Gelmap. Spot visualization by LUH

Proteinlist

-	ID	Mascot score	SC [%]	Unique peptides	Calculated mass[kDa]	Apparent mass 2D[kDa]	Apparent mass 1D[kDa]	GRAVY score	Accession	Name	Protein complex/Metabolic pathway	Physiological function	Subcellular localisation	X	Y
[show peptides]	001	1652	46.4	33	65.5	62.9	16	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2895.85226	447.52105
[show peptides]	001	34	1.6	1	56.8	62.9	16	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2895.85226	447.52105
[show peptides]	001	33	1.9	1	46.7	62.9	16	0.036	AT5G47950.1	HXXXD-type acyl-transferase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2895.85226	447.52105
[show peptides]	002	805	27.6	17	65.5	62.3	12	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2970.97387	452.16222
[show peptides]	002	35	1.6	1	56.8	62.3	12	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2970.97387	452.16222
[show peptides]	003	60	8.8	1	13.0	2.1	260	0.234	AT2G26500.1	PetM, putative	c) cytochrome b6f complex	I) photophosphorylation	plastid	1666.10022	2523.48646
[show peptides]	004	1654	31.2	34	120.9	88.1	39	-0.321	AT3G19170.1	PreP1, presequence protease, AtPreP1, ATZNMP	proteases	V) protein folding & processing	plastid	2640.00172	307.71967
[show peptides]	004	45	1.9	1	46.7	88.1	39	0.036	AT5G47950.1	HXXXD-type acyl-transferase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2640.00172	307.71967
[show peptides]	004	40	1.6	1	79.9	88.1	39	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2640.00172	307.71967
[show peptides]	004	32	1.6	1	56.8	88.1	39	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2640.00172	307.71967
[show peptides]	005	2576	57.3	55	100.5	82.3	46	-0.261	AT1G63770	Peptidase M1 family protein	proteases	V) protein folding & processing	cytosol	2589.92527	332.30343
[show peptides]	005	1367	34.8	28	102.0	82.3	46	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2589.92527	332.30343
[show peptides]	005	253	7.5	7	108.1	82.3	46	-0.179	AT2G05710.1	ACO3, aconitase 3	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2589.92527	332.30343
[show peptides]	005	43	1.6	1	79.9	82.3	46	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2589.92527	332.30343
[show peptides]	005	40	1.6	1	56.8	82.3	46	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2589.92527	332.30343
[show peptides]	006	41	1.6	1	56.8	79.8	51	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2553.77224	343.69742
[show peptides]	007	2472	51.0	53	82.2	70.0	22	-0.204	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2804.17564	397.94238
[show peptides]	007	1532	42.4	28	79.9	70.0	22	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2804.17564	397.94238
[show peptides]	007	480	15.3	12	88.7	70.0	22	-0.360	AT5G65620.1	Zincin-like metalloproteases family protein (AT5G65620.1)	proteases	V) protein folding & processing	plastid	2804.17564	397.94238
[show peptides]	007	357	12.5	7	81.3	70.0	22	-0.330	AT5G36210.1	Alpha/beta-Hydrolases superfamily protein (AT5G36210.1)	proteases	V) protein folding & processing	plastid	2804.17564	397.94238
[show peptides]	007	125	6.4	4	86.3	70.0	22	-0.466	AT4G09020.1	ATISA3, ISA3, isoamylase 3	starch metabolism	VI) other metabolic pathways	plastid	2804.17564	397.94238
[show peptides]	007	41	1.6	1	56.8	70.0	22	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2804.17564	397.94238
[show peptides]	008	2078	45.1	44	82.2	69.4	29	-0.204	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2731.88549	401.5972
[show peptides]	008	1816	42.9	35	79.9	69.4	29	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2731.88549	401.5972
[show peptides]	008	434	14.9	12	88.7	69.4	29	-0.360	AT5G65620.1	Zincin-like metalloproteases family protein (AT5G65620.1)	proteases	V) protein folding & processing	plastid	2731.88549	401.5972
[show peptides]	008	326	12.0	8	79.0	69.4	29	-0.366	AT5G10540.1	Zincin-like metalloproteases family protein (AT5G10540.1)	proteases	V) protein folding & processing	cytosol	2731.88549	401.5972
[show peptides]	009	42	1.6	1	56.8	82.1	73	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2421.69286	332.95604
[show peptides]	010	36	1.6	1	56.8	82.5	64	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2470.56287	331.21827
[show peptides]	010	32	1.9	1	46.7	82.5	64	0.036	AT5G47950.1	HXXXD-type acyl-transferase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2470.56287	331.21827
[show peptides]	011	90	14.4	2	14.5	15.7	12	-0.035	ATCG00470.1	F1 part, epsilon subunit (AtpE)	d) atp-synthase	I) photophosphorylation	plastid	2968.37009	1527.74144
[show peptides]	011	64	6.2	1	23.8	15.7	12	-0.089	AT2G44920.2	Tetratricopeptide repeat (TPR)-like superfamily protein (AT2G44920.2)	TPR proteins	VI) other metabolic pathways	plastid	2968.37009	1527.74144
[show peptides]	011	58	4.4	1	20.2	15.7	12	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	2968.37009	1527.74144
[show peptides]	012	271	15.9	6	17.7	12.6	18	0.201	AT4G01150.1	AT4G01150.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2861.43474	1713.97723
[show peptides]	012	149	23.6	3	18.5	12.6	18	0.070	AT2G46820.1	PsaP, pTAC8, TMP14	a) photosystem I	I) photophosphorylation	plastid	2861.43474	1713.97723
[show peptides]	012	68	13.0	1	7.3	12.6	18	-0.158	AT3G63160.1	AT3G63160.1	proteins of unknown functions	VIII) proteins of unknown functions	plasma membrane	2861.43474	1713.97723
[show peptides]	012	42	1.6	1	56.8	12.6	18	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2861.43474	1713.97723
[show peptides]	013	183	10.4	4	17.7	12.0	12	0.201	AT4G01150.1	AT4G01150.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2976.846	1751.88384
[show peptides]	013	137	24.7	3	18.5	12.0	12	0.070	AT2G46820.1	PsaP, pTAC8, TMP14	a) photosystem I	I) photophosphorylation	plastid	2976.846	1751.88384
[show peptides]	013	52	13.0	1	7.3	12.0	12	-0.158	AT3G63160.1	AT3G63160.1	proteins of unknown functions	VIII) proteins of unknown functions	plasma membrane	2976.846	1751.88384
[show peptides]	013	51	1.6	1	56.8	12.0	12	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2976.846	1751.88384
[show peptides]	014	845	41.0	16	44.4	11.0	40	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2637.32149	1819.80473
[show peptides]	014	703	28.4	15	47.6	11.0	40	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2637.32149	1819.80473
[show peptides]	014	261	8.7	4	55.3	11.0	40	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2637.32149	1819.80473
[show peptides]	014	220	11.2	4	28.2	11.0	40	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2637.32149	1819.80473
[show peptides]	014	199	10.9	4	47.3	11.0	40	-0.229	AT4G35630.1	PSAT, phosphoserine aminotransferase	amino acid metabolism	VI) other metabolic pathways	plastid	2637.32149	1819.80473
[show peptides]	014	159	12.3	5	40.3	11.0	40	-0.074	AT3G14420.1	Aldolase-type TIM barrel family protein (AT3G14420.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2637.32149	1819.80473
[show peptides]	014	148	5.7	3	51.9	11.0	40	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2637.32149	1819.80473
[show peptides]	014	129	6.9	4	79.9	11.0	40	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2637.32149	1819.80473
[show peptides]	014	113	7.9	3	45.9	11.0	40	-0.102	AT5G18660.1	PCB2, NAD(P)-binding Rossmann-fold superfamily protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2637.32149	1819.80473
[show peptides]	014	111	15.7	3	14.6	11.0	40	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2637.32149	1819.80473
[show peptides]	014	93	7.8	3	43.0	11.0	40	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2637.32149	1819.80473
[show peptides]	014	81	5.8	1	18.4	11.0	40	-0.160	AT5G64040.1	PsaN, putative	a) photosystem I	I) photophosphorylation	plastid	2637.32149	1819.80473
[show peptides]	014	67	2.8	2	76.7	11.0	40	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2637.32149	1819.80473
[show peptides]	014	64	5.5	2	45.7	11.0	40	-0.532	AT2G43710.1	SSI2, FAB2, Plant stearoyl-acyl-carrier-protein desaturase family protein	fatty acid metabolism	VI) other metabolic pathways	plastid	2637.32149	1819.80473
[show peptides]	014	58	2.3	1	46.1	11.0	40	-0.284	AT1G77490.1	TAPX, thylakoidal ascorbate peroxidase	antioxidants	VI) other metabolic pathways	plastid	2637.32149	1819.80473
[show peptides]	014	56	11.5	2	15.0	11.0	40	0.086	AT2G44650.1	Chl-Cpn10, Cpn10, chloroplast chaperonin 10	Cpn10	V) protein folding & processing	plastid	2637.32149	1819.80473
[show peptides]	014	44	5.6	2	58.2	11.0	40	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2637.32149	1819.80473
[show peptides]	014	37	1.6	1	56.8	11.0	40	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2637.32149	1819.80473
[show peptides]	014	36	0.7	1	118.7	11.0	40	0.062	AT3G21180.1	ACA9, ATACA9, autoinhibited Ca(2+)-ATPase 9	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2637.32149	1819.80473
[show peptides]	015	97	15.7	3	14.6	10.9	21	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2823.35918	1825.09675
[show peptides]	015	79	5.8	1	18.4	10.9	21	-0.160	AT5G64040.1	PsaN, putative	a) photosystem I	I) photophosphorylation	plastid	2823.35918	1825.09675
[show peptides]	015	35	5.1	1	16.9	10.9	21	0.206	AT1G52220.1	AT1G52220.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2823.35918	1825.09675
[show peptides]	016	97	5.8	1	18.4	10.9	26	-0.160	AT5G64040.1	PsaN, putative	a) photosystem I	I) photophosphorylation	plastid	2758.31243	1822.3608
[show peptides]	016	82	15.7	3	14.6	10.9	26	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	2758.31243	1822.3608
[show peptides]	017	89	5.8	1	18.4	10.2	11	-0.160	AT5G64040.1	PsaN, putative	a) photosystem I	I) photophosphorylation	plastid	2981.67232	1873.88741
[show peptides]	018	1441	43.2	27	52.9	104.3	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	254.2316
[show peptides]	018	189	26.7	5	20.2	104.3	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	254.2316
[show peptides]	018	178	22.1	4	20.3	104.3	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	1357.29361	254.2316
[show peptides]	019	1225	29.7	24	102.0	86.3	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.7034	314.93675
[show peptides]	019	937	18.5	17	112.1	86.3	170	-0.301	AT1G06950.1	Tic110, ATTIC110, translocon at the inner envelope membrane of chloroplasts 110	protein transporters	III) transport	plastid	1988.7034	314.93675
[show peptides]	019	576	13.8	12	115.1	86.3	170	-0.391	AT4G01800.1	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1	protein transporters	III) transport	plastid	1988.7034	314.93675
[show peptides]	019	573	13.3	12	114.3	86.3	170	-0.215	AT1G56500.1	Haloacid dehalogenase-like hydrolase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.7034	314.93675
[show peptides]	019	464	13.6	11	103.4	86.3	170	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1988.7034	314.93675
[show peptides]	019	207	8.2	7	120.9	86.3	170	-0.321	AT3G19170.1	PreP1, presequence protease, AtPreP1, ATZNMP	proteases	V) protein folding & processing	plastid	1988.7034	314.93675
[show peptides]	019	55	2.7	2	68.3	86.3	170	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.7034	314.93675
[show peptides]	019	35	2.3	1	51.9	86.3	170	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1988.7034	314.93675
[show peptides]	020	39	1.6	1	56.8	93.0	1700	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	303.55873	289.69027
[show peptides]	021	1317	45.1	28	52.9	97.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	275.70528
[show peptides]	021	68	4.4	1	20.2	97.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	275.70528
[show peptides]	022	704	19.2	14	79.9	69.6	69	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2442.77154	400.22037
[show peptides]	022	223	8.8	6	76.5	69.6	69	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2442.77154	400.22037
[show peptides]	022	34	1.6	1	56.8	69.6	69	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2442.77154	400.22037
[show peptides]	023	105	2.7	2	82.4	94.2	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62125	285.39111
[show peptides]	023	77	1.9	2	121.0	94.2	1500	-0.260	ATCG00190.1	RpoB, RNA polymerase subunit beta	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62125	285.39111
[show peptides]	023	54	1.1	1	85.2	94.2	1500	0.577	ATCG01010.1	NdhF	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	285.39111
[show peptides]	023	51	0.9	1	83.2	94.2	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62125	285.39111
[show peptides]	023	45	1.2	1	102.9	94.2	1500	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62125	285.39111
[show peptides]	023	45	1.6	1	56.8	94.2	1500	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	419.62125	285.39111
[show peptides]	024	525	13.9	12	83.2	76.3	560	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1106.40251	361.25687
[show peptides]	024	499	11.3	9	82.4	76.3	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40251	361.25687
[show peptides]	024	288	11.1	5	52.9	76.3	560	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1106.40251	361.25687
[show peptides]	024	227	10.8	4	39.5	76.3	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	361.25687
[show peptides]	024	186	8.2	3	51.8	76.3	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40251	361.25687
[show peptides]	024	171	6.8	2	38.9	76.3	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	361.25687
[show peptides]	024	149	6.9	3	56.0	76.3	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40251	361.25687
[show peptides]	024	52	2.4	1	55.3	76.3	560	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1106.40251	361.25687
[show peptides]	024	41	1.7	1	46.1	76.3	560	-0.216	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1106.40251	361.25687
[show peptides]	025	2144	51.0	44	102.0	81.6	140	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2089.27864	335.26064
[show peptides]	025	1222	33.3	28	103.4	81.6	140	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2089.27864	335.26064
[show peptides]	025	160	6.5	6	108.9	81.6	140	-0.447	AT5G15450.1	APG6, ClpB3, ClpB-P, casein lytic proteinase B3	other HSP	V) protein folding & processing	plastid	2089.27864	335.26064
[show peptides]	025	70	2.7	2	108.5	81.6	140	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2089.27864	335.26064
[show peptides]	025	57	2.5	2	95.1	81.6	140	-0.381	AT3G46970.1	ATPHS2, PHS2, alpha-glucan phosphorylase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2089.27864	335.26064
[show peptides]	026	136	3.5	3	82.4	88.8	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.55873	305.21123
[show peptides]	026	73	2.3	2	83.2	88.8	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.55873	305.21123
[show peptides]	026	66	1.2	1	102.9	88.8	1700	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.55873	305.21123
[show peptides]	026	48	0.9	1	115.0	88.8	1700	-0.341	AT1G79560.1	FtsH12, FtsH protease 12, EMB156, EMB36, EMB1047	proteases	V) protein folding & processing	plastid	303.55873	305.21123
[show peptides]	027	1164	39.2	24	52.9	86.2	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	315.47615
[show peptides]	027	197	10.5	4	47.4	86.2	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29361	315.47615
[show peptides]	027	98	8.9	2	20.2	86.2	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	315.47615
[show peptides]	027	90	8.8	2	20.3	86.2	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	1357.29361	315.47615
[show peptides]	027	49	1.8	1	115.1	86.2	430	-0.391	AT4G01800.1	SecA-1, AtcpSecA, AGY1, Albino or Glassy Yellow 1	protein transporters	III) transport	plastid	1357.29361	315.47615
[show peptides]	027	48	1.0	1	56.7	86.2	430	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	1357.29361	315.47615
[show peptides]	028	80	1.2	1	102.9	89.2	1500	-0.507	AT3G04260.1	pTAC3, plastid transcriptionally active 3	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62125	303.40615
[show peptides]	028	43	0.9	1	115.0	89.2	1500	-0.341	AT1G79560.1	FtsH12, FtsH protease 12, EMB156, EMB36, EMB1047	proteases	V) protein folding & processing	plastid	419.62125	303.40615
[show peptides]	028	36	0.9	1	83.2	89.2	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62125	303.40615
[show peptides]	029	114	3.5	3	82.4	82.5	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.55873	331.24691
[show peptides]	029	75	2.3	2	83.2	82.5	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.55873	331.24691
[show peptides]	030	123	3.5	3	82.4	82.9	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62125	329.27597
[show peptides]	030	84	2.3	2	83.2	82.9	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62125	329.27597
[show peptides]	031	385	17.4	11	85.3	77.9	1500	-0.525	AT2G38040.1	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62125	353.08481
[show peptides]	031	200	3.7	4	82.4	77.9	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62125	353.08481
[show peptides]	031	128	2.7	2	88.7	77.9	1500	-0.293	AT5G53170.1	FtsH11, FtsH protease 11	proteases	V) protein folding & processing	plastid	419.62125	353.08481
[show peptides]	031	74	2.3	2	83.2	77.9	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62125	353.08481
[show peptides]	032	675	15.9	13	103.4	79.5	270	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1654.24578	345.32788
[show peptides]	032	566	18.1	14	56.0	79.5	270	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1654.24578	345.32788
[show peptides]	032	468	11.3	9	102.0	79.5	270	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1654.24578	345.32788
[show peptides]	032	372	11.8	7	51.8	79.5	270	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1654.24578	345.32788
[show peptides]	032	197	10.8	4	39.5	79.5	270	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1654.24578	345.32788
[show peptides]	032	127	6.5	3	47.4	79.5	270	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1654.24578	345.32788
[show peptides]	032	81	4.9	2	55.3	79.5	270	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1654.24578	345.32788
[show peptides]	032	64	2.8	1	53.9	79.5	270	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1654.24578	345.32788
[show peptides]	032	60	3.8	1	35.3	79.5	270	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1654.24578	345.32788
[show peptides]	032	45	1.4	1	99.8	79.5	270	-0.546	AT1G69830.1	ATAMY3, AMY3, alpha-amylase-like 3	starch metabolism	VI) other metabolic pathways	plastid	1654.24578	345.32788
[show peptides]	032	41	3.1	1	38.9	79.5	270	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1654.24578	345.32788
[show peptides]	032	39	0.9	2	173.3	79.5	270	-0.760	AT4G32620.1	Enhancer of polycomb-like transcription factor protein (AT4G32620.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid new	1654.24578	345.32788
[show peptides]	032	36	1.7	1	46.1	79.5	270	-0.216	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1654.24578	345.32788
[show peptides]	033	1677	34.4	34	108.5	80.3	170	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.02834	341.61609
[show peptides]	033	1416	29.8	27	102.0	80.3	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.02834	341.61609
[show peptides]	033	953	23.7	21	103.4	80.3	170	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1988.02834	341.61609
[show peptides]	033	89	2.5	2	95.1	80.3	170	-0.381	AT3G46970.1	ATPHS2, PHS2, alpha-glucan phosphorylase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	1988.02834	341.61609
[show peptides]	033	48	1.6	1	56.8	80.3	170	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1988.02834	341.61609
[show peptides]	034	309	7.3	6	85.3	77.6	1700	-0.525	AT2G38040.1	CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit	fatty acid metabolism	VI) other metabolic pathways	plastid	303.55873	354.69647
[show peptides]	034	211	3.7	4	82.4	77.6	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.55873	354.69647
[show peptides]	034	125	2.7	2	88.7	77.6	1700	-0.293	AT5G53170.1	FtsH11, FtsH protease 11	proteases	V) protein folding & processing	plastid	303.55873	354.69647
[show peptides]	034	89	2.3	2	83.2	77.6	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.55873	354.69647
[show peptides]	035	700	28.0	14	52.9	79.4	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	345.95834
[show peptides]	035	380	9.0	8	103.4	79.4	430	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	1357.29361	345.95834
[show peptides]	035	175	2.6	2	99.8	79.4	430	-0.546	AT1G69830.1	ATAMY3, AMY3, alpha-amylase-like 3	starch metabolism	VI) other metabolic pathways	plastid	1357.29361	345.95834
[show peptides]	035	88	5.1	2	47.4	79.4	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29361	345.95834
[show peptides]	035	58	4.4	1	20.2	79.4	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	345.95834
[show peptides]	036	419	14.4	7	52.9	65.3	470	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1239.01658	429.37239
[show peptides]	036	300	6.7	6	83.2	65.3	470	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1239.01658	429.37239
[show peptides]	036	274	6.3	6	82.4	65.3	470	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1239.01658	429.37239
[show peptides]	036	45	5.3	2	55.3	65.3	470	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1239.01658	429.37239
[show peptides]	037	64	3.5	1	63.8	69.4	34	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta	Cpn60	V) protein folding & processing	plastid	2683.67714	401.26713
[show peptides]	037	43	1.6	1	56.8	69.4	34	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2683.67714	401.26713
[show peptides]	037	32	1.9	1	46.7	69.4	34	0.036	AT5G47950.1	HXXXD-type acyl-transferase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2683.67714	401.26713
[show peptides]	038	966	28.1	21	86.0	74.5	87	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2348.57539	371.10104
[show peptides]	038	818	20.0	15	79.9	74.5	87	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2348.57539	371.10104
[show peptides]	038	194	3.9	6	176.6	74.5	87	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1	amino acid metabolism	VI) other metabolic pathways	plastid	2348.57539	371.10104
[show peptides]	038	129	4.3	3	92.5	74.5	87	-0.473	AT5G03650.1	SBE2.2, starch branching enzyme 2.2	starch metabolism	VI) other metabolic pathways	plastid	2348.57539	371.10104
[show peptides]	038	84	3.5	2	76.5	74.5	87	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2348.57539	371.10104
[show peptides]	038	83	6.3	2	42.8	74.5	87	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2348.57539	371.10104
[show peptides]	038	59	2.3	1	51.9	74.5	87	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2348.57539	371.10104
[show peptides]	038	36	1.6	1	56.8	74.5	87	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2348.57539	371.10104
[show peptides]	039	1222	31.8	21	88.6	75.1	170	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein	CR88	V) protein folding & processing	plastid	1988.08187	367.73638
[show peptides]	039	545	14.2	12	102.0	75.1	170	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08187	367.73638
[show peptides]	039	140	4.7	3	68.3	75.1	170	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08187	367.73638
[show peptides]	039	108	4.1	3	81.9	75.1	170	-0.772	AT3G16000.1	MFP1, MAR binding filament-like protein 1	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1988.08187	367.73638
[show peptides]	039	92	5.7	3	86.0	75.1	170	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1988.08187	367.73638
[show peptides]	039	76	4.6	2	53.9	75.1	170	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1988.08187	367.73638
[show peptides]	039	62	4.5	2	55.3	75.1	170	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1988.08187	367.73638
[show peptides]	039	42	2.3	1	51.9	75.1	170	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1988.08187	367.73638
[show peptides]	039	42	0.9	1	108.5	75.1	170	-0.360	AT3G29320.1	Glycosyl transferase, family 35	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1988.08187	367.73638
[show peptides]	039	41	3.0	1	28.2	75.1	170	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1988.08187	367.73638
[show peptides]	040	851	20.3	17	102.0	74.5	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2224.04068	370.98799
[show peptides]	040	788	25.6	15	88.6	74.5	110	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein	CR88	V) protein folding & processing	plastid	2224.04068	370.98799
[show peptides]	040	363	15.8	7	55.3	74.5	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2224.04068	370.98799
[show peptides]	040	307	17.3	7	42.9	74.5	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2224.04068	370.98799
[show peptides]	040	294	17.6	5	28.2	74.5	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2224.04068	370.98799
[show peptides]	040	270	11.1	7	86.0	74.5	110	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2224.04068	370.98799
[show peptides]	040	206	7.0	4	79.9	74.5	110	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2224.04068	370.98799
[show peptides]	040	158	6.9	5	103.4	74.5	110	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2224.04068	370.98799
[show peptides]	040	73	4.4	2	68.3	74.5	110	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2224.04068	370.98799
[show peptides]	040	68	2.3	1	51.9	74.5	110	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2224.04068	370.98799
[show peptides]	040	38	1.1	1	76.5	74.5	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2224.04068	370.98799
[show peptides]	041	596	21.5	16	56.0	74.3	270	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1654.72724	372.24814
[show peptides]	041	419	9.9	7	88.6	74.3	270	-0.552	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5, Chaperone protein htpG family protein	CR88	V) protein folding & processing	plastid	1654.72724	372.24814
[show peptides]	041	341	11.6	6	51.8	74.3	270	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1654.72724	372.24814
[show peptides]	041	231	10.8	4	39.5	74.3	270	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1654.72724	372.24814
[show peptides]	041	153	11.2	3	35.3	74.3	270	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1654.72724	372.24814
[show peptides]	041	135	7.3	3	55.3	74.3	270	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1654.72724	372.24814
[show peptides]	041	89	5.1	2	38.9	74.3	270	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1654.72724	372.24814
[show peptides]	041	35	3.8	1	42.8	74.3	270	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	1654.72724	372.24814
[show peptides]	041	35	2.8	1	68.3	74.3	270	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1654.72724	372.24814
[show peptides]	041	34	2.9	1	28.4	74.3	270	-0.648	AT3G13580.1	Rpl30/L7, Ribosomal protein L30/L7 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	cytosol	1654.72724	372.24814
[show peptides]	042	235	3.7	4	82.4	72.0	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62125	385.70705
