.061	AT1G12900.3	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 3)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	67	3.7	1	<0.01	37.7	50.3	74	-0.061	AT1G12900.4	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (Gene model 4)	calvin cycle	II) carbon fixation	plastid	2415.33	569.18
[show peptides]	82	62	3.5	1	<0.01	48.2	50.3	74	-0.290	AT5G28500.1	AT5G28500.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2415.33	569.18
[show peptides]	82	62	5.6	1	<0.01	29.7	50.3	74	-0.383	AT5G28500.2	AT5G28500.2	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2415.33	569.18
[show peptides]	82	52	2.4	1	<0.01	53.8	50.3	74	-0.198	AT4G24830.1	Arginosuccinate synthase family (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	52	2.7	1	<0.01	49.0	50.3	74	-0.234	AT4G24830.2	Arginosuccinate synthase family (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2415.33	569.18
[show peptides]	82	51	2.2	1	<0.01	56.0	50.3	74	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	82	46	3.0	1	<0.01	28.2	50.3	74	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2415.33	569.18
[show peptides]	83	2245	63.1	32	<0.01	52.0	50.1	50	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2562.91	570.64
[show peptides]	83	1184	40.1	19	<0.01	51.6	50.1	50	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2562.91	570.64
[show peptides]	83	655	28.7	11	<0.01	50.1	50.1	50	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2562.91	570.64
[show peptides]	83	526	21.1	8	<0.01	49.9	50.1	50	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2562.91	570.64
[show peptides]	83	526	24.9	8	<0.01	42.6	50.1	50	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2562.91	570.64
[show peptides]	83	420	17.7	7	<0.01	49.0	50.1	50	-0.010	AT5G63890.1	AtHDH, HISN8, HDH, histidinol dehydrogenase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	420	17.2	7	<0.01	50.3	50.1	50	-0.006	AT5G63890.2	AtHDH, HISN8, HDH, histidinol dehydrogenase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	384	15.7	7	<0.01	52.0	50.1	50	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	384	15.1	7	<0.01	54.2	50.1	50	-0.089	AT5G62790.2	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	356	17.2	7	<0.01	53.1	50.1	50	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	325	11.2	6	<0.01	51.5	50.1	50	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	115	7.2	3	<0.01	50.4	50.1	50	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 1)	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	115	8.1	3	<0.01	44.7	50.1	50	-0.216	AT5G46290.2	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 2)	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	115	7.0	3	<0.01	52.1	50.1	50	-0.146	AT5G46290.3	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I (Gene model 3)	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	92	6.7	2	<0.01	50.4	50.1	50	-0.159	AT4G33680.1	AGD2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	83	89	5.7	2	<0.01	50.7	50.1	50	-0.350	AT1G02910.1	LPA1, tetratricopeptide repeat (TPR)-containing protein	g) auxiliary proteins	I) photophosphorylation	plastid	2562.91	570.64
[show peptides]	83	63	2.7	1	<0.01	54.2	50.1	50	-0.215	AT5G14590.1	Isocitrate/isopropylmalate dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91	570.64
[show peptides]	83	53	2.5	1	<0.01	51.6	50.1	50	-0.226	AT4G27070.1	TSB2, tryptophan synthase beta-subunit 2	amino acid metabolism	VI) other metabolic pathways	plastid	2562.91	570.64
[show peptides]	84	1857	57.6	26	<0.01	52.0	49.9	24	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2781.61	573.61
[show peptides]	84	891	38.0	17	<0.01	51.6	49.9	24	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	702	26.6	10	<0.01	50.4	49.9	24	0.011	AT5G63570.1	GSA1, glutamate-1-semialdehyde-2,1-aminomutase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	669	26.0	11	<0.01	50.1	49.9	24	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2781.61	573.61
[show peptides]	84	662	22.7	9	<0.01	50.1	49.9	24	-0.001	AT3G48730.1	GSA2, glutamate-1-semialdehyde 2,1-aminomutase 2	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	610	25.2	11	<0.01	52.3	49.9	24	0.006	AT3G09580.1	FAD/NAD(P)-binding oxidoreductase family protein (AT3G09580.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	512	18.4	7	<0.01	49.9	49.9	24	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Gene model 1)	calvin cycle	II) carbon fixation	plastid new	2781.61	573.61
[show peptides]	84	512	21.7	7	<0.01	42.6	49.9	24	0.172	AT1G56190.2	Phosphoglycerate kinase family protein (Gene model 2)	calvin cycle	II) carbon fixation	plastid new	2781.61	573.61
[show peptides]	84	331	17.5	7	<0.01	52.5	49.9	24	-0.095	AT1G63940.1	MDAR6, monodehydroascorbate reductase 6 (Gene model 1)	antioxidants	VI) other metabolic pathways	mitochondrion	2781.61	573.61