[show peptides]	042	102	2.3	2	83.2	72.0	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62125	385.70705
[show peptides]	042	69	3.9	3	89.1	72.0	1500	-0.365	AT3G46740.1	Toc75-III, MAR1, translocon at the outer envelope membrane of chloroplasts 75-III	protein transporters	III) transport	plastid	419.62125	385.70705
[show peptides]	043	195	6.1	5	83.2	71.9	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.55873	385.97114
[show peptides]	043	101	3.5	2	82.4	71.9	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.55873	385.97114
[show peptides]	043	39	1.6	1	56.8	71.9	1700	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	303.55873	385.97114
[show peptides]	044	1320	38.2	20	63.8	64.6	790	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta	Cpn60	V) protein folding & processing	plastid	866.60704	467.49077
[show peptides]	044	1253	37.4	19	63.3	64.6	790	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	866.60704	467.49077
[show peptides]	044	340	12.6	5	62.0	64.6	790	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	866.60704	467.49077
[show peptides]	045	427	25.3	8	52.9	63.3	340	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1466.01742	444.167
[show peptides]	045	288	7.2	6	82.4	63.3	340	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1466.01742	444.167
[show peptides]	045	263	7.2	6	83.2	63.3	340	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1466.01742	444.167
[show peptides]	045	242	10.5	4	55.3	63.3	340	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1466.01742	444.167
[show peptides]	045	54	5.0	2	53.9	63.3	340	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1466.01742	444.167
[show peptides]	046	1084	33.1	19	79.9	70.4	110	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2217.79218	395.43627
[show peptides]	046	831	28.7	14	75.2	70.4	110	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2217.79218	395.43627
[show peptides]	046	784	27.8	12	55.3	70.4	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2217.79218	395.43627
[show peptides]	046	512	17.8	12	76.5	70.4	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2217.79218	395.43627
[show peptides]	046	427	14.8	10	76.9	70.4	110	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2217.79218	395.43627
[show peptides]	046	362	19.5	8	42.9	70.4	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2217.79218	395.43627
[show peptides]	046	298	17.3	7	43.0	70.4	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2217.79218	395.43627
[show peptides]	046	251	11.2	4	28.2	70.4	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2217.79218	395.43627
[show peptides]	046	212	12.1	4	28.6	70.4	110	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2217.79218	395.43627
[show peptides]	046	195	10.2	6	74.1	70.4	110	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2217.79218	395.43627
[show peptides]	046	180	5.6	4	102.0	70.4	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2217.79218	395.43627
[show peptides]	046	162	8.8	4	53.9	70.4	110	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2217.79218	395.43627
[show peptides]	046	75	3.3	2	61.1	70.4	110	-0.404	AT5G26000.1	TGG1, BGLU38, thioglucoside glucohydrolase 1	glucosinolate metabolism	VI) other metabolic pathways	vacuole	2217.79218	395.43627
[show peptides]	046	53	6.8	2	28.7	70.4	110	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2217.79218	395.43627
[show peptides]	046	50	2.9	2	27.5	70.4	110	-0.566	AT5G53030.1	Protein of unknown function (DUF688)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2217.79218	395.43627
[show peptides]	046	33	1.5	1	79.0	70.4	110	-0.081	AT1G79600.1	Protein kinase superfamily protein (AT1G79600.1)	protein modification	V) protein folding & processing	plastid	2217.79218	395.43627
[show peptides]	047	759	25.0	12	55.3	63.1	320	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1514.40502	445.53481
[show peptides]	047	613	23.3	11	53.9	63.1	320	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1514.40502	445.53481
[show peptides]	047	267	5.4	5	82.4	63.1	320	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1514.40502	445.53481
[show peptides]	047	242	6.7	6	83.2	63.1	320	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1514.40502	445.53481
[show peptides]	047	217	12.5	5	52.9	63.1	320	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1514.40502	445.53481
[show peptides]	048	369	13.1	8	79.9	70.0	100	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2279.82256	397.94516
[show peptides]	048	146	7.9	4	76.5	70.0	100	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2279.82256	397.94516
[show peptides]	049	2420	48.0	44	79.9	69.9	89	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2336.12726	398.3695
[show peptides]	049	901	20.6	15	76.9	69.9	89	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2336.12726	398.3695
[show peptides]	049	853	20.8	15	76.5	69.9	89	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2336.12726	398.3695
[show peptides]	049	69	3.3	1	42.8	69.9	89	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2336.12726	398.3695
[show peptides]	049	67	2.3	1	51.9	69.9	89	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2336.12726	398.3695
[show peptides]	049	37	1.4	1	41.7	69.9	89	-0.276	AT1G06640.1	1-aminocyclopropane-1-carboxylate oxidase homolog 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2336.12726	398.3695
[show peptides]	049	33	0.4	1	137.8	69.9	89	-0.834	AT2G41960.1	AT2G41960.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	2336.12726	398.3695
[show peptides]	050	126	5.7	3	76.5	68.9	56	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2520.42564	404.74011
[show peptides]	050	47	1.6	1	56.8	68.9	56	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2520.42564	404.74011
[show peptides]	051	1679	48.2	30	52.9	66.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	423.80027
[show peptides]	051	479	59.1	9	20.3	66.1	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	1357.29361	423.80027
[show peptides]	051	429	48.9	8	20.2	66.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	423.80027
[show peptides]	051	187	4.6	4	82.4	66.1	430	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1357.29361	423.80027
[show peptides]	051	55	1.1	1	83.2	66.1	430	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1357.29361	423.80027
[show peptides]	051	33	1.0	1	56.7	66.1	430	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	1357.29361	423.80027
[show peptides]	052	222	3.7	4	82.4	64.1	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62125	438.26182
[show peptides]	052	182	4.4	4	83.2	64.1	1500	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	419.62125	438.26182
[show peptides]	052	44	1.6	1	85.2	64.1	1500	0.577	ATCG01010.1	NdhF	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	438.26182
[show peptides]	052	36	1.5	1	65.7	64.1	1500	-0.358	AT1G16720.1	HCF173, high chlorophyll fluorescence phenotype 173	g) auxiliary proteins	I) photophosphorylation	plastid	419.62125	438.26182
[show peptides]	053	2311	56.2	37	63.8	60.4	790	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta	Cpn60	V) protein folding & processing	plastid	866.60704	481.95057
[show peptides]	053	2287	42.7	30	62.0	60.4	790	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	866.60704	481.95057
[show peptides]	053	2129	54.0	36	63.3	60.4	790	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	866.60704	481.95057
[show peptides]	053	67	3.1	1	38.9	60.4	790	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	866.60704	481.95057
[show peptides]	053	46	1.7	1	33.4	60.4	790	-1.102	AT1G74870.1	RING/U-box superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	866.60704	481.95057
[show peptides]	053	42	4.1	2	34.3	60.4	790	-1.077	AT1G79960.1	ATOFP14, OFP14, ovate family protein 14	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	866.60704	481.95057
[show peptides]	053	36	0.9	1	61.6	60.4	790	-0.629	AT3G46590.1	TRFL1, ATTRP2, TRP2, TRF-like 1	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	866.60704	481.95057
[show peptides]	054	198	3.7	4	82.4	63.2	1700	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	303.55873	444.72432
[show peptides]	054	82	2.3	2	83.2	63.2	1700	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	303.55873	444.72432
[show peptides]	055	1516	42.3	28	75.2	64.8	110	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2222.84088	432.57093
[show peptides]	055	1147	36.5	20	74.1	64.8	110	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2222.84088	432.57093
[show peptides]	055	1021	31.6	20	76.7	64.8	110	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2222.84088	432.57093
[show peptides]	055	774	28.0	17	65.5	64.8	110	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2222.84088	432.57093
[show peptides]	055	684	19.3	12	73.2	64.8	110	-0.125	AT1G06430.1	FtsH8, FtsH protease 8	proteases	V) protein folding & processing	plastid	2222.84088	432.57093
[show peptides]	055	478	17.3	11	76.5	64.8	110	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2222.84088	432.57093
[show peptides]	055	184	7.8	3	42.9	64.8	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2222.84088	432.57093
[show peptides]	055	147	11.2	3	28.2	64.8	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2222.84088	432.57093
[show peptides]	055	117	7.7	3	55.3	64.8	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2222.84088	432.57093
[show peptides]	055	111	7.5	3	43.0	64.8	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2222.84088	432.57093
[show peptides]	055	86	2.8	2	73.8	64.8	110	-0.295	AT5G67030.1	ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP, zeaxanthin epoxidase (ZEP) (ABA1)	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2222.84088	432.57093
[show peptides]	055	65	2.3	1	51.9	64.8	110	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2222.84088	432.57093
[show peptides]	055	59	1.6	1	102.0	64.8	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2222.84088	432.57093
[show peptides]	055	51	1.5	1	78.7	64.8	110	-0.244	AT3G05350.1	Metallopeptidase M24 family protein	proteases	V) protein folding & processing	plastid	2222.84088	432.57093
[show peptides]	055	32	1.6	1	56.8	64.8	110	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2222.84088	432.57093
[show peptides]	056	537	22.7	10	38.9	60.1	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	419	16.0	7	55.3	60.1	260	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	418	23.4	9	35.3	60.1	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	315	11.6	5	39.5	60.1	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	218	8.2	4	63.3	60.1	260	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	1663.74425	469.72351
[show peptides]	056	212	10.4	4	53.9	60.1	260	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	169	6.9	3	56.0	60.1	260	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	163	5.3	3	62.0	60.1	260	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	1663.74425	469.72351
[show peptides]	056	147	5.3	2	51.8	60.1	260	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	77	5.6	1	24.1	60.1	260	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1663.74425	469.72351
[show peptides]	056	34	2.2	1	41.0	60.1	260	-0.702	AT1G64500.1	Glutaredoxin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	1663.74425	469.72351
[show peptides]	057	2100	63.0	35	52.9	53.5	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	532.32247
[show peptides]	057	52	2.8	1	55.3	53.5	430	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1357.29361	532.32247
[show peptides]	057	45	6.7	1	20.2	53.5	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	532.32247
[show peptides]	058	2130	57.4	43	67.0	60.9	47	-0.159	AT4G24620.1	PGI1, PGI, phosphoglucose isomerase 1	starch metabolism	VI) other metabolic pathways	plastid	2579.36858	463.38263
[show peptides]	058	1899	52.3	30	63.8	60.9	47	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta	Cpn60	V) protein folding & processing	plastid	2579.36858	463.38263
[show peptides]	058	1671	50.8	28	63.3	60.9	47	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2579.36858	463.38263
[show peptides]	058	663	19.1	12	67.9	60.9	47	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2579.36858	463.38263
[show peptides]	058	641	24.9	11	62.0	60.9	47	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2579.36858	463.38263
[show peptides]	058	86	5.9	3	67.3	60.9	47	-0.215	AT1G70820.1	Phosphoglucomutase, putative / glucose phosphomutase, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2579.36858	463.38263
[show peptides]	058	71	3.4	2	79.9	60.9	47	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2579.36858	463.38263
[show peptides]	058	52	2.3	1	51.9	60.9	47	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2579.36858	463.38263
[show peptides]	058	51	1.8	1	65.1	60.9	47	-0.103	AT3G22960.1	PKP1, PKP-ALPHA, Pyruvate kinase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2579.36858	463.38263
[show peptides]	058	39	1.2	1	64.7	60.9	47	-0.401	AT2G38910.1	CPK20, calcium-dependent protein kinase 20	protein modification	V) protein folding & processing	cytosol	2579.36858	463.38263
[show peptides]	058	37	1.6	1	56.8	60.9	47	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2579.36858	463.38263
[show peptides]	058	36	2.6	1	34.6	60.9	47	-0.510	AT5G10880.1	tRNA synthetase-related / tRNA ligase-related	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2579.36858	463.38263
[show peptides]	058	36	2.6	1	55.3	60.9	47	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2579.36858	463.38263
[show peptides]	058	33	2.0	1	63.8	60.9	47	-0.071	AT3G58610.1	Ketol-acid reductoisomerase	amino acid metabolism	VI) other metabolic pathways	plastid	2579.36858	463.38263
[show peptides]	058	32	2.4	1	65.6	60.9	47	-0.218	AT4G19170.1	NCED4, CCD4, nine-cis-epoxycarotenoid dioxygenase 4	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2579.36858	463.38263
[show peptides]	059	208	9.4	5	79.9	60.7	94	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2310.23563	464.87275
[show peptides]	059	41	3.5	1	27.1	60.7	94	-0.650	AT4G20440.1	Small nuclear ribonucleoprotein associated protein B, smB	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	2310.23563	464.87275
[show peptides]	060	1122	36.7	19	62.0	61.8	82	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2372.5175	455.96153
[show peptides]	060	867	28.5	15	63.8	61.8	82	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta	Cpn60	V) protein folding & processing	plastid	2372.5175	455.96153
[show peptides]	060	763	26.2	13	63.3	61.8	82	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2372.5175	455.96153
[show peptides]	060	518	15.9	9	67.9	61.8	82	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2372.5175	455.96153
[show peptides]	060	492	6.8	8	176.6	61.8	82	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1	amino acid metabolism	VI) other metabolic pathways	plastid	2372.5175	455.96153
[show peptides]	060	419	14.2	9	79.9	61.8	82	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2372.5175	455.96153
[show peptides]	060	114	9.0	3	42.8	61.8	82	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2372.5175	455.96153
[show peptides]	060	111	5.4	3	67.3	61.8	82	-0.215	AT1G70820.1	Phosphoglucomutase, putative / glucose phosphomutase, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2372.5175	455.96153
[show peptides]	060	72	3.7	2	68.3	61.8	82	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2372.5175	455.96153
[show peptides]	060	70	2.0	1	66.8	61.8	82	-0.215	AT2G47940.1	Deg2, DegP2, DegP protease 2	proteases	V) protein folding & processing	plastid	2372.5175	455.96153
[show peptides]	060	64	2.3	1	51.9	61.8	82	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2372.5175	455.96153
[show peptides]	060	35	1.5	2	160.9	61.8	82	0.019	AT1G15520.1	PDR12, ATPDR12, ABCG40, ATABCG40, pleiotropic drug resistance 12	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2372.5175	455.96153
[show peptides]	061	2198	48.2	37	75.2	61.8	70	-0.116	AT5G42270.1	FtsH5, VAR1, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2436.51221	455.85544
[show peptides]	061	1641	37.6	28	76.7	61.8	70	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2436.51221	455.85544
[show peptides]	061	571	20.9	13	76.5	61.8	70	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2436.51221	455.85544
[show peptides]	061	468	18.6	11	73.8	61.8	70	-0.295	AT5G67030.1	ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP, zeaxanthin epoxidase (ZEP) (ABA1)	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2436.51221	455.85544
[show peptides]	061	445	19.6	11	74.1	61.8	70	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2436.51221	455.85544
[show peptides]	061	441	16.7	10	79.9	61.8	70	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2436.51221	455.85544
[show peptides]	061	396	16.3	10	76.9	61.8	70	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2436.51221	455.85544
[show peptides]	061	146	2.6	3	80.8	61.8	70	0.615	AT1G15690.1	AVP1, ATAVP3, AVP-3, AtVHP1;1, Pyrophosphate-energized vacuolar membrane proton pump 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	vacuole	2436.51221	455.85544
[show peptides]	061	118	5.8	3	79.0	61.8	70	-0.081	AT1G79600.1	Protein kinase superfamily protein (AT1G79600.1)	protein modification	V) protein folding & processing	plastid	2436.51221	455.85544
[show peptides]	061	106	4.8	2	65.5	61.8	70	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2436.51221	455.85544
[show peptides]	061	76	2.9	2	77.4	61.8	70	-0.011	AT1G71810.1	Protein kinase superfamily protein (AT1G71810.1)	protein modification	V) protein folding & processing	plastid	2436.51221	455.85544
[show peptides]	061	40	1.6	1	35.4	61.8	70	-0.783	AT1G01680.1	ATPUB54, PUB54, plant U-box 54	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	2436.51221	455.85544
[show peptides]	062	55	1.8	1	64.9	60.3	56	-0.101	AT3G23940.1	Dehydratase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2522.17303	468.00723
[show peptides]	062	37	1.6	1	56.8	60.3	56	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2522.17303	468.00723
[show peptides]	063	639	27.4	12	55.3	56.7	110	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2223.06122	500.0623
[show peptides]	063	393	27.3	9	53.9	56.7	110	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2223.06122	500.0623
[show peptides]	063	77	6.7	2	28.2	56.7	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2223.06122	500.0623
[show peptides]	063	34	1.6	1	56.8	56.7	110	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2223.06122	500.0623
[show peptides]	064	1085	35.5	19	53.9	58.7	540	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	904	33.4	18	52.9	58.7	540	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1155.03048	481.95057
[show peptides]	064	847	26.6	13	55.3	58.7	540	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	284	5.4	5	82.4	58.7	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	244	12.2	4	38.9	58.7	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	156	7.9	3	39.5	58.7	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	120	3.3	3	83.2	58.7	540	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	110	4.7	2	56.0	58.7	540	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	66	3.4	1	51.8	58.7	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03048	481.95057
[show peptides]	064	54	3.8	2	42.5	58.7	540	-0.051	AT5G46170.1	F-box family protein (AT5G46170.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	1155.03048	481.95057
[show peptides]	064	44	1.0	1	56.7	58.7	540	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	1155.03048	481.95057
[show peptides]	065	1891	59.0	38	53.9	56.2	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	505.1722
[show peptides]	065	1719	39.3	26	55.3	56.2	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	505.1722
[show peptides]	065	172	6.3	3	54.3	56.2	300	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1562.90571	505.1722
[show peptides]	065	77	8.6	3	52.9	56.2	300	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1562.90571	505.1722
[show peptides]	065	53	1.6	1	82.4	56.2	300	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1562.90571	505.1722
[show peptides]	065	38	1.2	1	64.2	56.2	300	-0.396	AT3G55660.1	ATROPGEF6, ROPGEF6, ROP (rho of plants) guanine nucleotide exchange factor 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1562.90571	505.1722
[show peptides]	065	35	2.1	1	41.9	56.2	300	0.160	AT2G26360.1	Mitochondrial substrate carrier family protein	other transporters	III) transport	plastid new	1562.90571	505.1722
[show peptides]	065	33	4.2	1	21.1	56.2	300	-0.540	AT4G20780.1	CML42, calmodulin like 42	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1562.90571	505.1722
[show peptides]	066	2192	65.4	46	57.4	56.8	160	-0.328	AT4G37930.1	SHM1, STM, SHMT1, serine transhydroxymethyltransferase 1	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2022.95955	499.66219
[show peptides]	066	1429	37.3	21	55.3	56.8	160	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2022.95955	499.66219
[show peptides]	066	1249	49.4	22	53.9	56.8	160	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2022.95955	499.66219
[show peptides]	066	824	37.6	13	54.3	56.8	160	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2022.95955	499.66219
[show peptides]	066	388	18.1	9	58.2	56.8	160	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2022.95955	499.66219
[show peptides]	066	169	7.3	3	61.2	56.8	160	-0.208	AT5G03940.1	SRP54CP, chloroplast signal recognition particle	protein transporters	III) transport	plastid	2022.95955	499.66219
[show peptides]	066	158	7.3	3	49.5	56.8	160	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2022.95955	499.66219
[show peptides]	066	137	6.4	3	61.7	56.8	160	-0.359	AT5G55220.1	Trigger factor type chaperone family protein	other HSP	V) protein folding & processing	plastid	2022.95955	499.66219
[show peptides]	066	136	8.7	3	60.6	56.8	160	-0.281	AT2G24820.1	TIC55-II, translocon at the inner envelope membrane of chloroplasts 55-II	protein transporters	III) transport	plastid	2022.95955	499.66219
[show peptides]	066	124	7.3	3	52.9	56.8	160	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	2022.95955	499.66219
[show peptides]	066	51	2.3	1	51.9	56.8	160	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2022.95955	499.66219
[show peptides]	066	51	1.5	1	57.6	56.8	160	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2022.95955	499.66219
[show peptides]	066	49	2.4	1	63.8	56.8	160	-0.071	AT3G58610.1	Ketol-acid reductoisomerase	amino acid metabolism	VI) other metabolic pathways	plastid	2022.95955	499.66219
[show peptides]	066	35	1.7	1	57.9	56.8	160	-0.313	AT2G41680.1	NTRC, NADPH-dependent thioredoxin reductase C	antioxidants	VI) other metabolic pathways	plastid	2022.95955	499.66219
[show peptides]	067	294	13.6	6	52.9	56.7	1700	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	303.55873	500.80887
[show peptides]	067	79	5.0	2	53.9	56.7	1700	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	303.55873	500.80887
[show peptides]	067	64	2.4	1	49.5	56.7	1700	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	303.55873	500.80887
[show peptides]	067	41	2.5	2	57.6	56.7	1700	-0.524	AT4G16820.1	PLA-I{beta]2, alpha/beta-Hydrolases superfamily protein	fatty acid metabolism	VI) other metabolic pathways	plastid	303.55873	500.80887
[show peptides]	068	848	32.6	18	52.9	56.5	840	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	827.28525	502.16887
[show peptides]	068	621	17.3	8	63.8	56.5	840	-0.112	AT1G55490.1	Cpn60B, LEN1, chaperonin 60 beta	Cpn60	V) protein folding & processing	plastid	827.28525	502.16887
[show peptides]	068	553	18.1	8	62.0	56.5	840	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	827.28525	502.16887
[show peptides]	068	34	1.0	1	56.7	56.5	840	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	827.28525	502.16887
[show peptides]	069	407	16.7	8	52.9	56.0	1500	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	419.62125	507.30481
[show peptides]	069	119	7.5	3	55.3	56.0	1500	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	419.62125	507.30481
[show peptides]	069	64	2.4	1	49.5	56.0	1500	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	419.62125	507.30481
[show peptides]	069	32	1.1	1	82.4	56.0	1500	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	419.62125	507.30481
[show peptides]	070	2098	59.0	32	53.9	55.5	540	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1155.03048	511.79445
[show peptides]	070	1201	39.5	22	52.9	55.5	540	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1155.03048	511.79445
[show peptides]	070	1046	32.9	15	55.3	55.5	540	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1155.03048	511.79445
[show peptides]	070	361	12.6	8	56.0	55.5	540	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1155.03048	511.79445
[show peptides]	070	201	4.6	4	82.4	55.5	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03048	511.79445
[show peptides]	070	183	6.8	2	38.9	55.5	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03048	511.79445
[show peptides]	070	169	9.9	3	51.8	55.5	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03048	511.79445
[show peptides]	070	43	1.0	1	56.7	55.5	540	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	1155.03048	511.79445
[show peptides]	070	38	1.7	1	46.1	55.5	540	-0.216	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1155.03048	511.79445
[show peptides]	070	36	2.5	1	39.5	55.5	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03048	511.79445
[show peptides]	071	2151	59.0	44	53.9	55.7	90	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2329.30973	510.635
[show peptides]	071	920	24.4	16	67.0	55.7	90	0.065	AT4G16155.1	Dihydrolipoyl dehydrogenases	antioxidants	VI) other metabolic pathways	plastid	2329.30973	510.635
[show peptides]	071	604	25.0	11	55.3	55.7	90	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2329.30973	510.635
[show peptides]	071	547	17.2	10	60.7	55.7	90	-0.011	AT3G16950.1	PDH-E3, pyruvate dehydrogenase subunit E3	fatty acid metabolism	VI) other metabolic pathways	mitochondrion	2329.30973	510.635
[show peptides]	071	317	14.3	6	54.3	55.7	90	-0.349	AT3G46780.1	pTAC16, plastid transcriptionally active 16	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2329.30973	510.635
[show peptides]	071	199	16.4	6	42.5	55.7	90	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2329.30973	510.635
[show peptides]	071	143	5.0	2	61.2	55.7	90	-0.208	AT5G03940.1	SRP54CP, chloroplast signal recognition particle	protein transporters	III) transport	plastid	2329.30973	510.635
[show peptides]	071	141	6.7	3	49.4	55.7	90	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2329.30973	510.635
[show peptides]	071	129	7.1	3	58.2	55.7	90	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2329.30973	510.635
[show peptides]	071	112	7.3	3	49.5	55.7	90	-0.325	AT1G07920.1	GTP binding Elongation factor Tu family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	cytosol	2329.30973	510.635
[show peptides]	071	81	5.2	2	52.9	55.7	90	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	2329.30973	510.635
[show peptides]	071	44	4.2	2	51.9	55.7	90	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2329.30973	510.635
[show peptides]	071	42	3.8	1	28.7	55.7	90	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2329.30973	510.635
[show peptides]	071	40	3.0	1	28.2	55.7	90	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2329.30973	510.635
[show peptides]	071	37	4.7	2	31.6	55.7	90	0.038	AT3G12290.1	Amino acid dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2329.30973	510.635
[show peptides]	071	33	1.6	1	56.8	55.7	90	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2329.30973	510.635
[show peptides]	072	962	31.1	15	49.4	53.7	66	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2464.23561	530.49936
[show peptides]	072	830	37.8	16	53.9	53.7	66	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2464.23561	530.49936
[show peptides]	072	801	33.9	16	54.0	53.7	66	-0.042	AT1G48030.1	mtLPD1, mitochondrial lipoamide dehydrogenase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.23561	530.49936
[show peptides]	072	607	26.8	12	51.8	53.7	66	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	563	16.0	11	51.9	53.7	66	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2464.23561	530.49936
[show peptides]	072	353	12.7	7	58.3	53.7	66	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit	fatty acid metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	269	15.5	6	49.8	53.7	66	-0.237	AT2G44640.1	AT2G44640.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2464.23561	530.49936
[show peptides]	072	257	8.2	4	58.5	53.7	66	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase	antioxidants	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	240	8.9	5	79.9	53.7	66	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2464.23561	530.49936
[show peptides]	072	189	10.3	4	56.1	53.7	66	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase	amino acid metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	170	9.8	4	53.3	53.7	66	-0.183	AT1G23310.1	GGT1, AOAT1, GGAT1, glutamate:glyoxylate aminotransferase	amino acid metabolism	VI) other metabolic pathways	peroxisome	2464.23561	530.49936
[show peptides]	072	165	7.1	3	55.2	53.7	66	-0.123	AT3G22200.1	POP2, GABA-T, HER1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2464.23561	530.49936
[show peptides]	072	132	10.1	4	55.3	53.7	66	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2464.23561	530.49936
[show peptides]	072	114	4.7	4	76.5	53.7	66	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2464.23561	530.49936
[show peptides]	072	108	6.7	2	27.8	53.7	66	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	96	6.3	2	55.0	53.7	66	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	91	4.8	2	57.0	53.7	66	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2464.23561	530.49936
[show peptides]	072	78	2.2	1	54.1	53.7	66	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	64	2.2	1	50.3	53.7	66	-0.357	AT1G20010.1	TUB5, tubulin beta-5 chain	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2464.23561	530.49936
[show peptides]	072	60	3.6	2	57.6	53.7	66	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	55	2.5	1	44.5	53.7	66	-0.977	AT1G06190.1	Rho termination factor	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2464.23561	530.49936
[show peptides]	072	53	5.7	2	51.6	53.7	66	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2464.23561	530.49936
[show peptides]	072	51	4.0	2	57.9	53.7	66	-0.312	AT4G39980.1	DHS1, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1	amino acid metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	45	2.5	1	52.8	53.7	66	-0.322	AT1G32500.1	ATNAP6, NAP6, non-intrinsic ABC protein 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2464.23561	530.49936
[show peptides]	072	40	3.1	1	53.3	53.7	66	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2464.23561	530.49936
[show peptides]	072	38	2.0	1	61.0	53.7	66	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	37	3.0	1	55.1	53.7	66	-0.166	AT5G23010.1	MAM1, IMS3, methylthioalkylmalate synthase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2464.23561	530.49936
[show peptides]	072	35	1.7	1	76.7	53.7	66	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2464.23561	530.49936
[show peptides]	072	33	2.1	1	49.9	53.7	66	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Isoform 1)	calvin cycle	II) carbon fixation	plastid	2464.23561	530.49936
[show peptides]	073	931	38.5	17	51.8	53.7	47	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	925	39.5	19	51.9	53.7	47	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2582.9916	530.77289
[show peptides]	073	894	28.1	12	49.4	53.7	47	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2582.9916	530.77289
[show peptides]	073	519	22.2	11	58.3	53.7	47	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit	fatty acid metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	401	18.1	8	51.6	53.7	47	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2582.9916	530.77289
[show peptides]	073	337	16.6	7	49.8	53.7	47	-0.237	AT2G44640.1	AT2G44640.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2582.9916	530.77289
[show peptides]	073	325	10.5	7	58.5	53.7	47	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase	antioxidants	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	299	14.3	7	54.1	53.7	47	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	274	17.3	6	53.9	53.7	47	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2582.9916	530.77289
[show peptides]	073	247	9.5	4	56.1	53.7	47	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase	amino acid metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	217	21.3	5	27.6	53.7	47	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	188	8.6	3	53.3	53.7	47	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2582.9916	530.77289
[show peptides]	073	184	11.2	4	55.0	53.7	47	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	181	12.6	5	52.8	53.7	47	-0.322	AT1G32500.1	ATNAP6, NAP6, non-intrinsic ABC protein 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2582.9916	530.77289
[show peptides]	073	137	10.3	4	55.3	53.7	47	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2582.9916	530.77289
[show peptides]	073	129	4.8	2	57.0	53.7	47	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2582.9916	530.77289
[show peptides]	073	118	3.8	2	58.5	53.7	47	-0.090	AT5G57030.1	LUT2, Lycopene beta/epsilon cyclase protein	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	115	3.5	3	76.5	53.7	47	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2582.9916	530.77289
[show peptides]	073	106	3.8	2	59.8	53.7	47	-0.330	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G02150.1)	TPR proteins	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	105	4.8	2	49.9	53.7	47	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Isoform 1)	calvin cycle	II) carbon fixation	plastid	2582.9916	530.77289
[show peptides]	073	103	5.9	3	61.0	53.7	47	-0.090	AT4G34740.1	ATASE2, CIA1, ATPURF2, ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	90	4.4	2	56.6	53.7	47	-0.131	AT5G48300.1	ADG1, APS1, ADP glucose pyrophosphorylase 1	starch metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	83	3.6	2	57.6	53.7	47	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	77	4.2	2	57.9	53.7	47	-0.312	AT4G39980.1	DHS1, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1	amino acid metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	64	3.1	2	54.6	53.7	47	-0.193	AT1G14030.1	Rubisco methyltransferase family protein (AT1G14030.1)	other proteins	II) carbon fixation	plastid	2582.9916	530.77289
[show peptides]	073	60	6.7	2	44.5	53.7	47	-0.977	AT1G06190.1	Rho termination factor	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2582.9916	530.77289
[show peptides]	073	49	1.8	1	57.5	53.7	47	-0.274	AT5G14260.1	Rubisco methyltransferase family protein (AT5G14260.1)	other proteins	II) carbon fixation	plastid	2582.9916	530.77289
[show peptides]	073	45	2.1	1	55.8	53.7	47	-0.020	AT1G48860.1	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	amino acid metabolism	VI) other metabolic pathways	plastid	2582.9916	530.77289
[show peptides]	073	44	2.2	1	50.3	53.7	47	-0.357	AT1G20010.1	TUB5, tubulin beta-5 chain	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2582.9916	530.77289
[show peptides]	073	39	1.8	1	79.9	53.7	47	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2582.9916	530.77289
[show peptides]	073	34	1.5	2	102.1	53.7	47	-0.512	AT5G03640.1	Protein kinase superfamily protein (AT5G03640.1)	protein modification	V) protein folding & processing	plastid new	2582.9916	530.77289
[show peptides]	074	1282	42.7	22	53.3	53.7	33	-0.278	AT5G41670.1	6-phosphogluconate dehydrogenase family protein (AT5G41670.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79078	530.82391
[show peptides]	074	1098	39.0	17	53.3	53.7	33	-0.272	AT1G64190.1	6-phosphogluconate dehydrogenase family protein (AT1G64190.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2693.79078	530.82391
[show peptides]	074	738	27.8	15	51.8	53.7	33	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	721	27.6	16	51.9	53.7	33	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2693.79078	530.82391
[show peptides]	074	602	20.5	11	58.3	53.7	33	-0.135	AT5G35360.1	CAC2, acetyl Co-enzyme a carboxylase biotin carboxylase subunit	fatty acid metabolism	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	538	19.2	14	58.5	53.7	33	-0.262	AT4G23100.1	RML1, PAD2, GSH1, CAD2, ATECS1, GSHA, glutamate-cysteine ligase	antioxidants	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	354	19.8	9	54.1	53.7	33	-0.137	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	285	12.0	5	56.1	53.7	33	-0.317	AT4G33510.1	DHS2, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase	amino acid metabolism	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	269	20.0	6	28.0	53.7	33	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2693.79078	530.82391
[show peptides]	074	240	27.7	6	27.6	53.7	33	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	230	11.4	5	52.9	53.7	33	-0.114	AT3G57610.1	ADSS, adenylosuccinate synthase	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2693.79078	530.82391
[show peptides]	074	228	8.9	4	57.0	53.7	33	-0.074	AT5G08740.1	Ndc1, NAD(P)H dehydrogenase C1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79078	530.82391
[show peptides]	074	200	10.0	4	55.0	53.7	33	-0.170	AT4G13430.1	IIL1, ATLEUC1, isopropyl malate isomerase large subunit 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	177	8.6	4	57.6	53.7	33	-0.174	AT5G19220.1	ADG2, APL1, ADP glucose pyrophosphorylase large subunit 1	starch metabolism	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	149	7.5	3	55.3	53.7	33	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2693.79078	530.82391
[show peptides]	074	131	5.8	3	49.8	53.7	33	-0.237	AT2G44640.1	AT2G44640.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2693.79078	530.82391
[show peptides]	074	123	3.8	2	58.5	53.7	33	-0.090	AT5G57030.1	LUT2, Lycopene beta/epsilon cyclase protein	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	116	7.4	3	51.6	53.7	33	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2693.79078	530.82391
[show peptides]	074	98	3.3	2	57.5	53.7	33	-0.274	AT5G14260.1	Rubisco methyltransferase family protein (AT5G14260.1)	other proteins	II) carbon fixation	plastid	2693.79078	530.82391
[show peptides]	074	82	8.5	3	50.1	53.7	33	-0.001	AT3G48730.1	GSA2, glutamate-1-semialdehyde 2,1-aminomutase 2	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	72	6.7	2	28.2	53.7	33	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2693.79078	530.82391
[show peptides]	074	63	5.0	2	54.6	53.7	33	-0.193	AT1G14030.1	Rubisco methyltransferase family protein (AT1G14030.1)	other proteins	II) carbon fixation	plastid	2693.79078	530.82391
[show peptides]	074	46	7.5	2	30.1	53.7	33	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2693.79078	530.82391
[show peptides]	074	43	3.4	2	79.9	53.7	33	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2693.79078	530.82391
[show peptides]	074	42	3.0	1	55.1	53.7	33	-0.166	AT5G23010.1	MAM1, IMS3, methylthioalkylmalate synthase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2693.79078	530.82391
[show peptides]	074	37	3.7	2	49.2	53.7	33	-0.283	AT2G34650.1	PID, ABR, Protein kinase superfamily protein	protein modification	V) protein folding & processing	cytosol	2693.79078	530.82391
[show peptides]	074	36	2.9	1	54.7	53.7	33	-0.409	AT4G32770.1	VTE1, ATSDX1, tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defect	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2693.79078	530.82391
[show peptides]	074	36	0.7	2	290.2	53.7	33	-0.464	AT5G49680.2	Golgi-body localisation protein domain; RNA pol II promoter Fmp27 protein domain	protein biosynthesis	IV) nucleic acid biosynthesis & processing	extracellular	2693.79078	530.82391
[show peptides]	075	2714	74.5	52	53.9	53.1	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	536.92215
[show peptides]	075	1448	36.5	21	55.3	53.1	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	536.92215
[show peptides]	075	73	3.5	2	59.7	53.1	300	-0.150	AT4G18440.1	L-Aspartase-like family protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1562.90571	536.92215
[show peptides]	076	498	19.5	10	51.6	50.9	110	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2217.56062	562.00647
[show peptides]	076	413	17.9	8	51.9	50.9	110	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2217.56062	562.00647
[show peptides]	076	88	10.9	2	27.5	50.9	110	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2217.56062	562.00647
[show peptides]	077	852	25.8	18	51.0	51.2	1700	-0.238	AT1G15980.1	PnsB1	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	558.44917
[show peptides]	077	213	5.5	3	51.6	51.2	1700	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	303.55873	558.44917
[show peptides]	077	35	1.7	1	55.6	51.2	1700	-0.345	AT4G20130.1	pTAC14, plastid transcriptionally active 14	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.55873	558.44917
[show peptides]	078	749	25.8	17	56.0	46.6	1000	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	725.80741	616.45031
[show peptides]	078	260	9.9	5	51.8	46.6	1000	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	725.80741	616.45031
[show peptides]	078	111	12.0	3	28.2	46.6	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.80741	616.45031
[show peptides]	078	37	3.3	1	47.4	46.6	1000	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	725.80741	616.45031
[show peptides]	079	639	19.1	14	56.0	46.8	830	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	829.76771	613.2536
[show peptides]	079	285	9.9	5	51.8	46.8	830	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	829.76771	613.2536
[show peptides]	079	124	3.6	2	62.0	46.8	830	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	829.76771	613.2536
[show peptides]	079	77	5.1	2	47.4	46.8	830	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	829.76771	613.2536
[show peptides]	079	45	1.9	1	51.9	46.8	830	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	829.76771	613.2536
[show peptides]	080	455	18.2	11	51.0	51.3	1500	-0.238	AT1G15980.1	PnsB1	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	556.82123
[show peptides]	080	43	2.9	1	51.6	51.3	1500	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	419.62125	556.82123
[show peptides]	081	975	27.0	23	56.0	46.8	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	081	358	11.0	7	51.8	46.8	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	081	211	11.3	5	52.9	46.8	560	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1106.40251	614.2182
[show peptides]	081	196	10.8	4	39.5	46.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	081	180	10.1	4	55.3	46.8	560	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	081	138	8.2	3	53.9	46.8	560	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	081	103	2.7	2	82.4	46.8	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	081	87	5.1	2	38.9	46.8	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	081	48	3.3	1	47.4	46.8	560	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1106.40251	614.2182
[show peptides]	081	43	0.8	2	85.9	46.8	560	-0.329	AT3G53760.1	GCP4, ATGCP4, GAMMA-TUBULIN COMPLEX PROTEIN 4	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1106.40251	614.2182
[show peptides]	081	39	3.2	1	27.9	46.8	560	-0.169	AT5G36970.1	NHL25, NDR1/HIN1-like 25	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1106.40251	614.2182
[show peptides]	081	35	1.3	1	83.2	46.8	560	0.252	ATCG00350.1	PsaA	a) photosystem I	I) photophosphorylation	plastid	1106.40251	614.2182
[show peptides]	082	2068	62.9	45	51.9	50.3	74	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2415.32846	569.17607
[show peptides]	082	1400	41.6	21	51.6	50.3	74	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2415.32846	569.17607
[show peptides]	082	680	26.4	11	50.1	50.3	74	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2415.32846	569.17607
[show peptides]	082	599	21.1	9	49.9	50.3	74	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Isoform 1)	calvin cycle	II) carbon fixation	plastid	2415.32846	569.17607
[show peptides]	082	387	19.2	10	51.4	50.3	74	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2415.32846	569.17607
[show peptides]	082	263	12.3	6	79.9	50.3	74	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2415.32846	569.17607
[show peptides]	082	235	10.3	4	51.9	50.3	74	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2415.32846	569.17607
[show peptides]	082	164	6.6	5	52.1	50.3	74	-0.310	AT5G43780.1	APS4, Pseudouridine synthase/archaeosine transglycosylase-like family protein	sulfur metabolism	VI) other metabolic pathways	plastid	2415.32846	569.17607
[show peptides]	082	144	15.6	5	50.2	50.3	74	-0.377	AT3G04550.1	AT3G04550.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2415.32846	569.17607
[show peptides]	082	134	7.2	3	47.4	50.3	74	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2415.32846	569.17607
[show peptides]	082	115	5.3	2	42.5	50.3	74	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2415.32846	569.17607
[show peptides]	082	110	4.2	3	64.7	50.3	74	0.470	AT3G26570.1	PHT2;1, ORF02, phosphate transporter 2;1	other transporters	III) transport	plastid	2415.32846	569.17607
[show peptides]	082	93	5.7	2	50.7	50.3	74	-0.350	AT1G02910.1	LPA1, tetratricopeptide repeat (TPR)-containing protein	g) auxiliary proteins	I) photophosphorylation	plastid	2415.32846	569.17607
[show peptides]	082	75	3.4	1	51.8	50.3	74	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2415.32846	569.17607
[show peptides]	082	72	6.0	2	28.6	50.3	74	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2415.32846	569.17607
[show peptides]	082	70	5.7	2	50.4	50.3	74	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.32846	569.17607
[show peptides]	082	68	2.7	1	53.1	50.3	74	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2415.32846	569.17607
[show peptides]	082	62	3.5	1	48.2	50.3	74	-0.290	AT5G28500.1	AT5G28500.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2415.32846	569.17607
[show peptides]	082	52	2.4	1	53.8	50.3	74	-0.198	AT4G24830.1	Arginosuccinate synthase family	amino acid metabolism	VI) other metabolic pathways	plastid	2415.32846	569.17607
[show peptides]	082	51	2.2	1	56.0	50.3	74	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2415.32846	569.17607
[show peptides]	083	2238	63.1	53	51.9	50.1	50	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2562.91001	570.64064
[show peptides]	083	1154	39.9	22	51.6	50.1	50	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2562.91001	570.64064
[show peptides]	083	655	28.7	11	50.1	50.1	50	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2562.91001	570.64064
[show peptides]	083	525	21.1	8	49.9	50.1	50	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Isoform 1)	calvin cycle	II) carbon fixation	plastid	2562.91001	570.64064
[show peptides]	083	418	17.7	8	48.9	50.1	50	-0.010	AT5G63890.1	AtHDH, HISN8, HDH, histidinol dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91001	570.64064
[show peptides]	083	380	15.7	7	51.9	50.1	50	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2562.91001	570.64064
[show peptides]	083	355	17.2	8	53.1	50.1	50	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91001	570.64064
[show peptides]	083	325	11.2	7	51.4	50.1	50	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2562.91001	570.64064
[show peptides]	083	115	7.2	3	50.4	50.1	50	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I	fatty acid metabolism	VI) other metabolic pathways	plastid	2562.91001	570.64064
[show peptides]	083	92	6.7	2	50.4	50.1	50	-0.159	AT4G33680.1	AGD2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2562.91001	570.64064
[show peptides]	083	89	5.7	2	50.7	50.1	50	-0.350	AT1G02910.1	LPA1, tetratricopeptide repeat (TPR)-containing protein	g) auxiliary proteins	I) photophosphorylation	plastid	2562.91001	570.64064
[show peptides]	083	63	2.7	1	54.2	50.1	50	-0.215	AT5G14590.1	Isocitrate/isopropylmalate dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2562.91001	570.64064
[show peptides]	083	59	3.4	2	54.9	50.1	50	-0.073	AT5G01920.1	STN8, Protein kinase superfamily protein	g) auxiliary proteins	I) photophosphorylation	plastid	2562.91001	570.64064
[show peptides]	083	59	5.1	2	47.4	50.1	50	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2562.91001	570.64064
[show peptides]	083	53	2.5	1	51.6	50.1	50	-0.226	AT4G27070.1	TSB2, tryptophan synthase beta-subunit 2	amino acid metabolism	VI) other metabolic pathways	plastid	2562.91001	570.64064
[show peptides]	083	35	0.5	2	314.9	50.1	50	-0.590	AT3G19050.1	POK2, phragmoplast orienting kinesin 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	2562.91001	570.64064
[show peptides]	084	1854	57.6	45	51.9	49.9	24	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2781.60628	573.61224
[show peptides]	084	864	37.8	19	51.6	49.9	24	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.60628	573.61224
[show peptides]	084	701	26.6	10	50.3	49.9	24	0.011	AT5G63570.1	GSA1, glutamate-1-semialdehyde-2,1-aminomutase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2781.60628	573.61224
[show peptides]	084	668	26.0	11	50.1	49.9	24	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2781.60628	573.61224
[show peptides]	084	665	22.7	9	50.1	49.9	24	-0.001	AT3G48730.1	GSA2, glutamate-1-semialdehyde 2,1-aminomutase 2	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2781.60628	573.61224
[show peptides]	084	611	25.2	11	52.2	49.9	24	0.006	AT3G09580.1	FAD/NAD(P)-binding oxidoreductase family protein (AT3G09580.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.60628	573.61224
[show peptides]	084	511	18.4	7	49.9	49.9	24	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Isoform 1)	calvin cycle	II) carbon fixation	plastid	2781.60628	573.61224
[show peptides]	084	331	17.5	7	52.5	49.9	24	-0.095	AT1G63940.1	MDAR6, monodehydroascorbate reductase 6	antioxidants	VI) other metabolic pathways	plastid	2781.60628	573.61224
[show peptides]	084	276	17.3	9	51.4	49.9	24	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2781.60628	573.61224
[show peptides]	084	273	10.5	5	47.4	49.9	24	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2781.60628	573.61224
[show peptides]	084	130	6.0	3	50.5	49.9	24	0.006	AT1G08490.1	ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS, chloroplastic NIFS-like cysteine desulfurase	amino acid metabolism	VI) other metabolic pathways	plastid	2781.60628	573.61224
[show peptides]	084	112	4.7	2	50.9	49.9	24	-0.205	AT5G54810.1	TSB1, TRPB, TRP2, ATTSB1, tryptophan synthase beta-subunit 1	amino acid metabolism	VI) other metabolic pathways	plastid	2781.60628	573.61224
[show peptides]	084	110	5.1	2	46.5	49.9	24	-0.057	AT1G50450.1	Saccharopine dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2781.60628	573.61224
[show peptides]	084	85	5.2	2	51.9	49.9	24	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.60628	573.61224
[show peptides]	084	78	3.3	1	50.7	49.9	24	-0.091	AT2G36250.1	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2781.60628	573.61224
[show peptides]	084	65	3.1	1	50.9	49.9	24	-0.365	AT5G36170.1	HCF109, ATPRFB, high chlorophyll fluorescent 109	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2781.60628	573.61224
[show peptides]	084	38	3.9	1	27.5	49.9	24	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2781.60628	573.61224
[show peptides]	085	625	22.0	16	56.0	46.6	700	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	951.78752	615.85259
[show peptides]	085	218	8.2	4	51.8	46.6	700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	951.78752	615.85259
[show peptides]	085	207	8.4	5	47.4	46.6	700	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	951.78752	615.85259
[show peptides]	085	34	1.2	2	196.9	46.6	700	-0.763	AT4G14760.1	Kinase interacting (KIP1-like) family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	951.78752	615.85259
[show peptides]	086	1126	39.7	23	51.6	50.3	190	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1888.90872	569.28194
[show peptides]	086	961	39.2	22	51.9	50.3	190	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1888.90872	569.28194
[show peptides]	086	337	10.9	6	53.8	50.3	190	-0.198	AT4G24830.1	Arginosuccinate synthase family	amino acid metabolism	VI) other metabolic pathways	plastid	1888.90872	569.28194
[show peptides]	086	333	14.2	7	59.9	50.3	190	0.131	AT3G01120.1	MTO1, CGS, ATCYS1, CGS1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	sulfur metabolism	VI) other metabolic pathways	plastid	1888.90872	569.28194
[show peptides]	086	283	16.8	7	50.1	50.3	190	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1888.90872	569.28194
[show peptides]	086	153	5.5	3	56.0	50.3	190	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1888.90872	569.28194
[show peptides]	086	51	2.8	1	51.8	50.3	190	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1888.90872	569.28194
[show peptides]	086	38	1.6	1	56.8	50.3	190	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1888.90872	569.28194
[show peptides]	087	1341	43.0	27	51.9	50.3	150	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2070.63966	568.46659
[show peptides]	087	1246	41.8	22	51.6	50.3	150	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2070.63966	568.46659
[show peptides]	087	464	19.3	8	50.1	50.3	150	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2070.63966	568.46659