[show peptides]	84	331	17.2	7	<0.01	53.3	49.9	24	-0.089	AT1G63940.2	MDAR6, monodehydroascorbate reductase 6 (Gene model 2)	antioxidants	VI) other metabolic pathways	mitochondrion	2781.61	573.61
[show peptides]	84	331	17.6	7	<0.01	52.1	49.9	24	-0.095	AT1G63940.4	MDAR6, monodehydroascorbate reductase 6 (Gene model 4)	antioxidants	VI) other metabolic pathways	mitochondrion	2781.61	573.61
[show peptides]	84	277	17.3	8	<0.01	51.5	49.9	24	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	272	10.5	5	<0.01	47.4	49.9	24	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	272	10.5	5	<0.01	47.4	49.9	24	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	272	10.5	5	<0.01	47.4	49.9	24	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	130	6.0	3	<0.01	50.5	49.9	24	0.006	AT1G08490.1	ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS, chloroplastic NIFS-like cysteine desulfurase	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	112	4.7	2	<0.01	50.9	49.9	24	-0.205	AT5G54810.1	TSB1, TRPB, TRP2, ATTSB1, tryptophan synthase beta-subunit 1	amino acid metabolism	VI) other metabolic pathways	plastid	2781.61	573.61
[show peptides]	84	110	5.1	2	<0.01	46.6	49.9	24	-0.057	AT1G50450.1	Saccharopine dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	86	5.2	2	<0.01	52.0	49.9	24	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	86	5.0	2	<0.01	54.2	49.9	24	-0.089	AT5G62790.2	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	78	3.3	1	<0.01	50.7	49.9	24	-0.091	AT2G36250.1	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein (Gene model 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	78	3.3	1	<0.01	50.7	49.9	24	-0.091	AT2G36250.2	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein (Gene model 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.61	573.61
[show peptides]	84	65	3.1	1	<0.01	51.0	49.9	24	-0.365	AT5G36170.1	HCF109, ATPRFB, high chlorophyll fluorescent 109 (Gene model 1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	65	3.1	1	<0.01	50.9	49.9	24	-0.375	AT5G36170.2	HCF109, ATPRFB, high chlorophyll fluorescent 109 (Gene model 2)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	65	3.6	1	<0.01	43.2	49.9	24	-0.422	AT5G36170.3	HCF109, ATPRFB, high chlorophyll fluorescent 109 (Gene model 3)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.61	573.61
[show peptides]	84	38	3.9	1	<0.01	27.5	49.9	24	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2781.61	573.61
[show peptides]	85	625	22.0	14	<0.01	56.0	46.6	700	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	951.79	615.85
[show peptides]	85	218	8.2	3	<0.01	51.9	46.6	700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	951.79	615.85
[show peptides]	85	207	8.4	5	<0.01	47.4	46.6	700	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	951.79	615.85
[show peptides]	85	207	8.4	5	<0.01	47.4	46.6	700	-0.413	AT5G35630.2	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 2)	amino acid metabolism	VI) other metabolic pathways	plastid	951.79	615.85
[show peptides]	85	207	8.4	5	<0.01	47.4	46.6	700	-0.413	AT5G35630.3	GS2, GLN2, ATGSL1, glutamine synthetase 2 (Gene model 3)	amino acid metabolism	VI) other metabolic pathways	plastid	951.79	615.85
[show peptides]	85	33	1.5	1	<0.05	64.5	46.6	700	-0.776	AT5G17430.1	BBM, Integrase-type DNA-binding superfamily protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	951.79	615.85
[show peptides]	86	1169	39.9	21	<0.01	51.6	50.3	190	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1888.91	569.28
[show peptides]	86	963	39.2	16	<0.01	52.0	50.3	190	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	1888.91	569.28
[show peptides]	86	343	10.9	6	<0.01	53.8	50.3	190	-0.198	AT4G24830.1	Arginosuccinate synthase family (Gene model 1)	amino acid metabolism	VI) other metabolic pathways	plastid	1888.91	569.28
[show peptides]	86	333	14.2	7	<0.01	59.9	50.3	190	0.131	AT3G01120.1	MTO1, CGS, ATCYS1, CGS1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	sulfur metabolism	VI) other metabolic pathways	plastid	1888.91	569.28
[show peptides]	86	283	16.8	7	<0.01	50.1	50.3	190	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1888.91	569.28
[show peptides]	86	153	5.5	3	<0.01	56.0	50.3	190	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1888.91	569.28
[show peptides]	86	51	2.8	1	<0.01	51.8	50.3	190	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1888.91	569.28
[show peptides]	87	1337	43.0	22	<0.01	52.0	50.3	150	-0.308	AT2G39730.1	RCA, rubisco activase (Gene model 1)	other proteins	II) carbon fixation	plastid	2070.64	568.47
[show peptides]	87	1277	42.0	21	<0.01	51.6	50.3	150	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2070.64	568.47
[show peptides]	87	464	19.3	8	<0.01	50.1	50.3	150	0.176