[show peptides]	087	254	14.0	5	53.1	50.3	150	-0.269	AT4G33030.1	SQD1, sulfoquinovosyldiacylglycerol 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2070.63966	568.46659
[show peptides]	087	153	6.1	3	53.8	50.3	150	-0.198	AT4G24830.1	Arginosuccinate synthase family	amino acid metabolism	VI) other metabolic pathways	plastid	2070.63966	568.46659
[show peptides]	087	119	8.0	4	50.2	50.3	150	-0.377	AT3G04550.1	AT3G04550.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2070.63966	568.46659
[show peptides]	087	109	4.3	2	51.8	50.3	150	-0.357	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2070.63966	568.46659
[show peptides]	087	67	5.1	2	47.4	50.3	150	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2070.63966	568.46659
[show peptides]	087	66	5.1	2	55.3	50.3	150	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2070.63966	568.46659
[show peptides]	087	57	2.6	1	56.0	50.3	150	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2070.63966	568.46659
[show peptides]	087	33	2.9	2	31.4	50.3	150	-0.976	AT3G30210.1	ATMYB121, MYB121, myb domain protein 121	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	2070.63966	568.46659
[show peptides]	088	958	32.7	17	52.5	49.7	16	-0.095	AT1G63940.1	MDAR6, monodehydroascorbate reductase 6	antioxidants	VI) other metabolic pathways	plastid	2887.79291	576.49207
[show peptides]	088	928	42.4	20	51.6	49.7	16	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2887.79291	576.49207
[show peptides]	088	682	26.6	13	51.9	49.7	16	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2887.79291	576.49207
[show peptides]	088	371	19.9	9	51.4	49.7	16	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2887.79291	576.49207
[show peptides]	088	262	12.3	6	47.4	49.7	16	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2887.79291	576.49207
[show peptides]	088	146	6.9	3	49.4	49.7	16	-0.172	AT4G01050.1	TROL, thylakoid rhodanese-like	g) auxiliary proteins	I) photophosphorylation	plastid	2887.79291	576.49207
[show peptides]	088	105	3.3	2	50.7	49.7	16	-0.091	AT2G36250.1	FTSZ2-1, ATFTSZ2-1, Tubulin/FtsZ family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2887.79291	576.49207
[show peptides]	088	87	5.5	2	50.4	49.7	16	-0.155	AT5G46290.1	KASI, KAS1, 3-ketoacyl-acyl carrier protein synthase I	fatty acid metabolism	VI) other metabolic pathways	plastid	2887.79291	576.49207
[show peptides]	088	74	9.4	3	51.9	49.7	16	-0.086	AT5G62790.1	DXR, PDE129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2887.79291	576.49207
[show peptides]	088	45	4.7	1	24.1	49.7	16	-0.902	AT4G31460.1	Rpl28, Ribosomal L28 family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	mitochondrion	2887.79291	576.49207
[show peptides]	088	42	3.1	1	50.4	49.7	16	-0.252	AT1G32200.1	ATS1, ACT1, phospholipid/glycerol acyltransferase family protein	fatty acid metabolism	VI) other metabolic pathways	plastid	2887.79291	576.49207
[show peptides]	089	428	14.2	10	56.0	46.3	1150	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	616.05666	619.90348
[show peptides]	089	158	7.0	3	51.8	46.3	1150	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	616.05666	619.90348
[show peptides]	089	66	3.8	2	45.5	46.3	1150	-0.154	ATCG01110.1	NdhH	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	616.05666	619.90348
[show peptides]	089	34	2.2	1	40.8	46.3	1150	-0.253	AT2G37560.1	ORC2, ATORC2, origin recognition complex second largest subunit 2	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	616.05666	619.90348
[show peptides]	090	99	4.7	2	56.0	46.5	500	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1194.33424	617.09054
[show peptides]	090	99	3.4	1	51.8	46.5	500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1194.33424	617.09054
[show peptides]	090	92	5.3	2	47.4	46.5	500	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1194.33424	617.09054
[show peptides]	090	37	2.1	2	38.4	46.5	500	-0.123	AT2G25910.1	3`-5` exonuclease domain-containing protein, K homology domain-containing protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	1194.33424	617.09054
[show peptides]	091	1729	41.2	23	50.1	48.1	110	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2230.1124	596.5012
[show peptides]	091	1346	38.8	26	51.9	48.1	110	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2230.1124	596.5012
[show peptides]	091	1198	36.0	15	42.6	48.1	110	0.172	AT1G56190	Phosphoglycerate kinase family protein	calvin cycle	II) carbon fixation	plastid new	2230.1124	596.5012
[show peptides]	091	963	36.2	16	43.0	48.1	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2230.1124	596.5012
[show peptides]	091	728	28.3	11	42.9	48.1	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2230.1124	596.5012
[show peptides]	091	634	22.8	11	47.4	48.1	110	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2230.1124	596.5012
[show peptides]	091	218	11.2	4	28.2	48.1	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2230.1124	596.5012
[show peptides]	091	211	15.1	5	28.6	48.1	110	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2230.1124	596.5012
[show peptides]	091	204	13.4	5	47.6	48.1	110	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2230.1124	596.5012
[show peptides]	091	95	5.0	2	45.1	48.1	110	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2230.1124	596.5012
[show peptides]	091	78	5.8	2	42.5	48.1	110	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2230.1124	596.5012
[show peptides]	091	60	3.1	1	50.2	48.1	110	-0.331	AT1G15730.1	Cobalamin biosynthesis CobW-like protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2230.1124	596.5012
[show peptides]	091	58	7.0	2	48.3	48.1	110	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2230.1124	596.5012
[show peptides]	092	1471	33.1	28	56.0	46.8	260	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1669.28958	613.84806
[show peptides]	092	755	25.8	14	47.4	46.8	260	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1669.28958	613.84806
[show peptides]	092	530	19.5	11	51.8	46.8	260	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1669.28958	613.84806
[show peptides]	092	328	21.6	7	50.1	46.8	260	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1669.28958	613.84806
[show peptides]	092	246	13.5	6	46.7	46.8	260	-0.221	AT1G69740.1	HEMB1, Aldolase superfamily protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1669.28958	613.84806
[show peptides]	092	221	10.8	4	39.5	46.8	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.28958	613.84806
[show peptides]	092	215	9.1	4	51.9	46.8	260	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1669.28958	613.84806
[show peptides]	092	141	8.8	2	35.3	46.8	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.28958	613.84806
[show peptides]	092	95	5.6	2	47.6	46.8	260	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	1669.28958	613.84806
[show peptides]	092	40	1.4	2	87.4	46.8	260	-0.689	AT3G06980.1	DEA(D/H)-box RNA helicase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	1669.28958	613.84806
[show peptides]	092	36	0.8	2	85.9	46.8	260	-0.329	AT3G53760.1	GCP4, ATGCP4, GAMMA-TUBULIN COMPLEX PROTEIN 4	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1669.28958	613.84806
[show peptides]	092	34	1.2	1	73.0	46.8	260	-0.395	AT5G43390.1	AT5G43390.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1669.28958	613.84806
[show peptides]	093	524	25.7	15	45.5	46.0	1700	-0.154	ATCG01110.1	NdhH	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	624.0517
[show peptides]	093	86	3.4	1	51.8	46.0	1700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	303.55873	624.0517
[show peptides]	093	51	2.2	1	56.0	46.0	1700	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	303.55873	624.0517
[show peptides]	094	435	20.4	12	45.5	46.2	1500	-0.154	ATCG01110.1	NdhH	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	622.39293
[show peptides]	094	98	5.1	2	51.8	46.2	1500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	419.62125	622.39293
[show peptides]	094	57	1.6	1	56.0	46.2	1500	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	419.62125	622.39293
[show peptides]	095	441	16.6	7	50.1	47.7	150	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2077.40641	601.19641
[show peptides]	095	367	14.2	6	38.9	47.7	150	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2077.40641	601.19641
[show peptides]	095	227	19.0	5	31.1	47.7	150	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2077.40641	601.19641
[show peptides]	095	180	21.6	5	31.2	47.7	150	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2077.40641	601.19641
[show peptides]	095	180	8.2	4	51.9	47.7	150	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2077.40641	601.19641
[show peptides]	095	129	11.2	3	28.2	47.7	150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2077.40641	601.19641
[show peptides]	095	38	1.6	1	56.8	47.7	150	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2077.40641	601.19641
[show peptides]	095	38	3.3	1	47.4	47.7	150	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2077.40641	601.19641
[show peptides]	095	36	1.9	1	46.7	47.7	150	0.036	AT5G47950.1	HXXXD-type acyl-transferase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2077.40641	601.19641
[show peptides]	096	1897	45.7	24	50.1	47.8	79	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2388.59589	600.76666
[show peptides]	096	1692	54.4	39	51.9	47.8	79	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2388.59589	600.76666
[show peptides]	096	1307	45.9	17	42.6	47.8	79	0.172	AT1G56190	Phosphoglycerate kinase family protein	calvin cycle	II) carbon fixation	plastid new	2388.59589	600.76666
[show peptides]	096	625	29.5	12	47.4	47.8	79	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2388.59589	600.76666
[show peptides]	096	530	23.7	8	45.1	47.8	79	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1	g) auxiliary proteins	I) photophosphorylation	plastid	2388.59589	600.76666
[show peptides]	096	486	22.5	9	49.8	47.8	79	-0.149	AT4G31990.1	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5	amino acid metabolism	VI) other metabolic pathways	plastid	2388.59589	600.76666
[show peptides]	096	173	7.2	3	45.1	47.8	79	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2388.59589	600.76666
[show peptides]	096	129	13.3	4	42.8	47.8	79	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2388.59589	600.76666
[show peptides]	096	115	6.9	3	50.2	47.8	79	-0.125	AT2G28800.1	ALB3, 63 kDa inner membrane family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2388.59589	600.76666
[show peptides]	096	112	8.5	3	56.0	47.8	79	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2388.59589	600.76666
[show peptides]	096	108	6.8	3	48.3	47.8	79	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.59589	600.76666
[show peptides]	096	65	2.5	1	48.3	47.8	79	-0.376	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G73110.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2388.59589	600.76666
[show peptides]	096	64	1.2	2	118.7	47.8	79	0.062	AT3G21180.1	ACA9, ATACA9, autoinhibited Ca(2+)-ATPase 9	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2388.59589	600.76666
[show peptides]	096	53	4.9	2	60.0	47.8	79	0.215	AT5G05740.1	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2	proteases	V) protein folding & processing	plastid	2388.59589	600.76666
[show peptides]	096	53	3.1	1	50.2	47.8	79	-0.331	AT1G15730.1	Cobalamin biosynthesis CobW-like protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.59589	600.76666
[show peptides]	096	48	1.9	1	50.3	47.8	79	-0.060	AT3G52750.1	FTSZ2-2, Tubulin/FtsZ family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2388.59589	600.76666
[show peptides]	096	47	4.7	1	44.4	47.8	79	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2388.59589	600.76666
[show peptides]	096	44	2.8	1	49.2	47.8	79	-0.343	AT3G58140.1	Phenylalanyl-tRNA synthetase class IIc family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2388.59589	600.76666
[show peptides]	097	1469	45.3	21	50.1	47.0	200	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1858.0481	611.13585
[show peptides]	097	1226	30.7	23	56.0	47.0	200	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1858.0481	611.13585
[show peptides]	097	1173	39.7	26	51.9	47.0	200	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1858.0481	611.13585
[show peptides]	097	804	28.4	11	42.6	47.0	200	0.172	AT1G56190	Phosphoglycerate kinase family protein	calvin cycle	II) carbon fixation	plastid new	1858.0481	611.13585
[show peptides]	097	676	20.2	12	47.4	47.0	200	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1858.0481	611.13585
[show peptides]	097	116	7.2	3	45.1	47.0	200	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1858.0481	611.13585
[show peptides]	097	110	8.2	3	51.6	47.0	200	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1858.0481	611.13585
[show peptides]	097	104	6.9	3	50.2	47.0	200	-0.125	AT2G28800.1	ALB3, 63 kDa inner membrane family protein	g) auxiliary proteins	I) photophosphorylation	plastid	1858.0481	611.13585
[show peptides]	097	77	7.0	2	27.5	47.0	200	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1858.0481	611.13585
[show peptides]	097	60	2.8	1	41.3	47.0	200	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1858.0481	611.13585
[show peptides]	097	53	3.2	1	47.7	47.0	200	-0.442	AT2G22360.1	DNAJ heat shock family protein	other HSP	V) protein folding & processing	plastid	1858.0481	611.13585
[show peptides]	097	41	1.6	1	56.8	47.0	200	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1858.0481	611.13585
[show peptides]	097	35	3.3	1	23.8	47.0	200	-0.120	AT2G45360.1	AT2G45360.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1858.0481	611.13585
[show peptides]	098	2139	64.7	31	50.1	47.5	66	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2459.4844	604.5662
[show peptides]	098	1637	54.9	42	51.9	47.5	66	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2459.4844	604.5662
[show peptides]	098	1598	62.5	22	42.6	47.5	66	0.172	AT1G56190	Phosphoglycerate kinase family protein	calvin cycle	II) carbon fixation	plastid new	2459.4844	604.5662
[show peptides]	098	1325	45.7	24	49.8	47.5	66	-0.149	AT4G31990.1	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5	amino acid metabolism	VI) other metabolic pathways	plastid	2459.4844	604.5662
[show peptides]	098	504	33.5	11	47.4	47.5	66	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2459.4844	604.5662
[show peptides]	098	245	7.7	4	56.0	47.5	66	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	2459.4844	604.5662
[show peptides]	098	171	9.5	3	50.4	47.5	66	-0.159	AT4G33680.1	AGD2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2459.4844	604.5662
[show peptides]	098	168	15.7	4	42.1	47.5	66	0.134	AT1G79550.1	PGK, phosphoglycerate kinase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2459.4844	604.5662
[show peptides]	098	96	7.4	3	51.8	47.5	66	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2459.4844	604.5662
[show peptides]	098	65	2.5	1	48.3	47.5	66	-0.376	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G73110.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2459.4844	604.5662
[show peptides]	098	54	1.4	1	60.0	47.5	66	0.215	AT5G05740.1	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2	proteases	V) protein folding & processing	plastid	2459.4844	604.5662
[show peptides]	098	50	3.6	1	48.3	47.5	66	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2459.4844	604.5662
[show peptides]	098	42	2.9	1	45.1	47.5	66	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1	g) auxiliary proteins	I) photophosphorylation	plastid	2459.4844	604.5662
[show peptides]	098	42	3.3	1	49.9	47.5	66	-0.074	AT1G26090.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G26090.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2459.4844	604.5662
[show peptides]	098	39	2.4	1	45.1	47.5	66	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2459.4844	604.5662
[show peptides]	098	35	2.8	1	50.2	47.5	66	-0.125	AT2G28800.1	ALB3, 63 kDa inner membrane family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2459.4844	604.5662
[show peptides]	099	1935	47.4	27	50.1	47.6	47	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2579.20539	603.42459
[show peptides]	099	1718	55.5	42	51.9	47.6	47	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2579.20539	603.42459
[show peptides]	099	1317	47.7	18	42.6	47.6	47	0.172	AT1G56190	Phosphoglycerate kinase family protein	calvin cycle	II) carbon fixation	plastid new	2579.20539	603.42459
[show peptides]	099	1123	40.6	20	49.3	47.6	47	-0.138	AT4G31990	ASP5, aspartate aminotransferase 5	amino acid metabolism	VI) other metabolic pathways	plastid	2579.20539	603.42459
[show peptides]	099	860	29.9	13	50.4	47.6	47	-0.159	AT4G33680.1	AGD2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2579.20539	603.42459
[show peptides]	099	373	17.4	9	47.4	47.6	47	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2579.20539	603.42459
[show peptides]	099	208	8.6	3	48.3	47.6	47	-0.376	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT1G73110.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2579.20539	603.42459
[show peptides]	099	145	6.3	3	60.0	47.6	47	0.215	AT5G05740.1	ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2	proteases	V) protein folding & processing	plastid	2579.20539	603.42459
[show peptides]	099	116	3.4	2	59.8	47.6	47	0.549	AT5G59250.1	Major facilitator superfamily protein	other transporters	III) transport	plastid	2579.20539	603.42459
[show peptides]	099	107	7.0	3	48.3	47.6	47	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2579.20539	603.42459
[show peptides]	099	84	4.6	2	45.1	47.6	47	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2579.20539	603.42459
[show peptides]	099	62	3.4	2	51.8	47.6	47	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2579.20539	603.42459
[show peptides]	099	57	4.7	1	44.4	47.6	47	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2579.20539	603.42459
[show peptides]	099	50	3.2	2	49.2	47.6	47	-0.234	AT1G67070.1	DIN9, PMI2, Mannose-6-phosphate isomerase, type I	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2579.20539	603.42459
[show peptides]	099	48	5.8	2	50.2	47.6	47	-0.125	AT2G28800.1	ALB3, 63 kDa inner membrane family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2579.20539	603.42459
[show peptides]	099	40	1.0	1	111.6	47.6	47	-0.636	AT3G45780.1	PHOT1, NPH1, JK224, RPT1, phototropin 1	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plasma membrane	2579.20539	603.42459
[show peptides]	100	741	24.7	13	51.9	46.6	22	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2808.62193	615.7182
[show peptides]	100	302	18.1	7	47.4	46.6	22	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2808.62193	615.7182
[show peptides]	100	194	9.1	4	50.1	46.6	22	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2808.62193	615.7182
[show peptides]	100	130	5.4	2	43.8	46.6	22	-0.094	AT1G31180.1	ATIMD3, IMD3, IPMDH1, isopropylmalate dehydrogenase 3	amino acid metabolism	VI) other metabolic pathways	plastid	2808.62193	615.7182
[show peptides]	100	51	2.4	1	46.4	46.6	22	-0.282	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein (AT1G04420.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2808.62193	615.7182
[show peptides]	101	1703	54.4	49	51.9	46.5	16	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2885.79291	617.47795
[show peptides]	101	766	35.0	13	47.6	46.5	16	-0.348	AT3G56940.1	CRD1, CHL27, ACSF, dicarboxylate diiron protein, putative	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2885.79291	617.47795
[show peptides]	101	586	23.5	11	48.3	46.5	16	-0.170	AT5G58330.1	Lactate/malate dehydrogenase family protein (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79291	617.47795
[show peptides]	101	568	16.3	12	102.0	46.5	16	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79291	617.47795
[show peptides]	101	474	21.8	8	50.1	46.5	16	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2885.79291	617.47795
[show peptides]	101	453	25.7	9	46.4	46.5	16	-0.282	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein (AT1G04420.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79291	617.47795
[show peptides]	101	303	21.2	8	47.4	46.5	16	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2885.79291	617.47795
[show peptides]	101	265	11.5	4	44.1	46.5	16	-0.057	AT5G14200.1	ATIMD1, IMD1, isopropylmalate dehydrogenase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2885.79291	617.47795
[show peptides]	101	217	11.8	4	44.4	46.5	16	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2885.79291	617.47795
[show peptides]	101	205	12.8	4	47.3	46.5	16	-0.229	AT4G35630.1	PSAT, phosphoserine aminotransferase	amino acid metabolism	VI) other metabolic pathways	plastid	2885.79291	617.47795
[show peptides]	101	200	7.2	3	45.1	46.5	16	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2885.79291	617.47795
[show peptides]	101	91	8.9	2	44.4	46.5	16	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2885.79291	617.47795
[show peptides]	101	78	6.2	2	42.2	46.5	16	-0.044	AT1G68010.1	HPR, ATHPR1, hydroxypyruvate reductase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2885.79291	617.47795
[show peptides]	101	40	2.5	1	47.0	46.5	16	0.070	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79291	617.47795
[show peptides]	101	36	2.0	1	48.8	46.5	16	0.122	AT1G80600.1	WIN1, HOPW1-1-interacting 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2885.79291	617.47795
[show peptides]	102	1427	41.5	23	43.0	43.8	120	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2190.99598	657.76947
[show peptides]	102	1259	39.8	19	42.9	43.8	120	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2190.99598	657.76947
[show peptides]	102	712	28.4	12	47.6	43.8	120	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2190.99598	657.76947
[show peptides]	102	315	18.7	7	42.5	43.8	120	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2190.99598	657.76947
[show peptides]	102	291	12.0	5	28.2	43.8	120	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2190.99598	657.76947
[show peptides]	102	274	7.7	4	42.3	43.8	120	-0.249	AT2G01140.1	Aldolase superfamily protein (AT2G01140.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2190.99598	657.76947
[show peptides]	102	236	8.8	5	59.2	43.8	120	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1	other transporters	III) transport	plastid	2190.99598	657.76947
[show peptides]	102	225	12.1	4	28.6	43.8	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2190.99598	657.76947
[show peptides]	102	109	3.4	1	51.8	43.8	120	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2190.99598	657.76947
[show peptides]	102	61	2.3	1	51.9	43.8	120	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2190.99598	657.76947
[show peptides]	102	53	2.4	1	44.7	43.8	120	-0.031	AT1G09795.1	ATATP-PRT2, HISN1B, ATP-PRT2, ATP phosphoribosyl transferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2190.99598	657.76947
[show peptides]	102	34	1.6	1	56.8	43.8	120	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2190.99598	657.76947
[show peptides]	102	34	1.0	1	57.5	43.8	120	-0.083	AT5G57260.1	CYP71B10, cytochrome P450, family 71, subfamily B, polypeptide 10	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2190.99598	657.76947
[show peptides]	103	1905	59.5	33	47.6	44.3	90	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2329.92589	648.86308
[show peptides]	103	666	32.1	14	42.5	44.3	90	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2329.92589	648.86308
[show peptides]	103	430	18.2	8	51.8	44.3	90	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2329.92589	648.86308
[show peptides]	103	271	9.8	4	43.0	44.3	90	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2329.92589	648.86308
[show peptides]	103	156	5.7	3	51.9	44.3	90	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2329.92589	648.86308
[show peptides]	103	57	2.2	1	51.1	44.3	90	-0.300	AT3G11170.1	FAD7, FADD, fatty acid desaturase 7	fatty acid metabolism	VI) other metabolic pathways	plastid	2329.92589	648.86308
[show peptides]	103	48	6.3	2	44.4	44.3	90	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2329.92589	648.86308
[show peptides]	103	48	2.5	1	40.3	44.3	90	-0.031	AT3G14415.1	Aldolase-type TIM barrel family protein (AT3G14415.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2329.92589	648.86308
[show peptides]	103	43	1.8	1	59.2	44.3	90	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1	other transporters	III) transport	plastid	2329.92589	648.86308
[show peptides]	103	37	2.4	1	44.7	44.3	90	-0.031	AT1G09795.1	ATATP-PRT2, HISN1B, ATP-PRT2, ATP phosphoribosyl transferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2329.92589	648.86308
[show peptides]	103	33	0.7	1	118.7	44.3	90	0.062	AT3G21180.1	ACA9, ATACA9, autoinhibited Ca(2+)-ATPase 9	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2329.92589	648.86308
[show peptides]	104	434	13.5	8	51.8	42.1	830	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	829.76771	683.72832
[show peptides]	105	2034	57.6	33	52.9	45.3	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	634.46586
[show peptides]	105	878	32.8	17	47.4	45.3	430	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	1357.29361	634.46586
[show peptides]	105	577	22.9	9	50.1	45.3	430	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	1357.29361	634.46586
[show peptides]	105	529	23.4	9	51.9	45.3	430	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1357.29361	634.46586
[show peptides]	105	419	12.0	8	56.0	45.3	430	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1357.29361	634.46586
[show peptides]	105	227	11.8	4	51.6	45.3	430	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1357.29361	634.46586
[show peptides]	105	176	22.1	4	20.3	45.3	430	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	1357.29361	634.46586
[show peptides]	105	88	8.1	2	45.5	45.3	430	-0.154	ATCG01110.1	NdhH	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	1357.29361	634.46586
[show peptides]	105	48	1.0	1	56.7	45.3	430	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	1357.29361	634.46586
[show peptides]	105	34	3.5	1	24.2	45.3	430	-0.220	AT5G57950.1	26S proteasome regulatory subunit, putative	proteases	V) protein folding & processing	cytosol	1357.29361	634.46586
[show peptides]	106	824	20.9	17	51.8	43.2	260	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1669.28958	666.48205
[show peptides]	106	729	25.3	12	47.6	43.2	260	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	1669.28958	666.48205
[show peptides]	106	481	19.1	13	56.0	43.2	260	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1669.28958	666.48205
[show peptides]	106	229	10.8	4	39.5	43.2	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.28958	666.48205
[show peptides]	106	129	7.8	2	35.3	43.2	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.28958	666.48205
[show peptides]	106	70	3.1	1	38.9	43.2	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1669.28958	666.48205
[show peptides]	106	34	1.8	1	44.0	43.2	260	-0.083	AT5G38570.1	F-box/RNI-like superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1669.28958	666.48205
[show peptides]	107	293	16.3	6	47.6	45.2	72	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2427.43863	635.71213
[show peptides]	107	264	15.8	5	45.1	45.2	72	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1	g) auxiliary proteins	I) photophosphorylation	plastid	2427.43863	635.71213
[show peptides]	108	867	30.0	15	47.6	44.8	55	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2528.6973	641.25966
[show peptides]	108	570	18.4	11	51.8	44.8	55	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2528.6973	641.25966
[show peptides]	108	450	19.4	10	51.9	44.8	55	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2528.6973	641.25966
[show peptides]	108	294	15.9	9	44.4	44.8	55	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2528.6973	641.25966
[show peptides]	108	281	10.1	6	60.0	44.8	55	0.608	AT5G64290.1	DiT2.1, DCT, dicarboxylate transport 2.1	other transporters	III) transport	plastid	2528.6973	641.25966
[show peptides]	108	244	12.2	4	45.1	44.8	55	-0.208	AT3G54050.1	HCEF1, high cyclic electron flow 1	g) auxiliary proteins	I) photophosphorylation	plastid	2528.6973	641.25966
[show peptides]	108	243	13.2	6	45.1	44.8	55	-0.105	AT5G30510.1	Rps1, ARRps1, Ribosomal protein S1	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2528.6973	641.25966
[show peptides]	108	203	11.7	5	49.9	44.8	55	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Isoform 1)	calvin cycle	II) carbon fixation	plastid	2528.6973	641.25966
[show peptides]	108	120	9.0	4	46.2	44.8	55	-0.223	AT4G18480.1	CHLI1, CH42, CH-42, CHL11, CHLI-1, P-loop containing nucleoside triphosphate hydrolases superfamily	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2528.6973	641.25966
[show peptides]	108	95	3.6	2	59.2	44.8	55	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1	other transporters	III) transport	plastid	2528.6973	641.25966
[show peptides]	108	80	3.6	2	59.8	44.8	55	0.549	AT5G59250.1	Major facilitator superfamily protein	other transporters	III) transport	plastid	2528.6973	641.25966
[show peptides]	108	49	6.7	2	45.7	44.8	55	-0.532	AT2G43710.1	SSI2, FAB2, Plant stearoyl-acyl-carrier-protein desaturase family protein	fatty acid metabolism	VI) other metabolic pathways	plastid	2528.6973	641.25966
[show peptides]	108	48	3.6	1	42.6	44.8	55	-0.458	AT1G78915.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G78915.1)	TPR proteins	VI) other metabolic pathways	plastid	2528.6973	641.25966
[show peptides]	108	46	2.2	1	59.5	44.8	55	0.214	AT2G18710.1	SecY-1, SCY1	protein transporters	III) transport	plastid	2528.6973	641.25966
[show peptides]	108	37	0.7	1	118.7	44.8	55	0.062	AT3G21180.1	ACA9, ATACA9, autoinhibited Ca(2+)-ATPase 9	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	2528.6973	641.25966
[show peptides]	109	967	45.3	17	44.4	44.3	28	-0.313	AT1G32060.1	PRK, phosphoribulokinase	calvin cycle	II) carbon fixation	plastid	2743.17577	649.93307
[show peptides]	109	827	19.0	17	102.0	44.3	28	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2743.17577	649.93307
[show peptides]	109	688	26.0	14	47.6	44.3	28	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2743.17577	649.93307
[show peptides]	109	205	17.5	7	46.6	44.3	28	-0.215	AT2G17630.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	amino acid metabolism	VI) other metabolic pathways	plastid	2743.17577	649.93307
[show peptides]	109	170	12.9	5	46.2	44.3	28	-0.082	AT3G14930.1	HEME1, Uroporphyrinogen decarboxylase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2743.17577	649.93307
[show peptides]	109	123	5.7	3	51.9	44.3	28	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2743.17577	649.93307
[show peptides]	109	45	4.7	2	44.0	44.3	28	-0.033	AT1G12230.1	Aldolase superfamily protein (AT1G12230.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2743.17577	649.93307
[show peptides]	109	35	3.0	1	51.8	44.3	28	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2743.17577	649.93307
[show peptides]	110	286	13.3	5	51.8	42.1	500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1194.33424	683.48549
[show peptides]	111	1426	53.4	26	52.9	43.1	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	668.32335
[show peptides]	111	487	19.2	8	47.6	43.1	430	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	1357.29361	668.32335
[show peptides]	111	145	6.3	2	51.8	43.1	430	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1357.29361	668.32335
[show peptides]	111	85	8.9	2	20.2	43.1	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	668.32335
[show peptides]	111	43	1.0	1	56.7	43.1	430	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	1357.29361	668.32335
[show peptides]	112	786	45.3	10	28.2	43.0	70	0.021	AT1G29930.1	Lhcb1.3, CAB1, AB140, CAB140	b) photosystem II	I) photophosphorylation	plastid	2441.13964	669.25885
[show peptides]	112	768	45.7	10	28.0	43.0	70	-0.006	AT2G34420.1	Lhcb1.5	b) photosystem II	I) photophosphorylation	plastid	2441.13964	669.25885
[show peptides]	112	700	45.9	9	28.2	43.0	70	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2441.13964	669.25885
[show peptides]	112	565	34.0	7	28.6	43.0	70	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2441.13964	669.25885
[show peptides]	112	520	40.0	10	29.5	43.0	70	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2441.13964	669.25885
[show peptides]	112	196	20.8	4	28.7	43.0	70	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2441.13964	669.25885
[show peptides]	112	42	9.5	1	29.2	43.0	70	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	2441.13964	669.25885
[show peptides]	112	42	1.3	2	127.2	43.0	70	-0.607	AT3G17750.1	Protein kinase superfamily protein (AT3G17750.1)	protein modification	V) protein folding & processing	nucleus	2441.13964	669.25885
[show peptides]	112	36	1.6	1	50.6	43.0	70	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	2441.13964	669.25885
[show peptides]	112	35	1.5	1	65.3	43.0	70	-0.315	AT3G22330.1	PMH2, ATRH53, putative mitochondrial RNA helicase 2	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	mitochondrion	2441.13964	669.25885
[show peptides]	112	35	1.8	2	118.9	43.0	70	-0.626	AT3G45850.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein (AT3G45850.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2441.13964	669.25885
[show peptides]	113	407	15.2	8	51.8	43.2	56	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2525.18085	666.63947
[show peptides]	113	400	11.5	7	59.2	43.2	56	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1	other transporters	III) transport	plastid	2525.18085	666.63947
[show peptides]	113	348	17.9	8	42.5	43.2	56	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2525.18085	666.63947
[show peptides]	113	207	7.6	4	51.9	43.2	56	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2525.18085	666.63947
[show peptides]	113	177	14.8	5	42.6	43.2	56	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2525.18085	666.63947
[show peptides]	113	147	8.3	4	51.0	43.2	56	-0.311	AT1G80380	Glycerate kinase	other proteins	II) carbon fixation	plastid	2525.18085	666.63947
[show peptides]	113	130	6.7	3	60.0	43.2	56	0.608	AT5G64290.1	DiT2.1, DCT, dicarboxylate transport 2.1	other transporters	III) transport	plastid	2525.18085	666.63947
[show peptides]	113	126	7.5	3	43.0	43.2	56	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2525.18085	666.63947
[show peptides]	113	116	10.5	3	43.9	43.2	56	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2525.18085	666.63947
[show peptides]	113	113	6.8	3	42.9	43.2	56	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2525.18085	666.63947
[show peptides]	113	107	6.8	3	44.9	43.2	56	-0.085	AT3G49680.1	ATBCAT-3, BCAT3, branched-chain aminotransferase 3	amino acid metabolism	VI) other metabolic pathways	plastid	2525.18085	666.63947
[show peptides]	113	88	3.4	1	42.6	43.2	56	-0.361	AT3G52180.1	ATPTPKIS1, DSP4, SEX4, ATSEX4, dual specificity protein phosphatase (DsPTP1) family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2525.18085	666.63947
[show peptides]	113	71	2.0	1	44.0	43.2	56	-0.033	AT1G12230.1	Aldolase superfamily protein (AT1G12230.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2525.18085	666.63947
[show peptides]	113	54	4.4	1	36.9	43.2	56	-0.137	AT1G13440.1	GapC-2, glyceraldehyde-3-phosphate dehydrogenase C subunit 2	calvin cycle	II) carbon fixation	cytosol	2525.18085	666.63947
[show peptides]	113	48	5.1	1	43.6	43.2	56	-0.102	AT2G40490.1	HEME2, Uroporphyrinogen decarboxylase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2525.18085	666.63947
[show peptides]	113	41	2.4	1	45.7	43.2	56	-0.178	AT1G51110.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT1G51110.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2525.18085	666.63947
[show peptides]	113	36	1.2	1	46.6	43.2	56	-0.165	AT5G25620.1	YUC6, Flavin-binding monooxygenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2525.18085	666.63947
[show peptides]	114	572	16.7	11	51.8	42.3	1000	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	725.80741	681.11466
[show peptides]	114	85	8.2	2	28.2	42.3	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.80741	681.11466
[show peptides]	114	44	3.8	1	42.8	42.3	1000	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	725.80741	681.11466
[show peptides]	114	34	5.1	1	10.8	42.3	1000	-0.358	AT1G14980.1	Cpn10, chaperonin 10	Cpn10	V) protein folding & processing	mitochondrion	725.80741	681.11466
[show peptides]	115	1682	49.5	25	42.5	40.7	85	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2354.88805	707.63204
[show peptides]	115	1583	45.1	23	42.8	40.7	85	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2354.88805	707.63204
[show peptides]	115	674	32.5	11	44.1	40.7	85	-0.293	AT5G23120.1	HCF136, photosystem II stability/assembly factor, chloroplast (HCF136)	g) auxiliary proteins	I) photophosphorylation	plastid	2354.88805	707.63204
[show peptides]	115	522	22.6	16	47.6	40.7	85	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2354.88805	707.63204
[show peptides]	115	395	20.4	8	40.9	40.7	85	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2354.88805	707.63204
[show peptides]	115	303	21.7	6	42.6	40.7	85	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2354.88805	707.63204
[show peptides]	115	182	12.4	3	41.8	40.7	85	-0.302	AT1G52510.1	Alpha/beta-Hydrolases superfamily protein (AT1G52510.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.88805	707.63204
[show peptides]	115	168	8.3	3	43.1	40.7	85	-0.292	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein (AT2G27680.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.88805	707.63204
[show peptides]	115	161	15.7	7	41.0	40.7	85	-0.101	AT1G75330.1	OTC, ornithine carbamoyltransferase	amino acid metabolism	VI) other metabolic pathways	plastid	2354.88805	707.63204
[show peptides]	115	147	14.8	5	43.9	40.7	85	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2354.88805	707.63204
[show peptides]	115	117	6.7	2	43.9	40.7	85	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2354.88805	707.63204
[show peptides]	115	98	4.7	2	43.3	40.7	85	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2354.88805	707.63204
[show peptides]	115	94	3.4	1	51.8	40.7	85	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2354.88805	707.63204
[show peptides]	115	87	17.7	2	28.6	40.7	85	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2354.88805	707.63204
[show peptides]	115	68	2.4	1	50.5	40.7	85	-0.135	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT3G15520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.88805	707.63204
[show peptides]	115	68	2.3	1	51.9	40.7	85	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2354.88805	707.63204
[show peptides]	115	64	2.8	1	43.7	40.7	85	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.88805	707.63204
[show peptides]	115	51	2.8	1	41.3	40.7	85	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.88805	707.63204
[show peptides]	115	46	1.6	2	124.7	40.7	85	-0.313	AT3G16830.1	TPR2, TOPLESS-related 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2354.88805	707.63204
[show peptides]	115	45	2.4	1	27.1	40.7	85	-1.017	AT5G51840.1	AT5G51840.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	2354.88805	707.63204
[show peptides]	115	38	1.2	1	66.2	40.7	85	-0.886	AT1G40129.1	AT1G40129.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	2354.88805	707.63204
[show peptides]	115	35	4.1	1	41.0	40.7	85	0.044	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2354.88805	707.63204
[show peptides]	115	35	2.7	1	46.6	40.7	85	0.028	AT3G27925.1	Deg1, DegP1, DegP protease 1	proteases	V) protein folding & processing	plastid	2354.88805	707.63204
[show peptides]	115	34	0.7	1	76.1	40.7	85	-0.487	AT1G02010.1	Sec1A, secretory 1A	protein transporters	III) transport	plastid new	2354.88805	707.63204
[show peptides]	116	878	36.7	17	40.9	41.8	42	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2618.87765	689.05151
[show peptides]	116	625	39.0	14	41.6	41.8	42	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B	sulfur metabolism	VI) other metabolic pathways	plastid	2618.87765	689.05151
[show peptides]	116	568	27.8	13	43.7	41.8	42	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2618.87765	689.05151
[show peptides]	116	387	20.2	8	41.3	41.8	42	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2618.87765	689.05151
[show peptides]	116	353	17.3	6	41.1	41.8	42	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2618.87765	689.05151
[show peptides]	116	345	17.9	7	42.5	41.8	42	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2618.87765	689.05151
[show peptides]	116	246	22.2	6	40.3	41.8	42	-0.365	AT5G66190.1	Ferredoxin-NADP(+)-oxidoreductase 1, ATLFNR1, FNR1	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2618.87765	689.05151
[show peptides]	116	167	11.4	5	55.3	41.8	42	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2618.87765	689.05151
[show peptides]	116	116	7.7	2	43.3	41.8	42	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2618.87765	689.05151
[show peptides]	116	85	7.5	2	30.1	41.8	42	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2618.87765	689.05151
[show peptides]	116	74	3.4	1	51.8	41.8	42	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	2618.87765	689.05151
[show peptides]	116	44	3.4	1	43.9	41.8	42	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2618.87765	689.05151
[show peptides]	116	42	2.3	1	42.7	41.8	42	-0.140	AT4G27800.1	TAP38, PPH1, thylakoid-associated phosphatase 38	g) auxiliary proteins	I) photophosphorylation	plastid	2618.87765	689.05151
[show peptides]	116	37	2.0	1	59.6	41.8	42	-0.152	AT5G08670.1	ATP synthase alpha/beta family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2618.87765	689.05151
[show peptides]	116	32	3.7	1	54.0	41.8	42	0.702	AT1G32080.1	Membrane protein, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2618.87765	689.05151
[show peptides]	117	150	5.3	2	51.8	42.6	1700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	303.55873	675.40862
[show peptides]	117	33	1.5	1	64.5	42.6	1700	-0.776	AT5G17430.1	BBM, Integrase-type DNA-binding superfamily protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	303.55873	675.40862
[show peptides]	118	634	19.2	11	51.8	42.3	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40251	681.47148
[show peptides]	118	236	10.8	4	39.5	42.3	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	681.47148
[show peptides]	118	134	6.9	3	56.0	42.3	560	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1106.40251	681.47148
[show peptides]	118	126	6.8	2	38.9	42.3	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	681.47148
[show peptides]	118	51	1.1	1	82.4	42.3	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40251	681.47148
[show peptides]	119	269	9.9	5	51.8	42.4	1500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	419.62125	678.76739
[show peptides]	119	45	2.2	1	56.0	42.4	1500	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	419.62125	678.76739
[show peptides]	120	1051	42.9	18	42.5	41.3	27	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2744.05924	696.96303
[show peptides]	120	914	49.5	18	42.6	41.3	27	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2744.05924	696.96303
[show peptides]	120	902	38.3	15	42.8	41.3	27	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2744.05924	696.96303
[show peptides]	120	629	29.8	11	44.1	41.3	27	-0.293	AT5G23120.1	HCF136, photosystem II stability/assembly factor, chloroplast (HCF136)	g) auxiliary proteins	I) photophosphorylation	plastid	2744.05924	696.96303
[show peptides]	120	579	28.9	11	43.9	41.3	27	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.05924	696.96303
[show peptides]	120	492	22.6	9	40.5	41.3	27	-0.262	AT2G35490.1	Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	458	21.0	9	45.7	41.3	27	-0.178	AT1G51110.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT1G51110.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	422	15.9	7	50.5	41.3	27	-0.135	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT3G15520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	401	20.6	6	40.9	41.3	27	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2744.05924	696.96303
[show peptides]	120	368	25.1	8	43.6	41.3	27	-0.102	AT2G40490.1	HEME2, Uroporphyrinogen decarboxylase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.05924	696.96303
[show peptides]	120	337	19.7	8	46.1	41.3	27	-0.284	AT1G77490.1	TAPX, thylakoidal ascorbate peroxidase	antioxidants	VI) other metabolic pathways	plastid	2744.05924	696.96303
[show peptides]	120	253	16.4	6	41.5	41.3	27	-0.276	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	233	14.6	5	43.1	41.3	27	-0.328	AT5G20140.1	SOUL heme-binding family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	211	23.4	6	41.8	41.3	27	-0.302	AT1G52510.1	Alpha/beta-Hydrolases superfamily protein (AT1G52510.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	167	5.7	3	51.9	41.3	27	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2744.05924	696.96303
[show peptides]	120	153	12.6	4	43.9	41.3	27	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2744.05924	696.96303
[show peptides]	120	146	7.2	3	53.9	41.3	27	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2744.05924	696.96303
[show peptides]	120	99	6.5	3	43.3	41.3	27	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2744.05924	696.96303
[show peptides]	120	80	5.1	2	43.7	41.3	27	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	77	7.5	2	30.1	41.3	27	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2744.05924	696.96303
[show peptides]	120	75	5.9	2	41.6	41.3	27	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B	sulfur metabolism	VI) other metabolic pathways	plastid	2744.05924	696.96303
[show peptides]	120	51	4.1	1	41.0	41.3	27	0.044	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2744.05924	696.96303
[show peptides]	120	51	2.3	1	42.7	41.3	27	-0.140	AT4G27800.1	TAP38, PPH1, thylakoid-associated phosphatase 38	g) auxiliary proteins	I) photophosphorylation	plastid	2744.05924	696.96303
[show peptides]	120	40	1.7	1	76.7	41.3	27	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2744.05924	696.96303
[show peptides]	121	637	23.8	12	61.1	91.6	95	-0.404	AT5G26000.1	TGG1, BGLU38, thioglucoside glucohydrolase 1	glucosinolate metabolism	VI) other metabolic pathways	vacuole	2304.70895	294.37743
[show peptides]	121	175	7.0	5	102.0	91.6	95	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2304.70895	294.37743
[show peptides]	121	77	5.1	2	47.4	91.6	95	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2304.70895	294.37743
[show peptides]	121	51	3.8	1	42.8	91.6	95	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2304.70895	294.37743
[show peptides]	121	34	1.6	1	56.8	91.6	95	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2304.70895	294.37743
[show peptides]	122	277	9.9	5	51.8	42.4	700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	951.78752	679.25918
[show peptides]	123	1733	54.8	30	43.0	41.3	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2244.22009	696.84632
[show peptides]	123	1674	54.1	32	42.9	41.3	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2244.22009	696.84632
[show peptides]	123	589	25.0	9	42.5	41.3	110	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2244.22009	696.84632
[show peptides]	123	293	11.5	5	42.3	41.3	110	-0.249	AT2G01140.1	Aldolase superfamily protein (AT2G01140.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2244.22009	696.84632
[show peptides]	123	169	7.5	4	59.2	41.3	110	0.775	AT5G12860.1	DiT1, DCT, dicarboxylate transporter 1	other transporters	III) transport	plastid	2244.22009	696.84632
[show peptides]	123	151	8.9	3	47.6	41.3	110	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2244.22009	696.84632
[show peptides]	123	124	5.8	2	42.6	41.3	110	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2244.22009	696.84632
[show peptides]	123	107	10.1	2	36.9	41.3	110	-0.137	AT1G13440.1	GapC-2, glyceraldehyde-3-phosphate dehydrogenase C subunit 2	calvin cycle	II) carbon fixation	cytosol	2244.22009	696.84632
[show peptides]	123	67	4.3	1	40.9	41.3	110	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2244.22009	696.84632
[show peptides]	123	55	3.0	1	28.2	41.3	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2244.22009	696.84632
[show peptides]	123	37	2.4	1	44.7	41.3	110	-0.031	AT1G09795.1	ATATP-PRT2, HISN1B, ATP-PRT2, ATP phosphoribosyl transferase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2244.22009	696.84632
[show peptides]	124	332	11.8	7	51.8	42.3	1150	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	616.05666	680.3984
[show peptides]	125	1032	36.6	18	42.5	40.6	170	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	1969.89169	709.21384
[show peptides]	125	710	29.5	11	44.1	40.6	170	-0.293	AT5G23120.1	HCF136, photosystem II stability/assembly factor, chloroplast (HCF136)	g) auxiliary proteins	I) photophosphorylation	plastid	1969.89169	709.21384
[show peptides]	125	462	23.5	9	36.6	40.6	170	0.220	AT5G54770.1	THI1, TZ, THI4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89169	709.21384
[show peptides]	125	442	20.1	9	40.9	40.6	170	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1969.89169	709.21384
[show peptides]	125	339	16.5	9	43.3	40.6	170	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1969.89169	709.21384
[show peptides]	125	283	14.5	5	43.9	40.6	170	-0.351	AT1G03630.1	POR C, protochlorophyllide oxidoreductase C	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	1969.89169	709.21384
[show peptides]	125	183	13.0	6	42.6	40.6	170	-0.364	AT1G09340.1	CSP41B, Chloroplast stem-loop binding protein of 41 kDa b, HIP1.3, chloroplast RNA binding	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1969.89169	709.21384
[show peptides]	125	177	12.6	4	43.9	40.6	170	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	1969.89169	709.21384
[show peptides]	125	117	7.8	3	43.1	40.6	170	-0.292	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein (AT2G27680.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89169	709.21384
[show peptides]	125	111	10.3	3	41.3	40.6	170	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89169	709.21384
[show peptides]	125	89	4.2	2	51.9	40.6	170	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1969.89169	709.21384
[show peptides]	125	79	3.4	1	51.8	40.6	170	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1969.89169	709.21384
[show peptides]	125	75	2.4	1	50.5	40.6	170	-0.135	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT3G15520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1969.89169	709.21384
[show peptides]	125	58	2.5	1	44.2	40.6	170	-0.093	AT1G30120.1	PDH-E1 beta, pyruvate dehydrogenase E1 beta	fatty acid metabolism	VI) other metabolic pathways	plastid	1969.89169	709.21384
[show peptides]	125	36	0.7	1	118.7	40.6	170	0.062	AT3G21180.1	ACA9, ATACA9, autoinhibited Ca(2+)-ATPase 9	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1969.89169	709.21384
[show peptides]	125	35	2.7	1	34.6	40.6	170	-0.358	AT1G11230.1	AT1G11230.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid new	1969.89169	709.21384
[show peptides]	125	34	1.6	1	56.8	40.6	170	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1969.89169	709.21384
[show peptides]	126	37	3.8	1	42.8	40.7	140	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2091.76116	707.39475
[show peptides]	127	1127	37.1	20	42.5	40.0	250	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	1697.65195	719.72734
[show peptides]	127	1091	41.1	20	42.8	40.0	250	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	1697.65195	719.72734
[show peptides]	127	648	28.4	13	40.9	40.0	250	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	432	18.2	8	51.8	40.0	250	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	281	16.6	5	35.3	40.0	250	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	232	10.8	4	39.5	40.0	250	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	199	12.0	4	28.2	40.0	250	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	83	2.6	1	56.0	40.0	250	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	76	3.1	1	38.9	40.0	250	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	72	2.8	1	41.3	40.0	250	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1697.65195	719.72734
[show peptides]	127	62	5.6	1	24.1	40.0	250	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	40	1.6	1	41.1	40.0	250	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	1697.65195	719.72734
[show peptides]	127	34	1.2	1	46.6	40.0	250	-0.165	AT5G25620.1	YUC6, Flavin-binding monooxygenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1697.65195	719.72734
[show peptides]	128	1490	39.9	31	40.9	38.5	300	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	748.11422
[show peptides]	128	951	47.8	17	53.9	38.5	300	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	748.11422
[show peptides]	128	265	11.2	5	55.3	38.5	300	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	748.11422
[show peptides]	128	118	8.7	3	41.1	38.5	300	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	1562.90571	748.11422
[show peptides]	128	93	3.4	1	51.8	38.5	300	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1562.90571	748.11422
[show peptides]	128	46	2.8	1	41.3	38.5	300	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1562.90571	748.11422
[show peptides]	128	37	5.4	2	42.3	38.5	300	0.452	AT5G54800.1	GPT1, ATGPT1, glucose 6-phosphate/phosphate translocator 1	other transporters	III) transport	plastid	1562.90571	748.11422
[show peptides]	128	36	3.4	1	21.9	38.5	300	0.399	AT1G17200.1	AT1G17200.1	proteins of unknown functions	VIII) proteins of unknown functions	plasma membrane	1562.90571	748.11422
[show peptides]	129	587	28.7	12	38.0	39.6	1500	-0.214	AT1G64770.1	PnsB2	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	728.40719
[show peptides]	129	126	6.8	3	42.8	39.6	1500	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	419.62125	728.40719
[show peptides]	129	86	5.0	2	43.3	39.6	1500	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	419.62125	728.40719
[show peptides]	129	64	3.4	1	51.8	39.6	1500	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	419.62125	728.40719
[show peptides]	129	37	3.7	1	28.2	39.6	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62125	728.40719
[show peptides]	130	1050	46.0	20	41.3	40.0	42	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	515	27.8	12	43.7	40.0	42	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	492	20.7	8	53.9	40.0	42	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2621.23429	721.09823
[show peptides]	130	436	22.9	9	42.4	40.0	42	-0.111	AT3G55800.1	SBPASE, sedoheptulose-bisphosphatase	calvin cycle	II) carbon fixation	plastid	2621.23429	721.09823
[show peptides]	130	339	16.0	7	55.3	40.0	42	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2621.23429	721.09823
[show peptides]	130	299	18.3	5	37.0	40.0	42	-0.078	AT5G03880.1	Thioredoxin family protein	antioxidants	VI) other metabolic pathways	plastid	2621.23429	721.09823
[show peptides]	130	276	16.4	5	40.9	40.0	42	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2621.23429	721.09823
[show peptides]	130	242	13.0	6	41.3	40.0	42	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	232	22.5	5	37.9	40.0	42	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	206	11.9	5	54.0	40.0	42	0.702	AT1G32080.1	Membrane protein, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	153	11.6	4	50.1	40.0	42	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2621.23429	721.09823
[show peptides]	130	84	4.7	2	49.1	40.0	42	-0.334	AT2G39730.2	RCA, rubisco activase (Isoform 2)	other proteins	II) carbon fixation	plastid	2621.23429	721.09823
[show peptides]	130	70	9.4	3	27.8	40.0	42	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2621.23429	721.09823
[show peptides]	130	68	4.4	1	39.8	40.0	42	-0.155	AT1G29670.1	GDSL-like Lipase, Acylhydrolase superfamily protein	fatty acid metabolism	VI) other metabolic pathways	extracellular	2621.23429	721.09823
[show peptides]	130	62	4.8	2	41.0	40.0	42	0.071	AT5G57850.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	60	9.5	2	37.6	40.0	42	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2621.23429	721.09823
[show peptides]	130	56	3.9	1	30.1	40.0	42	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2621.23429	721.09823
[show peptides]	130	51	2.8	1	39.4	40.0	42	-0.048	AT1G78140.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	48	2.8	2	76.7	40.0	42	-0.132	AT1G50250.1	FtsH1, FtsH protease 1	proteases	V) protein folding & processing	plastid	2621.23429	721.09823
[show peptides]	130	43	1.2	1	73.2	40.0	42	-0.125	AT1G06430.1	FtsH8, FtsH protease 8	proteases	V) protein folding & processing	plastid	2621.23429	721.09823
[show peptides]	130	39	3.4	1	29.6	40.0	42	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	130	38	3.0	1	42.4	40.0	42	0.078	AT3G47520.1	MDH, malate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2621.23429	721.09823
[show peptides]	131	444	25.6	11	38.0	39.3	1700	-0.214	AT1G64770.1	PnsB2	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	733.81057
[show peptides]	131	64	3.0	1	43.3	39.3	1700	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	303.55873	733.81057
[show peptides]	131	53	3.8	1	42.8	39.3	1700	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	303.55873	733.81057
[show peptides]	131	43	3.4	1	51.8	39.3	1700	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	303.55873	733.81057
[show peptides]	131	41	0.4	1	230.7	39.3	1700	0.042	AT1G44120.1	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	303.55873	733.81057
[show peptides]	132	1081	45.3	21	52.9	38.8	430	-0.272	ATCG00490.1	RbcL, ribulose-bisphosphate carboxylases, large chain	calvin cycle	II) carbon fixation	plastid	1357.29361	742.20664
[show peptides]	132	851	36.5	18	40.9	38.8	430	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1357.29361	742.20664
[show peptides]	132	94	6.5	2	41.3	38.8	430	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1357.29361	742.20664
[show peptides]	132	78	8.9	2	20.2	38.8	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	742.20664
[show peptides]	132	34	1.0	1	56.7	38.8	430	-0.482	AT1G20620.1	CAT3, SEN2, ATCAT3, catalase 3	antioxidants	VI) other metabolic pathways	peroxisome	1357.29361	742.20664
[show peptides]	133	830	34.0	16	40.9	38.2	20	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2826.99951	754.41068
[show peptides]	133	827	43.4	17	41.6	38.2	20	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B	sulfur metabolism	VI) other metabolic pathways	plastid	2826.99951	754.41068
[show peptides]	133	751	35.5	16	41.1	38.2	20	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2826.99951	754.41068
[show peptides]	133	613	26.1	11	43.7	38.2	20	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2826.99951	754.41068
[show peptides]	133	582	31.3	15	42.4	38.2	20	-0.111	AT3G55800.1	SBPASE, sedoheptulose-bisphosphatase	calvin cycle	II) carbon fixation	plastid	2826.99951	754.41068
[show peptides]	133	546	36.1	14	40.3	38.2	20	-0.365	AT5G66190.1	Ferredoxin-NADP(+)-oxidoreductase 1, ATLFNR1, FNR1	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2826.99951	754.41068
[show peptides]	133	419	26.0	10	42.5	38.2	20	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2826.99951	754.41068
[show peptides]	133	310	17.6	6	41.3	38.2	20	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2826.99951	754.41068
[show peptides]	133	159	11.8	4	41.0	38.2	20	-0.134	AT5G08280.1	HEMC, hydroxymethylbilane synthase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2826.99951	754.41068
[show peptides]	133	145	10.1	3	41.0	38.2	20	0.044	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2826.99951	754.41068
[show peptides]	133	85	5.9	2	43.9	38.2	20	-0.171	AT3G63140.1	CSP41A, chloroplast stem-loop binding protein of 41 kDa	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2826.99951	754.41068
[show peptides]	133	84	4.7	2	49.1	38.2	20	-0.334	AT2G39730.2	RCA, rubisco activase (Isoform 2)	other proteins	II) carbon fixation	plastid	2826.99951	754.41068
[show peptides]	133	72	4.7	2	43.3	38.2	20	-0.198	AT4G27440.1	PORB, protochlorophyllide oxidoreductase B	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2826.99951	754.41068
[show peptides]	133	67	9.6	2	30.1	38.2	20	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2826.99951	754.41068
[show peptides]	133	63	5.0	2	35.8	38.2	20	-0.040	AT4G36530.1	Alpha/beta-Hydrolases superfamily protein (AT4G36530.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2826.99951	754.41068
[show peptides]	133	41	2.5	1	47.7	38.2	20	0.178	AT1G05140.1	Peptidase M50 family protein	proteases	V) protein folding & processing	plastid	2826.99951	754.41068
[show peptides]	134	439	17.7	8	40.9	39.0	540	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1155.03048	738.47824
[show peptides]	134	234	10.8	4	39.5	39.0	540	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1155.03048	738.47824
[show peptides]	134	182	8.8	3	38.9	39.0	540	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1155.03048	738.47824
[show peptides]	134	114	3.4	1	51.8	39.0	540	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1155.03048	738.47824
[show peptides]	134	49	1.1	1	82.4	39.0	540	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1155.03048	738.47824
[show peptides]	134	40	2.8	1	41.3	39.0	540	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1155.03048	738.47824
[show peptides]	135	724	33.0	14	35.5	37.4	70	-0.405	AT5G17710.1	EMB1241, Co-chaperone GrpE family protein	other HSP	V) protein folding & processing	plastid	2435.75684	770.67501
[show peptides]	135	600	38.4	14	37.6	37.4	70	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2435.75684	770.67501
[show peptides]	135	340	19.1	9	37.4	37.4	70	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2435.75684	770.67501
[show peptides]	135	327	21.3	6	37.9	37.4	70	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2435.75684	770.67501
[show peptides]	135	297	20.5	8	41.2	37.4	70	-0.070	AT2G05990.1	MOD1, ENR1, NAD(P)-binding Rossmann-fold superfamily protein	fatty acid metabolism	VI) other metabolic pathways	plastid	2435.75684	770.67501
[show peptides]	135	284	14.3	6	50.1	37.4	70	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2435.75684	770.67501
[show peptides]	135	172	9.5	3	42.8	37.4	70	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2435.75684	770.67501
[show peptides]	135	165	7.5	4	41.3	37.4	70	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2435.75684	770.67501
[show peptides]	135	142	17.9	3	29.8	37.4	70	-0.519	ATCG00830.1	Rpl2.1, Ribosomal protein L2	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2435.75684	770.67501
[show peptides]	135	98	2.8	2	79.9	37.4	70	-0.231	AT2G45290.1	Transketolase (AT2G45290.1)	calvin cycle	II) carbon fixation	plastid	2435.75684	770.67501
[show peptides]	135	95	6.7	2	36.9	37.4	70	-0.140	AT4G34090.1	AT4G34090.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2435.75684	770.67501
[show peptides]	135	56	3.4	1	44.6	37.4	70	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid	2435.75684	770.67501
[show peptides]	135	55	3.0	1	28.2	37.4	70	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2435.75684	770.67501
[show peptides]	135	52	5.4	2	37.3	37.4	70	0.096	AT5G09660.1	PMDH2, peroxisomal NAD-malate dehydrogenase 2	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2435.75684	770.67501
[show peptides]	135	51	3.4	1	29.6	37.4	70	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2435.75684	770.67501
[show peptides]	135	49	1.6	1	56.8	37.4	70	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2435.75684	770.67501
[show peptides]	135	35	4.2	1	35.1	37.4	70	-0.746	AT2G24060.1	Translation initiation factor 3 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2435.75684	770.67501
[show peptides]	136	874	33.3	16	41.2	36.9	79	-0.070	AT2G05990.1	MOD1, ENR1, NAD(P)-binding Rossmann-fold superfamily protein	fatty acid metabolism	VI) other metabolic pathways	plastid	2389.40955	780.66631
[show peptides]	136	551	30.1	10	42.5	36.9	79	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2389.40955	780.66631
[show peptides]	136	398	30.3	8	37.6	36.9	79	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2389.40955	780.66631
[show peptides]	136	260	18.8	7	37.4	36.9	79	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.40955	780.66631
[show peptides]	136	191	16.3	5	37.9	36.9	79	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.40955	780.66631
[show peptides]	136	190	20.8	4	29.8	36.9	79	-0.519	ATCG00830.1	Rpl2.1, Ribosomal protein L2	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2389.40955	780.66631
[show peptides]	136	182	6.7	3	49.9	36.9	79	0.186	AT1G56190.1	Phosphoglycerate kinase family protein (Isoform 1)	calvin cycle	II) carbon fixation	plastid	2389.40955	780.66631
[show peptides]	136	169	12.2	4	36.3	36.9	79	-0.147	AT1G21440.1	Phosphoenolpyruvate carboxylase family protein (AT1G21440.1)	other proteins	II) carbon fixation	plastid	2389.40955	780.66631
[show peptides]	136	118	6.3	2	44.6	36.9	79	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid	2389.40955	780.66631
[show peptides]	136	110	6.7	2	36.9	36.9	79	-0.140	AT4G34090.1	AT4G34090.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2389.40955	780.66631
[show peptides]	136	94	8.3	3	35.1	36.9	79	-0.746	AT2G24060.1	Translation initiation factor 3 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2389.40955	780.66631
[show peptides]	136	92	6.7	2	28.2	36.9	79	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2389.40955	780.66631
[show peptides]	136	79	4.0	1	32.6	36.9	79	-0.244	AT2G33800.1	Rps5, Ribosomal protein S5 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2389.40955	780.66631
[show peptides]	136	64	3.4	1	29.6	36.9	79	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.40955	780.66631
[show peptides]	136	63	5.4	2	41.3	36.9	79	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.40955	780.66631
[show peptides]	136	63	5.1	2	37.3	36.9	79	0.096	AT5G09660.1	PMDH2, peroxisomal NAD-malate dehydrogenase 2	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2389.40955	780.66631
[show peptides]	136	57	6.5	2	36.5	36.9	79	-0.096	AT1G77060.1	Phosphoenolpyruvate carboxylase family protein (AT1G77060.1)	other proteins	II) carbon fixation	plastid	2389.40955	780.66631
[show peptides]	136	56	2.8	1	41.3	36.9	79	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.40955	780.66631
[show peptides]	136	48	2.5	2	65.7	36.9	79	-0.268	AT3G01510.1	LSF1, like SEX4 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2389.40955	780.66631
[show peptides]	137	930	36.6	17	35.3	33.6	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.28958	854.64037
[show peptides]	137	509	22.7	9	38.9	33.6	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1669.28958	854.64037
[show peptides]	137	283	10.8	4	39.5	33.6	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.28958	854.64037
[show peptides]	137	35	1.8	1	37.8	33.6	260	-0.367	AT5G60520.1	Late embryogenesis abundant (LEA) protein-related	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1669.28958	854.64037
[show peptides]	137	34	1.0	1	70.0	33.6	260	-0.225	AT1G31950.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1669.28958	854.64037
[show peptides]	138	574	22.7	10	38.9	33.2	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	863.37216
[show peptides]	138	341	11.6	5	39.5	33.2	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	863.37216
[show peptides]	138	83	7.3	2	29.2	33.2	560	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	1106.40251	863.37216
[show peptides]	138	59	4.8	1	27.7	33.2	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40251	863.37216
[show peptides]	138	49	1.1	1	82.4	33.2	560	0.120	ATCG00340.1	PsaB	a) photosystem I	I) photophosphorylation	plastid	1106.40251	863.37216
[show peptides]	138	34	1.4	1	40.0	33.2	560	-0.000	AT1G33230.1	TMPIT-like protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	1106.40251	863.37216
[show peptides]	139	1286	47.6	27	42.4	36.5	17	-0.111	AT3G55800.1	SBPASE, sedoheptulose-bisphosphatase	calvin cycle	II) carbon fixation	plastid	2867.80707	788.87478
[show peptides]	139	515	26.0	9	40.9	36.5	17	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	2867.80707	788.87478
[show peptides]	139	476	23.3	9	43.7	36.5	17	-0.095	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G35250.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.80707	788.87478
[show peptides]	139	473	23.8	8	41.3	36.5	17	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.80707	788.87478
[show peptides]	139	313	20.1	7	42.4	36.5	17	0.078	AT3G47520.1	MDH, malate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.80707	788.87478
[show peptides]	139	271	14.1	5	41.0	36.5	17	-0.134	AT5G08280.1	HEMC, hydroxymethylbilane synthase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2867.80707	788.87478
[show peptides]	139	262	17.1	7	41.1	36.5	17	-0.380	AT1G20020.1	Ferredoxin-NADP(+)-oxidoreductase 2, ATLFNR2, FNR2	f) ferredoxin-NADP(+)-oxidoreductase	I) photophosphorylation	plastid	2867.80707	788.87478
[show peptides]	139	136	12.0	4	41.6	36.5	17	0.018	AT2G43750.1	OASB, ACS1, CPACS1, O-acetylserine (thiol) lyase B	sulfur metabolism	VI) other metabolic pathways	plastid	2867.80707	788.87478
[show peptides]	139	117	7.7	3	37.0	36.5	17	-0.078	AT5G03880.1	Thioredoxin family protein	antioxidants	VI) other metabolic pathways	plastid	2867.80707	788.87478
[show peptides]	139	101	3.7	2	74.1	36.5	17	-0.142	AT2G30950.1	FtsH2, VAR2, FtsH extracellular protease family	proteases	V) protein folding & processing	plastid	2867.80707	788.87478
[show peptides]	139	94	4.7	2	49.1	36.5	17	-0.334	AT2G39730.2	RCA, rubisco activase (Isoform 2)	other proteins	II) carbon fixation	plastid	2867.80707	788.87478
[show peptides]	139	61	2.2	1	35.8	36.5	17	-0.040	AT4G36530.1	Alpha/beta-Hydrolases superfamily protein (AT4G36530.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.80707	788.87478
[show peptides]	139	45	2.8	1	39.4	36.5	17	-0.048	AT1G78140.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.80707	788.87478
[show peptides]	139	42	2.5	1	47.7	36.5	17	0.178	AT1G05140.1	Peptidase M50 family protein	proteases	V) protein folding & processing	plastid	2867.80707	788.87478
[show peptides]	139	36	2.5	1	39.5	36.5	17	-0.000	AT5G38520.1	Alpha/beta-Hydrolases superfamily protein (AT5G38520.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.80707	788.87478
[show peptides]	139	34	2.2	1	55.3	36.5	17	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2867.80707	788.87478
[show peptides]	139	33	2.6	1	41.3	36.5	17	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2867.80707	788.87478
[show peptides]	140	811	29.7	15	53.9	36.5	31	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2705.68313	788.35781
[show peptides]	140	663	30.5	10	37.3	36.5	31	0.096	AT5G09660.1	PMDH2, peroxisomal NAD-malate dehydrogenase 2	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2705.68313	788.35781
[show peptides]	140	495	37.0	11	37.6	36.5	31	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2705.68313	788.35781
[show peptides]	140	474	40.6	13	37.4	36.5	31	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68313	788.35781
[show peptides]	140	407	30.5	7	37.9	36.5	31	-0.268	AT3G63410.1	APG1, VTE3, IEP37, E37, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68313	788.35781
[show peptides]	140	401	25.6	8	41.3	36.5	31	-0.054	AT5G23060.1	CaS, calcium sensing receptor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68313	788.35781
[show peptides]	140	372	17.5	7	50.1	36.5	31	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2705.68313	788.35781
[show peptides]	140	367	18.1	8	41.3	36.5	31	0.104	AT5G12470.1	Protein of unknown function (DUF3411)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68313	788.35781
[show peptides]	140	323	23.6	6	37.0	36.5	31	-0.078	AT5G03880.1	Thioredoxin family protein	antioxidants	VI) other metabolic pathways	plastid	2705.68313	788.35781
[show peptides]	140	233	12.8	5	55.3	36.5	31	-0.048	ATCG00120.1	F1 part, alpha subunit (AtpA)	d) atp-synthase	I) photophosphorylation	plastid	2705.68313	788.35781
[show peptides]	140	152	11.4	3	31.1	36.5	31	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2705.68313	788.35781
[show peptides]	140	78	5.5	2	54.0	36.5	31	0.702	AT1G32080.1	Membrane protein, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68313	788.35781
[show peptides]	140	73	5.7	2	42.4	36.5	31	0.078	AT3G47520.1	MDH, malate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68313	788.35781
[show peptides]	140	59	7.1	2	32.7	36.5	31	0.703	AT5G46110	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid new	2705.68313	788.35781
[show peptides]	140	54	6.7	2	28.2	36.5	31	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2705.68313	788.35781
[show peptides]	140	48	3.4	1	29.6	36.5	31	0.430	AT2G10940.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2705.68313	788.35781
[show peptides]	140	37	3.8	1	35.3	36.5	31	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	2705.68313	788.35781
[show peptides]	141	499	22.7	10	38.9	32.7	1000	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	725.80741	874.60943
[show peptides]	141	343	11.6	5	39.5	32.7	1000	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	725.80741	874.60943
[show peptides]	141	232	12.0	4	28.2	32.7	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.80741	874.60943
[show peptides]	141	148	12.1	3	28.6	32.7	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.80741	874.60943
[show peptides]	141	69	5.9	2	31.1	32.7	1000	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	725.80741	874.60943
[show peptides]	141	34	1.4	1	40.0	32.7	1000	-0.000	AT1G33230.1	TMPIT-like protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plasma membrane	725.80741	874.60943
[show peptides]	142	368	12.8	8	51.6	33.2	210	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1840.6598	862.90757
[show peptides]	142	262	14.8	7	51.9	33.2	210	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1840.6598	862.90757
[show peptides]	142	156	19.0	4	27.5	33.2	210	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1840.6598	862.90757
[show peptides]	142	37	1.6	1	56.8	33.2	210	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1840.6598	862.90757
[show peptides]	143	73	7.5	2	28.6	34.4	94	-0.118	AT2G05100.1	Lhcb2.1	b) photosystem II	I) photophosphorylation	plastid	2312.10534	833.90425
[show peptides]	143	38	2.9	2	27.5	34.4	94	-0.566	AT5G53030.1	Protein of unknown function (DUF688)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2312.10534	833.90425
[show peptides]	144	527	22.7	9	38.9	32.8	830	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	829.76771	872.51016
[show peptides]	144	345	11.6	5	39.5	32.8	830	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	829.76771	872.51016
[show peptides]	144	189	12.0	4	28.2	32.8	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.76771	872.51016
[show peptides]	144	125	12.1	3	28.6	32.8	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.76771	872.51016
[show peptides]	144	61	5.9	2	31.1	32.8	830	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	829.76771	872.51016
[show peptides]	144	58	3.8	1	35.3	32.8	830	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	829.76771	872.51016
[show peptides]	145	240	11.6	5	39.5	32.8	700	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	951.78752	872.16454
[show peptides]	145	95	3.7	1	38.9	32.8	700	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	951.78752	872.16454
[show peptides]	145	35	1.2	1	64.0	32.8	700	-0.128	AT4G34030.1	MCCB, 3-methylcrotonyl-CoA carboxylase	amino acid metabolism	VI) other metabolic pathways	mitochondrion	951.78752	872.16454
[show peptides]	146	523	22.9	10	39.5	33.3	190	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1891.24131	860.17951
[show peptides]	146	483	28.0	9	38.9	33.3	190	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1891.24131	860.17951
[show peptides]	146	291	26.4	7	32.6	33.3	190	-0.244	AT2G33800.1	Rps5, Ribosomal protein S5 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1891.24131	860.17951
[show peptides]	146	136	8.5	3	44.6	33.3	190	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid	1891.24131	860.17951
[show peptides]	146	129	11.6	3	35.3	33.3	190	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1891.24131	860.17951
[show peptides]	146	108	9.0	3	28.2	33.3	190	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1891.24131	860.17951
[show peptides]	146	82	8.3	2	36.6	33.3	190	0.220	AT5G54770.1	THI1, TZ, THI4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1891.24131	860.17951
[show peptides]	146	38	1.6	1	56.8	33.3	190	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1891.24131	860.17951
[show peptides]	147	769	43.7	16	35.1	32.7	78	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	691	43.8	15	35.0	32.7	78	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	529	30.9	13	37.9	32.7	78	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2393.60901	876.86518
[show peptides]	147	263	11.7	4	44.6	32.7	78	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid	2393.60901	876.86518
[show peptides]	147	180	14.3	5	36.0	32.7	78	-0.488	AT3G53460.1	CP29, chloroplast RNA-binding protein 29	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2393.60901	876.86518
[show peptides]	147	173	12.1	4	32.0	32.7	78	0.168	AT5G52100.1	Dihydrodipicolinate reductase bacterial/plant, crr1	g) auxiliary proteins	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	162	9.8	3	42.8	32.7	78	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2393.60901	876.86518
[show peptides]	147	155	14.2	4	34.9	32.7	78	-0.178	AT4G18370.1	Deg5, DegP5, DegP protease 5, HHOA	proteases	V) protein folding & processing	plastid	2393.60901	876.86518
[show peptides]	147	150	7.2	2	35.8	32.7	78	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.60901	876.86518
[show peptides]	147	131	10.1	3	38.9	32.7	78	-0.283	AT4G28740.1	AT4G28740.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2393.60901	876.86518
[show peptides]	147	117	7.1	2	33.8	32.7	78	-0.055	AT4G25080.1	CHLM, magnesium-protoporphyrin IX methyltransferase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.60901	876.86518
[show peptides]	147	100	16.4	3	29.4	32.7	78	-0.334	AT4G17600.1	LIL3:1, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	78	5.4	1	41.9	32.7	78	0.267	AT3G51820.1	ATG4, G4, CHLG, UbiA prenyltransferase family protein	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2393.60901	876.86518
[show peptides]	147	73	6.7	2	33.4	32.7	78	-0.363	AT5G09650.1	AtPPa6, PPa6, pyrophosphorylase 6	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2393.60901	876.86518
[show peptides]	147	71	8.3	3	31.3	32.7	78	-0.008	AT1G16880.1	Uridylyltransferase-related	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2393.60901	876.86518
[show peptides]	147	69	2.1	1	41.4	32.7	78	-0.120	AT3G08580.1	AAC1, ADP/ATP carrier 1	other transporters	III) transport	mitochondrion	2393.60901	876.86518
[show peptides]	147	60	3.2	1	34.8	32.7	78	-0.555	AT5G24490.1	30S ribosomal protein, putative	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2393.60901	876.86518
[show peptides]	147	59	2.3	1	51.9	32.7	78	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2393.60901	876.86518
[show peptides]	147	56	4.3	1	34.8	32.7	78	0.100	AT4G39460.1	SAMC1, SAMT1, S-adenosylmethionine carrier 1	other transporters	III) transport	plastid	2393.60901	876.86518
[show peptides]	147	55	9.8	2	31.2	32.7	78	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	49	3.1	1	38.9	32.7	78	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	48	3.0	1	28.2	32.7	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	35	2.8	1	53.9	32.7	78	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2393.60901	876.86518
[show peptides]	147	34	4.1	1	30.1	32.7	78	-0.092	AT2G45990.1	AT2G45990.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2393.60901	876.86518
[show peptides]	148	745	35.8	12	37.9	33.4	160	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2023.64141	857.71663
[show peptides]	148	327	18.9	9	53.9	33.4	160	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	307	19.2	7	36.6	33.4	160	0.220	AT5G54770.1	THI1, TZ, THI4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2023.64141	857.71663
[show peptides]	148	240	23.6	5	30.1	33.4	160	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	231	20.8	5	35.1	33.4	160	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	226	11.7	4	44.6	33.4	160	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid	2023.64141	857.71663
[show peptides]	148	208	11.4	3	31.1	33.4	160	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	163	11.2	4	28.2	33.4	160	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	132	9.1	3	35.3	33.4	160	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	123	12.9	3	31.2	33.4	160	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	113	10.9	3	33.8	33.4	160	-0.055	AT4G25080.1	CHLM, magnesium-protoporphyrin IX methyltransferase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2023.64141	857.71663
[show peptides]	148	76	6.2	2	39.5	33.4	160	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	148	56	3.1	1	38.9	33.4	160	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2023.64141	857.71663
[show peptides]	149	802	50.6	15	35.1	32.5	32	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2704.81796	880.0066
[show peptides]	149	729	49.8	14	35.0	32.5	32	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2704.81796	880.0066
[show peptides]	149	573	32.1	10	37.9	32.5	32	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2704.81796	880.0066
[show peptides]	149	521	46.4	10	30.1	32.5	32	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2704.81796	880.0066
[show peptides]	149	470	31.4	8	31.2	32.5	32	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2704.81796	880.0066
[show peptides]	149	432	26.2	6	31.1	32.5	32	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2704.81796	880.0066
[show peptides]	149	254	19.3	6	35.8	32.5	32	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2704.81796	880.0066
[show peptides]	149	250	11.7	4	44.6	32.5	32	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid	2704.81796	880.0066
[show peptides]	149	223	14.2	4	34.9	32.5	32	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2704.81796	880.0066
[show peptides]	149	102	5.9	2	43.6	32.5	32	0.641	AT2G26900.1	Sodium Bile acid symporter family	other transporters	III) transport	plastid	2704.81796	880.0066
[show peptides]	149	77	6.7	2	28.2	32.5	32	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2704.81796	880.0066
[show peptides]	149	64	3.4	1	35.7	32.5	32	-0.022	AT4G22890.1	PGR5-LIKE A	g) auxiliary proteins	I) photophosphorylation	plastid	2704.81796	880.0066
[show peptides]	149	49	1.8	2	79.2	32.5	32	-0.795	AT5G62170.1	AT5G62170.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	2704.81796	880.0066
[show peptides]	149	48	2.8	1	27.8	32.5	32	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2704.81796	880.0066
[show peptides]	149	44	3.2	1	38.9	32.5	32	-0.283	AT4G28740.1	AT4G28740.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2704.81796	880.0066
[show peptides]	150	314	11.6	5	39.5	32.9	500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1194.33424	871.40338
[show peptides]	150	276	11.0	5	38.9	32.9	500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1194.33424	871.40338
[show peptides]	151	335	15.9	5	39.5	33.1	1500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	419.62125	866.02829
[show peptides]	151	207	12.1	3	36.4	33.1	1500	-0.561	AT1G65260.1	pTAC4, VIPP1, plastid transcriptionally active 4	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	419.62125	866.02829
[show peptides]	151	147	11.6	3	38.9	33.1	1500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	419.62125	866.02829
[show peptides]	151	72	4.7	2	40.0	33.1	1500	0.737	ATCG01100.1	NdhA	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	866.02829
[show peptides]	152	316	11.6	5	39.5	32.6	1150	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	616.05666	877.22264
[show peptides]	152	311	14.2	5	38.9	32.6	1150	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	616.05666	877.22264
[show peptides]	152	122	12.0	4	28.2	32.6	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.05666	877.22264
[show peptides]	153	338	17.6	5	36.4	32.9	1700	-0.561	AT1G65260.1	pTAC4, VIPP1, plastid transcriptionally active 4	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	303.55873	869.83036
[show peptides]	153	275	11.6	5	39.5	32.9	1700	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	303.55873	869.83036
[show peptides]	153	159	13.5	3	32.6	32.9	1700	-0.244	AT2G33800.1	Rps5, Ribosomal protein S5 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.55873	869.83036
[show peptides]	153	61	9.0	2	28.2	32.9	1700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	303.55873	869.83036
[show peptides]	153	37	2.2	1	40.0	32.9	1700	0.737	ATCG01100.1	NdhA	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	869.83036
[show peptides]	153	34	3.1	1	38.9	32.9	1700	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	303.55873	869.83036
[show peptides]	154	494	24.4	10	35.1	32.9	93	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2314.6683	870.91804
[show peptides]	154	390	23.4	7	35.3	32.9	93	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	2314.6683	870.91804
[show peptides]	154	363	18.4	7	35.0	32.9	93	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2314.6683	870.91804
[show peptides]	154	334	13.5	7	37.9	32.9	93	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2314.6683	870.91804
[show peptides]	154	212	12.0	4	44.6	32.9	93	0.550	AT5G46110.1	APE2, TPT, Glucose-6-phosphate/phosphate translocator-related	other transporters	III) transport	plastid	2314.6683	870.91804
[show peptides]	154	153	11.0	4	47.6	32.9	93	0.001	AT1G42970.1	GapB, glyceraldehyde-3-phosphate dehydrogenase B subunit	calvin cycle	II) carbon fixation	plastid	2314.6683	870.91804
[show peptides]	154	142	7.1	2	33.8	32.9	93	-0.055	AT4G25080.1	CHLM, magnesium-protoporphyrin IX methyltransferase	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2314.6683	870.91804
[show peptides]	154	134	9.8	3	42.8	32.9	93	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2314.6683	870.91804
[show peptides]	154	89	3.5	3	47.6	32.9	93	0.757	AT5G52540.1	Protein of unknown function (DUF819)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2314.6683	870.91804
[show peptides]	154	40	3.2	1	34.8	32.9	93	-0.555	AT5G24490.1	30S ribosomal protein, putative	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2314.6683	870.91804
[show peptides]	154	39	3.0	1	28.2	32.9	93	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2314.6683	870.91804
[show peptides]	154	37	1.6	1	56.8	32.9	93	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2314.6683	870.91804
[show peptides]	155	478	19.5	9	38.9	30.8	500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1194.33424	926.21069
[show peptides]	155	102	4.2	2	39.5	30.8	500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1194.33424	926.21069
[show peptides]	156	85	3.1	1	38.9	31.0	210	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1820.61171	920.0271
[show peptides]	156	37	1.9	1	46.7	31.0	210	0.036	AT5G47950.1	HXXXD-type acyl-transferase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1820.61171	920.0271
[show peptides]	156	37	1.6	1	56.8	31.0	210	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1820.61171	920.0271
[show peptides]	157	867	48.9	13	30.1	27.8	120	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1012.82903
[show peptides]	157	859	45.3	11	28.2	27.8	120	0.021	AT1G29930.1	Lhcb1.3, CAB1, AB140, CAB140	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1012.82903
[show peptides]	157	826	45.7	11	28.0	27.8	120	-0.006	AT2G34420.1	Lhcb1.5	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1012.82903
[show peptides]	157	679	46.6	9	28.2	27.8	120	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1012.82903
[show peptides]	157	552	34.0	7	28.6	27.8	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1012.82903
[show peptides]	157	345	33.3	8	29.5	27.8	120	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2194.54608	1012.82903
[show peptides]	157	140	12.5	3	28.7	27.8	120	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1012.82903
[show peptides]	157	107	8.5	2	43.0	27.8	120	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2194.54608	1012.82903
[show peptides]	157	94	6.8	2	42.9	27.8	120	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2194.54608	1012.82903
[show peptides]	157	42	0.9	1	95.4	27.8	120	-0.824	AT2G43160.1	ENTH/VHS family protein	amino acid metabolism	VI) other metabolic pathways	nucleus	2194.54608	1012.82903
[show peptides]	157	40	1.6	1	50.6	27.8	120	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	2194.54608	1012.82903
[show peptides]	157	34	1.0	1	56.5	27.8	120	-0.437	AT1G13460.1	Protein phosphatase 2A regulatory B subunit family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2194.54608	1012.82903
[show peptides]	157	33	9.4	2	17.1	27.8	120	-0.587	AT1G05730.1	Eukaryotic protein of unknown function (DUF842)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2194.54608	1012.82903
[show peptides]	158	699	28.0	17	38.9	31.0	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1669.28958	920.5225
[show peptides]	158	396	25.9	7	35.3	31.0	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1669.28958	920.5225
[show peptides]	158	317	14.2	6	39.5	31.0	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1669.28958	920.5225
[show peptides]	158	60	4.5	1	28.2	31.0	260	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1669.28958	920.5225
[show peptides]	158	45	1.6	1	56.8	31.0	260	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1669.28958	920.5225
[show peptides]	158	39	1.1	1	70.0	31.0	260	0.015	AT5G66420.1	AT5G66420.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid new	1669.28958	920.5225
[show peptides]	159	601	22.7	11	38.9	30.8	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	924.14792
[show peptides]	159	164	7.9	3	39.5	30.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	924.14792
[show peptides]	159	96	7.3	2	29.2	30.8	560	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	1106.40251	924.14792
[show peptides]	159	62	3.4	1	51.8	30.8	560	0.252	ATCG00280.1	PsbC, CP43	b) photosystem II	I) photophosphorylation	plastid	1106.40251	924.14792
[show peptides]	159	52	4.8	1	27.7	30.8	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40251	924.14792
[show peptides]	159	51	5.0	1	24.2	30.8	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40251	924.14792
[show peptides]	159	37	4.1	1	26.0	30.8	560	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	924.14792
[show peptides]	160	1112	58.2	16	30.1	29.8	31	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2709.99045	953.27768
[show peptides]	160	819	33.4	13	31.2	29.8	31	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2709.99045	953.27768
[show peptides]	160	566	26.2	8	31.1	29.8	31	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2709.99045	953.27768
[show peptides]	160	217	11.2	4	28.2	29.8	31	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2709.99045	953.27768
[show peptides]	160	188	14.9	5	30.2	29.8	31	-0.097	AT2G40100.1	Lhcb4.3, CP29	b) photosystem II	I) photophosphorylation	plastid	2709.99045	953.27768
[show peptides]	160	180	12.3	4	28.2	29.8	31	-0.602	AT5G52440.1	HCF106, Bacterial sec-independent translocation protein mttA/Hcf106	protein transporters	III) transport	plastid	2709.99045	953.27768
[show peptides]	160	156	9.7	4	33.8	29.8	31	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	2709.99045	953.27768
[show peptides]	160	52	3.9	1	30.4	29.8	31	-0.194	AT3G23400.1	FIB4, Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2709.99045	953.27768
[show peptides]	160	48	0.5	2	306.2	29.8	31	-0.288	AT4G13750.1	NOV, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2709.99045	953.27768
[show peptides]	160	46	4.6	1	28.3	29.8	31	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2709.99045	953.27768
[show peptides]	160	43	2.0	1	28.3	29.8	31	-0.728	AT1G14510.1	AL7, alfin-like 7	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	2709.99045	953.27768
[show peptides]	161	593	22.7	13	38.9	30.7	1000	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	161	298	19.6	7	35.1	30.7	1000	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	161	291	12.0	5	28.2	30.7	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	161	214	15.4	5	35.0	30.7	1000	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	161	211	10.8	4	39.5	30.7	1000	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	161	187	12.1	4	28.6	30.7	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	161	142	9.3	3	31.1	30.7	1000	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	161	83	6.6	2	31.2	30.7	1000	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	725.80741	928.05294
[show peptides]	162	555	22.7	10	38.9	30.5	1150	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	616.05666	932.31042
[show peptides]	162	257	12.0	5	28.2	30.5	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.05666	932.31042
[show peptides]	162	226	15.4	5	35.1	30.5	1150	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	616.05666	932.31042
[show peptides]	162	190	12.1	4	28.6	30.5	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.05666	932.31042
[show peptides]	162	88	7.9	3	39.5	30.5	1150	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	616.05666	932.31042
[show peptides]	162	52	5.9	2	31.1	30.5	1150	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	616.05666	932.31042
[show peptides]	163	555	22.7	12	38.9	30.7	830	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	163	265	18.4	6	35.1	30.7	830	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	163	209	12.0	4	28.2	30.7	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	163	196	15.4	5	35.0	30.7	830	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	163	136	12.1	3	28.6	30.7	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	163	88	4.2	2	39.5	30.7	830	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	163	81	5.9	2	31.1	30.7	830	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	163	42	4.4	1	25.0	30.7	830	0.024	AT3G08940.1	Lhcb4.2, CP29 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	829.76771	928.71108
[show peptides]	164	349	14.2	6	38.9	30.5	700	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	951.78752	933.2638
[show peptides]	164	33	3.1	1	31.3	30.5	700	-0.008	AT1G16880.1	Uridylyltransferase-related	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	951.78752	933.2638
[show peptides]	165	695	34.8	10	31.2	29.9	78	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2392.13012	949.20073
[show peptides]	165	658	41.7	14	33.8	29.9	78	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	2392.13012	949.20073
[show peptides]	165	610	29.7	8	31.1	29.9	78	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2392.13012	949.20073
[show peptides]	165	363	24.3	7	30.1	29.9	78	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2392.13012	949.20073
[show peptides]	165	230	17.0	4	29.7	29.9	78	-0.471	AT3G25920.1	Rpl15, Ribosomal protein L15	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2392.13012	949.20073
[show peptides]	165	185	12.5	4	42.8	29.9	78	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2392.13012	949.20073
[show peptides]	165	166	14.1	3	28.3	29.9	78	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2392.13012	949.20073
[show peptides]	165	140	9.1	3	33.5	29.9	78	0.210	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein (AT1G24360.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13012	949.20073
[show peptides]	165	135	10.1	2	26.5	29.9	78	-0.268	AT1G18170.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein (AT1G18170.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13012	949.20073
[show peptides]	165	130	16.8	3	27.7	29.9	78	-0.758	AT4G23890.1	AT4G23890.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2392.13012	949.20073
[show peptides]	165	113	8.9	2	29.3	29.9	78	-0.169	AT2G43030.1	Rpl3, Ribosomal protein L3 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2392.13012	949.20073
[show peptides]	165	111	14.6	3	27.6	29.9	78	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2392.13012	949.20073
[show peptides]	165	110	6.4	2	33.3	29.9	78	-0.430	AT5G11450.1	Mog1, PsbP family protein (AT5G11450.1)	b) photosystem II	I) photophosphorylation	plastid	2392.13012	949.20073
[show peptides]	165	108	9.5	3	30.4	29.9	78	-0.194	AT3G23400.1	FIB4, Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13012	949.20073
[show peptides]	165	104	5.7	2	34.4	29.9	78	-0.209	AT1G74070.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (AT1G74070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13012	949.20073
[show peptides]	165	102	7.1	2	33.9	29.9	78	-0.313	AT1G66670.1	Clp-P3, ClpP3, NClpP3, Clp protease proteolytic subunit 3	proteases	V) protein folding & processing	plastid	2392.13012	949.20073
[show peptides]	165	67	12.2	2	29.5	29.9	78	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13012	949.20073
[show peptides]	165	66	8.5	2	28.6	29.9	78	-0.526	AT4G25130.1	PMSR4, peptide met sulfoxide reductase 4	antioxidants	VI) other metabolic pathways	plastid	2392.13012	949.20073
[show peptides]	165	45	7.8	2	42.6	29.9	78	-0.441	AT1G49970.1	Clp-R1, ClpR1, NClpP5, SVR2, Clp protease proteolytic subunit 1	proteases	V) protein folding & processing	plastid	2392.13012	949.20073
[show peptides]	165	42	6.4	1	24.4	29.9	78	-0.193	AT5G07020.1	Proline-rich family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2392.13012	949.20073
[show peptides]	165	42	7.2	2	26.9	29.9	78	-0.288	ATCG00160.1	Rps2, Ribosomal protein S2	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2392.13012	949.20073
[show peptides]	165	42	4.3	1	28.6	29.9	78	-0.251	AT5G47110.1	LIL3:2, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2392.13012	949.20073
[show peptides]	165	40	2.3	1	51.9	29.9	78	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2392.13012	949.20073
[show peptides]	165	40	3.1	1	32.7	29.9	78	-0.324	AT1G65230.1	AT1G65230.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2392.13012	949.20073
[show peptides]	165	39	3.0	1	28.2	29.9	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2392.13012	949.20073
[show peptides]	165	37	2.9	2	27.5	29.9	78	-0.566	AT5G53030.1	Protein of unknown function (DUF688)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2392.13012	949.20073
[show peptides]	165	36	1.6	1	56.8	29.9	78	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2392.13012	949.20073
[show peptides]	166	770	38.4	11	33.3	30.4	19	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase	calvin cycle	II) carbon fixation	plastid	2851.11209	937.40226
[show peptides]	166	551	41.8	9	30.1	30.4	19	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	475	27.1	11	31.8	30.4	19	-0.534	AT5G44650.1	CEST, AtCEST, Encodes a chloroplast protein that induces tolerance to multiple environmental stress	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11209	937.40226
[show peptides]	166	354	21.6	6	31.2	30.4	19	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	318	16.6	4	31.1	30.4	19	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	286	26.5	7	35.1	30.4	19	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	285	19.1	4	24.4	30.4	19	-0.193	AT5G07020.1	Proline-rich family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11209	937.40226
[show peptides]	166	268	20.6	5	30.5	30.4	19	-0.396	AT1G07320.1	Rpl4, Ribosomal protein L4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2851.11209	937.40226
[show peptides]	166	251	23.0	6	35.0	30.4	19	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	245	10.8	4	35.7	30.4	19	-0.022	AT4G22890.1	PGR5-LIKE A	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	171	11.6	3	30.4	30.4	19	-0.194	AT3G23400.1	FIB4, Plastid-lipid associated protein PAP, fibrillin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11209	937.40226
[show peptides]	166	141	12.4	3	28.6	30.4	19	-0.251	AT5G47110.1	LIL3:2, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	80	4.5	1	26.5	30.4	19	-0.268	AT1G18170.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein (AT1G18170.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11209	937.40226
[show peptides]	166	57	3.6	1	33.4	30.4	19	-0.102	AT5G37360.1	AT5G37360.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2851.11209	937.40226
[show peptides]	166	55	1.8	2	79.2	30.4	19	-0.795	AT5G62170.1	AT5G62170.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	2851.11209	937.40226
[show peptides]	166	41	3.9	1	27.5	30.4	19	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2851.11209	937.40226
[show peptides]	166	37	3.3	1	33.7	30.4	19	-0.263	AT1G76080.1	ATCDSP32, CDSP32, chloroplastic drought-induced stress protein of 32 kD	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2851.11209	937.40226
[show peptides]	166	33	2.4	1	32.5	30.4	19	-0.317	AT3G24590.1	PLSP1, plastidic type I signal peptidase 1	proteases	V) protein folding & processing	plastid	2851.11209	937.40226
[show peptides]	167	144	8.2	3	38.9	30.5	1700	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	303.55873	932.42964
[show peptides]	167	37	2.2	1	40.0	30.5	1700	0.737	ATCG01100.1	NdhA	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	932.42964
[show peptides]	168	433	19.5	7	38.9	30.5	1500	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	419.62125	934.33933
[show peptides]	168	164	10.8	4	39.5	30.5	1500	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	419.62125	934.33933
[show peptides]	168	104	7.1	2	29.6	30.5	1500	-0.285	AT5G16390.1	CAC1, CAC1A, BCCP, BCCP1, chloroplastic acetylcoenzyme A carboxylase 1	fatty acid metabolism	VI) other metabolic pathways	plastid	419.62125	934.33933
[show peptides]	168	96	9.0	3	28.2	30.5	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62125	934.33933
[show peptides]	168	41	2.2	1	40.0	30.5	1500	0.737	ATCG01100.1	NdhA	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	934.33933
[show peptides]	169	442	23.4	7	31.1	29.2	180	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	1955.35967	971.31421
[show peptides]	169	278	21.0	6	33.8	29.2	180	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	1955.35967	971.31421
[show peptides]	169	268	25.1	6	31.2	29.2	180	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	1955.35967	971.31421
[show peptides]	169	261	12.0	5	28.2	29.2	180	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1955.35967	971.31421
[show peptides]	169	166	12.1	4	28.6	29.2	180	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	1955.35967	971.31421
[show peptides]	169	83	4.6	1	28.3	29.2	180	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1955.35967	971.31421
[show peptides]	169	80	7.5	2	30.1	29.2	180	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	1955.35967	971.31421
[show peptides]	169	46	4.2	1	33.9	29.2	180	-0.313	AT1G66670.1	Clp-P3, ClpP3, NClpP3, Clp protease proteolytic subunit 3	proteases	V) protein folding & processing	plastid	1955.35967	971.31421
[show peptides]	169	46	1.8	1	45.0	29.2	180	-1.474	AT1G07350.1	RNA-binding (RRM/RBD/RNP motifs) family protein (AT1G07350.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	1955.35967	971.31421
[show peptides]	169	37	4.1	1	42.6	29.2	180	-0.441	AT1G49970.1	Clp-R1, ClpR1, NClpP5, SVR2, Clp protease proteolytic subunit 1	proteases	V) protein folding & processing	plastid	1955.35967	971.31421
[show peptides]	169	36	5.6	1	29.5	29.2	180	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1955.35967	971.31421
[show peptides]	170	864	45.6	13	31.2	29.0	220	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	712	38.3	10	31.1	29.0	220	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	312	12.0	5	28.2	29.0	220	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	262	17.7	4	33.8	29.0	220	-0.388	AT2G20890.1	Psb29, THF1	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	247	13.2	4	28.2	29.0	220	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	205	11.9	4	38.9	29.0	220	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	147	8.7	3	28.7	29.0	220	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	122	8.4	2	28.3	29.0	220	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1815.98325	977.67701
[show peptides]	170	113	10.7	3	30.1	29.0	220	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	68	5.4	1	29.7	29.0	220	-0.471	AT3G25920.1	Rpl15, Ribosomal protein L15	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1815.98325	977.67701
[show peptides]	170	61	7.0	2	27.5	29.0	220	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1815.98325	977.67701
[show peptides]	170	44	4.2	1	33.9	29.0	220	-0.313	AT1G66670.1	Clp-P3, ClpP3, NClpP3, Clp protease proteolytic subunit 3	proteases	V) protein folding & processing	plastid	1815.98325	977.67701
[show peptides]	170	39	2.0	1	28.3	29.0	220	-0.728	AT1G14510.1	AL7, alfin-like 7	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	1815.98325	977.67701
[show peptides]	170	37	1.6	1	56.8	29.0	220	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1815.98325	977.67701
[show peptides]	170	36	1.6	1	50.6	29.0	220	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	1815.98325	977.67701
[show peptides]	171	403	23.4	7	31.1	28.5	1000	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	725.80741	990.42518
[show peptides]	171	371	28.6	8	31.2	28.5	1000	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	725.80741	990.42518
[show peptides]	171	300	12.0	5	28.2	28.5	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.80741	990.42518
[show peptides]	171	235	12.1	4	28.6	28.5	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.80741	990.42518
[show peptides]	171	52	7.5	2	30.1	28.5	1000	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	725.80741	990.42518
[show peptides]	172	569	37.6	9	31.2	28.6	830	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	829.76771	989.941
[show peptides]	172	517	32.4	7	31.1	28.6	830	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	829.76771	989.941
[show peptides]	172	203	11.2	4	28.2	28.6	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.76771	989.941
[show peptides]	172	96	10.7	3	30.1	28.6	830	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	829.76771	989.941
[show peptides]	172	36	1.6	1	56.8	28.6	830	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	829.76771	989.941
[show peptides]	173	418	23.4	7	31.1	28.4	1150	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	616.05666	993.48627
[show peptides]	173	391	28.6	8	31.2	28.4	1150	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	616.05666	993.48627
[show peptides]	173	282	12.0	5	28.2	28.4	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.05666	993.48627
[show peptides]	173	207	12.1	4	28.6	28.4	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.05666	993.48627
[show peptides]	173	99	11.1	3	30.1	28.4	1150	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	616.05666	993.48627
[show peptides]	174	236	13.8	5	31.1	28.4	1500	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	419.62125	993.53076
[show peptides]	174	175	12.0	4	28.2	28.4	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62125	993.53076
[show peptides]	174	120	10.1	3	31.2	28.4	1500	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	419.62125	993.53076
[show peptides]	175	775	43.6	12	30.1	28.1	75	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2411.09197	1005.15298
[show peptides]	175	646	44.1	18	37.4	28.1	75	-0.009	AT3G01500.2	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 2)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2411.09197	1005.15298
[show peptides]	175	297	19.9	5	29.3	28.1	75	-0.169	AT2G43030.1	Rpl3, Ribosomal protein L3 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.09197	1005.15298
[show peptides]	175	238	24.1	6	27.6	28.1	75	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2411.09197	1005.15298
[show peptides]	175	174	11.9	4	42.5	28.1	75	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2411.09197	1005.15298
[show peptides]	175	108	8.4	2	28.3	28.1	75	-0.277	AT4G01310.1	Rpl5, Ribosomal L5P family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.09197	1005.15298
[show peptides]	175	96	8.5	2	32.9	28.1	75	-0.073	AT1G08640.1	CJD1, Chloroplast J-like domain 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2411.09197	1005.15298
[show peptides]	175	76	3.8	2	51.9	28.1	75	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2411.09197	1005.15298
[show peptides]	175	74	4.1	1	31.5	28.1	75	-0.043	AT5G45390.1	Clp-P4, ClpP4, NClpP4, Clp protease P4	proteases	V) protein folding & processing	plastid	2411.09197	1005.15298
[show peptides]	175	67	6.7	2	28.2	28.1	75	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2411.09197	1005.15298
[show peptides]	175	50	2.5	1	30.4	28.1	75	-0.390	AT3G63190.1	RRF, HFP108, cpRRF, AtcpRRF, ribosome recycling factor, chloroplast precursor	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2411.09197	1005.15298
[show peptides]	175	49	3.7	1	30.6	28.1	75	-0.300	AT5G14660.1	PDF1B, DEF2, ATDEF2, peptide deformylase 1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2411.09197	1005.15298
[show peptides]	175	42	7.2	2	26.9	28.1	75	-0.288	ATCG00160.1	Rps2, Ribosomal protein S2	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.09197	1005.15298
[show peptides]	175	40	5.0	1	25.2	28.1	75	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.09197	1005.15298
[show peptides]	175	35	2.9	1	29.2	28.1	75	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	2411.09197	1005.15298
[show peptides]	176	1442	59.6	21	30.1	28.1	30	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2716.04408	1003.29388
[show peptides]	176	285	25.1	5	28.2	28.1	30	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2716.04408	1003.29388
[show peptides]	176	237	33.3	6	30.2	28.1	30	-0.097	AT2G40100.1	Lhcb4.3, CP29	b) photosystem II	I) photophosphorylation	plastid	2716.04408	1003.29388
[show peptides]	176	216	14.8	4	31.1	28.1	30	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2716.04408	1003.29388
[show peptides]	176	210	12.1	4	28.6	28.1	30	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2716.04408	1003.29388
[show peptides]	176	66	6.6	2	31.2	28.1	30	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2716.04408	1003.29388
[show peptides]	176	51	3.5	1	27.8	28.1	30	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2716.04408	1003.29388
[show peptides]	176	35	1.9	1	47.6	28.1	30	-0.473	AT3G13820.1	F-box and associated interaction domains-containing protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	2716.04408	1003.29388
[show peptides]	176	34	1.0	1	56.5	28.1	30	-0.437	AT1G13460.1	Protein phosphatase 2A regulatory B subunit family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	2716.04408	1003.29388
[show peptides]	177	223	12.0	4	28.2	28.2	1700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	303.55873	1001.76205
[show peptides]	177	204	12.8	4	31.1	28.2	1700	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	303.55873	1001.76205
[show peptides]	177	170	17.4	5	31.2	28.2	1700	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	303.55873	1001.76205
[show peptides]	178	475	18.7	9	51.6	25.9	170	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	1984.69384	1075.21962
[show peptides]	178	438	17.9	8	51.9	25.9	170	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1984.69384	1075.21962
[show peptides]	178	203	22.1	5	27.5	25.9	170	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1984.69384	1075.21962
[show peptides]	178	70	2.6	1	56.0	25.9	170	0.113	ATCG00680.1	PsbB, CP47	b) photosystem II	I) photophosphorylation	plastid	1984.69384	1075.21962
[show peptides]	178	44	1.9	1	57.4	25.9	170	-0.328	AT4G37930.1	SHM1, STM, SHMT1, serine transhydroxymethyltransferase 1	amino acid metabolism	VI) other metabolic pathways	mitochondrion	1984.69384	1075.21962
[show peptides]	178	35	6.7	1	29.5	25.9	170	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1984.69384	1075.21962
[show peptides]	178	33	1.7	1	39.5	25.9	170	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1984.69384	1075.21962
[show peptides]	179	1094	48.9	15	30.1	27.1	12	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2977.14127	1036.65533
[show peptides]	179	368	27.5	6	29.3	27.1	12	0.116	AT3G04790.1	Ribose 5-phosphate isomerase, type A protein	calvin cycle	II) carbon fixation	plastid	2977.14127	1036.65533
[show peptides]	179	251	27.8	6	29.5	27.1	12	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2977.14127	1036.65533
[show peptides]	179	243	23.3	5	31.7	27.1	12	-0.226	AT1G71500.1	Rieske (2Fe-2S) domain-containing protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2977.14127	1036.65533
[show peptides]	179	193	13.6	4	29.2	27.1	12	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	2977.14127	1036.65533
[show peptides]	179	148	10.2	3	35.1	27.1	12	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2977.14127	1036.65533
[show peptides]	179	122	8.2	3	28.2	27.1	12	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2977.14127	1036.65533
[show peptides]	179	59	6.5	2	31.5	27.1	12	-0.043	AT5G45390.1	Clp-P4, ClpP4, NClpP4, Clp protease P4	proteases	V) protein folding & processing	plastid	2977.14127	1036.65533
[show peptides]	179	50	2.8	2	59.4	27.1	12	-1.449	AT5G63550.1	DEK domain-containing chromatin associated protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid new	2977.14127	1036.65533
[show peptides]	179	41	4.1	1	32.9	27.1	12	-0.073	AT1G08640.1	CJD1, Chloroplast J-like domain 1	fatty acid metabolism	VI) other metabolic pathways	plastid	2977.14127	1036.65533
[show peptides]	179	39	4.6	2	53.0	27.1	12	0.025	AT2G24270.1	ALDH11A3, aldehyde dehydrogenase 11A3	unassigned proteins	VII) proteins (so far) not assigned to a functional category	cytosol	2977.14127	1036.65533
[show peptides]	179	37	1.6	1	56.8	27.1	12	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2977.14127	1036.65533
[show peptides]	180	124	7.9	2	31.1	26.4	210	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	1815.98048	1057.95112
[show peptides]	180	48	4.9	1	31.2	26.4	210	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	1815.98048	1057.95112
[show peptides]	180	41	1.6	1	56.8	26.4	210	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1815.98048	1057.95112
[show peptides]	181	442	23.6	7	30.1	26.7	1000	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	725.80741	1049.53177
[show peptides]	181	307	12.0	5	28.2	26.7	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.80741	1049.53177
[show peptides]	181	219	12.1	4	28.6	26.7	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.80741	1049.53177
[show peptides]	181	196	13.2	4	28.2	26.7	1000	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	725.80741	1049.53177
[show peptides]	181	52	0.5	2	306.2	26.7	1000	-0.288	AT4G13750.1	NOV, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	725.80741	1049.53177
[show peptides]	181	35	2.9	1	29.2	26.7	1000	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	725.80741	1049.53177
[show peptides]	182	372	22.9	6	30.1	26.6	1150	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	616.05666	1050.40354
[show peptides]	182	284	12.0	5	28.2	26.6	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.05666	1050.40354
[show peptides]	182	208	12.1	4	28.6	26.6	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.05666	1050.40354
[show peptides]	182	177	13.2	4	28.2	26.6	1150	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	616.05666	1050.40354
[show peptides]	182	42	0.5	2	306.2	26.6	1150	-0.288	AT4G13750.1	NOV, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	616.05666	1050.40354
[show peptides]	183	350	23.6	6	30.1	26.7	830	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	829.76771	1047.68968
[show peptides]	183	159	11.2	3	28.2	26.7	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.76771	1047.68968
[show peptides]	183	127	12.1	3	28.6	26.7	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.76771	1047.68968
[show peptides]	183	81	7.0	2	29.2	26.7	830	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	829.76771	1047.68968
[show peptides]	184	272	17.9	5	30.1	26.7	1500	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	419.62125	1049.00237
[show peptides]	184	222	12.0	4	28.2	26.7	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62125	1049.00237
[show peptides]	184	101	14.7	3	25.3	26.7	1500	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1049.00237
[show peptides]	184	48	2.9	1	29.2	26.7	1500	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	419.62125	1049.00237
[show peptides]	185	608	43.1	8	28.2	26.0	28	0.021	AT1G29930.1	Lhcb1.3, CAB1, AB140, CAB140	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	570	43.4	8	28.0	26.0	28	-0.006	AT2G34420.1	Lhcb1.5	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	568	50.4	10	30.1	26.0	28	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	518	44.4	7	28.2	26.0	28	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	504	61.7	11	26.8	26.0	28	-0.083	AT5G20720.1	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20	Cpn20	V) protein folding & processing	plastid	2741.69256	1070.6957
[show peptides]	185	459	27.1	8	29.2	26.0	28	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	372	32.5	6	28.6	26.0	28	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	342	32.2	9	29.5	26.0	28	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2741.69256	1070.6957
[show peptides]	185	264	22.1	5	27.5	26.0	28	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	172	10.9	3	28.0	26.0	28	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	136	6.8	2	28.7	26.0	28	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	88	6.3	2	27.8	26.0	28	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2741.69256	1070.6957
[show peptides]	185	76	4.5	1	31.1	26.0	28	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2741.69256	1070.6957
[show peptides]	185	76	4.2	1	31.4	26.0	28	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2741.69256	1070.6957
[show peptides]	185	49	1.5	1	65.3	26.0	28	-0.315	AT3G22330.1	PMH2, ATRH53, putative mitochondrial RNA helicase 2	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	mitochondrion	2741.69256	1070.6957
[show peptides]	186	265	17.9	5	30.1	26.6	1700	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	303.55873	1051.47915
[show peptides]	186	192	12.0	4	28.2	26.6	1700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	303.55873	1051.47915
[show peptides]	186	105	14.7	3	25.3	26.6	1700	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1051.47915
[show peptides]	187	981	53.3	18	29.5	26.0	76	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.11858	1071.32738
[show peptides]	187	675	58.1	12	26.8	26.0	76	-0.083	AT5G20720.1	Cpn20, CPN10, CHCPN10, ATCPN21, CPN21, chaperonin 20	Cpn20	V) protein folding & processing	plastid	2405.11858	1071.32738
[show peptides]	187	384	26.1	7	27.7	26.0	76	-0.258	AT3G52150.1	RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G52150.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2405.11858	1071.32738
[show peptides]	187	331	26.4	7	28.5	26.0	76	-0.242	AT5G16710.1	DHAR3, dehydroascorbate reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.11858	1071.32738
[show peptides]	187	292	24.1	6	27.6	26.0	76	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2405.11858	1071.32738
[show peptides]	187	288	12.0	5	28.2	26.0	76	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2405.11858	1071.32738
[show peptides]	187	258	27.5	6	29.2	26.0	76	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	2405.11858	1071.32738
[show peptides]	187	231	31.3	6	23.2	26.0	76	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2405.11858	1071.32738
[show peptides]	187	222	13.3	4	42.8	26.0	76	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2405.11858	1071.32738
[show peptides]	187	215	12.1	4	28.6	26.0	76	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2405.11858	1071.32738
[show peptides]	187	203	17.1	4	31.4	26.0	76	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2405.11858	1071.32738
[show peptides]	187	189	13.2	4	28.2	26.0	76	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	2405.11858	1071.32738
[show peptides]	187	181	17.0	4	28.0	26.0	76	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2405.11858	1071.32738
[show peptides]	187	167	14.6	4	27.8	26.0	76	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2405.11858	1071.32738
[show peptides]	187	160	14.9	4	34.6	26.0	76	-0.311	AT3G14110.1	FLU, Tetratricopeptide repeat (TPR)-like superfamily protein	TPR proteins	VI) other metabolic pathways	plastid	2405.11858	1071.32738
[show peptides]	187	126	5.7	3	51.9	26.0	76	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2405.11858	1071.32738
[show peptides]	187	54	14.6	2	23.2	26.0	76	-0.469	AT2G17695.1	AT2G17695.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2405.11858	1071.32738
[show peptides]	187	53	5.0	1	25.2	26.0	76	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2405.11858	1071.32738
[show peptides]	187	42	12.9	2	28.1	26.0	76	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23	b) photosystem II	I) photophosphorylation	plastid	2405.11858	1071.32738
[show peptides]	187	38	2.1	1	48.7	26.0	76	0.141	AT2G37500.1	Arginine biosynthesis protein ArgJ family	amino acid metabolism	VI) other metabolic pathways	plastid	2405.11858	1071.32738
[show peptides]	188	238	11.9	4	38.9	25.0	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1105.91487
[show peptides]	188	57	6.1	1	24.4	25.0	260	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	1105.91487
[show peptides]	188	45	1.6	1	56.8	25.0	260	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1670.65954	1105.91487
[show peptides]	189	441	44.1	11	29.5	25.5	12	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2965.45166	1090.87391
[show peptides]	189	373	27.1	8	29.2	25.5	12	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	2965.45166	1090.87391
[show peptides]	189	279	27.1	6	30.1	25.5	12	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2965.45166	1090.87391
[show peptides]	189	242	11.2	4	28.2	25.5	12	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2965.45166	1090.87391
[show peptides]	189	222	17.7	4	28.0	25.5	12	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2965.45166	1090.87391
[show peptides]	189	146	14.3	4	31.4	25.5	12	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2965.45166	1090.87391
[show peptides]	189	55	3.9	1	27.5	25.5	12	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2965.45166	1090.87391
[show peptides]	189	43	6.7	2	27.7	25.5	12	-0.258	AT3G52150.1	RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G52150.1)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2965.45166	1090.87391
[show peptides]	189	43	1.6	1	56.8	25.5	12	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2965.45166	1090.87391
[show peptides]	189	38	1.4	2	116.5	25.5	12	-0.419	AT1G68750.1	Phosphoenolpyruvate carboxylase 4, ATPPC4, PPC4	other proteins	II) carbon fixation	cytosol	2965.45166	1090.87391
[show peptides]	189	34	4.6	1	28.2	25.5	12	-0.170	AT3G62030.1	ROC4, rotamase CYP 4	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2965.45166	1090.87391
[show peptides]	190	159	12.0	4	28.2	24.7	700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	951.78752	1118.04605
[show peptides]	190	109	14.4	3	23.2	24.7	700	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	951.78752	1118.04605
[show peptides]	190	94	7.3	3	29.2	24.7	700	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	951.78752	1118.04605
[show peptides]	191	324	25.8	6	28.2	25.3	120	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1098.0449
[show peptides]	191	215	12.1	4	28.6	25.3	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1098.0449
[show peptides]	191	38	2.5	1	42.9	25.3	120	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2194.54608	1098.0449
[show peptides]	192	383	27.5	9	29.2	24.6	1500	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	379	36.8	9	23.2	24.6	1500	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1120.69295
[show peptides]	192	267	12.0	5	28.2	24.6	1500	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	238	21.1	5	25.2	24.6	1500	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1120.69295
[show peptides]	192	205	12.1	4	28.6	24.6	1500	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	178	13.2	4	28.2	24.6	1500	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	88	9.7	2	24.8	24.6	1500	-0.597	AT4G37925.1	NdhM	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	73	9.3	3	29.9	24.6	1500	-0.106	AT1G19150.1	Lhca6	a) photosystem I	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	42	6.8	1	27.7	24.6	1500	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	38	6.2	1	25.3	24.6	1500	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1120.69295
[show peptides]	192	32	1.2	1	66.2	24.6	1500	-0.886	AT1G40129.1	AT1G40129.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	419.62125	1120.69295
[show peptides]	193	398	14.2	7	28.2	24.8	1000	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	725.80741	1113.0498
[show peptides]	193	318	29.9	7	23.2	24.8	1000	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.80741	1113.0498
[show peptides]	193	297	13.6	5	28.6	24.8	1000	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	725.80741	1113.0498
[show peptides]	193	294	27.5	7	29.2	24.8	1000	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	725.80741	1113.0498
[show peptides]	193	283	14.7	5	28.2	24.8	1000	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	725.80741	1113.0498
[show peptides]	193	83	6.8	2	28.7	24.8	1000	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	725.80741	1113.0498
[show peptides]	194	639	42.6	9	27.7	24.9	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	194	614	27.5	11	29.2	24.9	560	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	194	378	26.0	7	22.6	24.9	560	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	194	272	22.8	5	26.0	24.9	560	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	194	202	22.2	4	24.2	24.9	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	194	107	6.8	2	38.9	24.9	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	194	78	9.0	1	15.2	24.9	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	194	54	1.7	1	39.5	24.9	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1112.09004
[show peptides]	195	364	13.5	6	28.2	24.7	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.05666	1118.58295
[show peptides]	195	350	27.5	7	29.2	24.7	1150	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	616.05666	1118.58295
[show peptides]	195	341	36.8	9	23.2	24.7	1150	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.05666	1118.58295
[show peptides]	195	274	13.6	5	28.6	24.7	1150	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	616.05666	1118.58295
[show peptides]	195	257	14.7	5	28.2	24.7	1150	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	616.05666	1118.58295
[show peptides]	195	52	6.8	2	28.7	24.7	1150	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	616.05666	1118.58295
[show peptides]	195	51	5.0	1	25.2	24.7	1150	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.05666	1118.58295
[show peptides]	195	41	3.7	1	29.9	24.7	1150	-0.106	AT1G19150.1	Lhca6	a) photosystem I	I) photophosphorylation	plastid	616.05666	1118.58295
[show peptides]	196	276	12.0	5	28.2	24.7	830	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	829.76771	1116.62417
[show peptides]	196	276	29.9	6	23.2	24.7	830	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	829.76771	1116.62417
[show peptides]	196	194	12.1	4	28.6	24.7	830	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	829.76771	1116.62417
[show peptides]	196	192	11.7	5	29.2	24.7	830	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	829.76771	1116.62417
[show peptides]	196	168	13.2	4	28.2	24.7	830	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	829.76771	1116.62417
[show peptides]	196	58	4.8	1	27.7	24.7	830	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	829.76771	1116.62417
[show peptides]	197	314	27.5	8	29.2	24.4	1700	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	303.55873	1129.52764
[show peptides]	197	292	32.8	7	23.2	24.4	1700	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.55873	1129.52764
[show peptides]	197	252	12.0	5	28.2	24.4	1700	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	303.55873	1129.52764
[show peptides]	197	194	12.1	4	28.6	24.4	1700	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	303.55873	1129.52764
[show peptides]	197	59	5.0	1	25.2	24.4	1700	-0.349	ATCG00800.1	Rps3, Plastid ribosomal protein S3	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.55873	1129.52764
[show peptides]	197	45	3.7	2	29.9	24.4	1700	-0.106	AT1G19150.1	Lhca6	a) photosystem I	I) photophosphorylation	plastid	303.55873	1129.52764
[show peptides]	197	38	6.2	1	25.3	24.4	1700	-0.192	ATCG00430.1	NdhK	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1129.52764
[show peptides]	197	38	5.1	1	24.8	24.4	1700	-0.597	AT4G37925.1	NdhM	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1129.52764
[show peptides]	198	595	43.0	13	29.5	25.1	220	-0.026	AT3G01500.1	CA1, ATBCA1, SABP3, ATSABP3, carbonic anhydrase 1 (Isoform 1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1814.26943	1104.22651
[show peptides]	198	414	27.9	7	27.5	25.1	220	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1814.26943	1104.22651
[show peptides]	198	328	12.7	6	28.2	25.1	220	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1814.26943	1104.22651
[show peptides]	198	230	17.7	4	28.0	25.1	220	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	1814.26943	1104.22651
[show peptides]	198	222	13.2	4	28.2	25.1	220	0.003	AT2G34430.1	Lhcb1.4	b) photosystem II	I) photophosphorylation	plastid	1814.26943	1104.22651
[show peptides]	198	217	12.1	4	28.6	25.1	220	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	1814.26943	1104.22651
[show peptides]	198	148	22.9	4	23.2	25.1	220	-0.495	ATCG00380.1	Rps4, Plastid ribosomal protein S4	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1814.26943	1104.22651
[show peptides]	198	147	8.7	3	28.7	25.1	220	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	1814.26943	1104.22651
[show peptides]	198	67	4.2	1	31.4	25.1	220	-0.006	AT5G38660.1	APE1, acclimation of photosynthesis to environment	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1814.26943	1104.22651
[show peptides]	198	61	3.7	1	38.9	25.1	220	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1814.26943	1104.22651
[show peptides]	198	43	1.6	1	50.6	25.1	220	-0.644	AT1G16690.1	Enhancer of polycomb-like transcription factor protein (AT1G16690.1)	protein biosynthesis	IV) nucleic acid biosynthesis & processing	nucleus	1814.26943	1104.22651
[show peptides]	198	42	1.6	1	56.8	25.1	220	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1814.26943	1104.22651
[show peptides]	199	616	30.2	8	28.0	24.5	47	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2583.85609	1125.91318
[show peptides]	199	611	44.3	11	23.8	24.5	47	-0.291	AT4G25100.1	FSD1, ATFSD1	antioxidants	VI) other metabolic pathways	cytosol	2583.85609	1125.91318
[show peptides]	199	594	31.6	9	31.1	24.5	47	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2583.85609	1125.91318
[show peptides]	199	392	33.8	8	28.1	24.5	47	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23	b) photosystem II	I) photophosphorylation	plastid	2583.85609	1125.91318
[show peptides]	199	368	37.2	8	27.6	24.5	47	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2583.85609	1125.91318
[show peptides]	199	324	22.1	6	27.5	24.5	47	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2583.85609	1125.91318
[show peptides]	199	317	26.9	7	27.1	24.5	47	-0.355	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT3G26070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2583.85609	1125.91318
[show peptides]	199	286	22.8	6	27.8	24.5	47	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2583.85609	1125.91318
[show peptides]	199	234	24.7	4	28.4	24.5	47	-0.067	AT5G17170.1	ENH1, rubredoxin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2583.85609	1125.91318
[show peptides]	199	174	16.1	6	24.7	24.5	47	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2583.85609	1125.91318
[show peptides]	199	95	4.2	2	51.9	24.5	47	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2583.85609	1125.91318
[show peptides]	199	80	9.6	2	25.5	24.5	47	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2583.85609	1125.91318
[show peptides]	199	75	9.7	2	26.2	24.5	47	-0.175	AT3G08740.1	Elongation factor P (EF-P) family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2583.85609	1125.91318
[show peptides]	199	63	6.8	2	28.7	24.5	47	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2583.85609	1125.91318
[show peptides]	199	62	7.9	2	31.1	24.5	47	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2583.85609	1125.91318
[show peptides]	199	38	8.3	1	26.0	24.5	47	-0.475	AT1G67700.1	AT1G67700.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2583.85609	1125.91318
[show peptides]	199	34	6.0	1	29.1	24.5	47	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2583.85609	1125.91318
[show peptides]	200	688	27.9	10	28.0	24.1	78	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2396.67426	1140.2625
[show peptides]	200	657	46.6	15	24.7	24.1	78	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2396.67426	1140.2625
[show peptides]	200	465	21.1	8	31.1	24.1	78	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2396.67426	1140.2625
[show peptides]	200	375	24.0	6	28.1	24.1	78	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23	b) photosystem II	I) photophosphorylation	plastid	2396.67426	1140.2625
[show peptides]	200	307	24.8	6	27.5	24.1	78	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2396.67426	1140.2625
[show peptides]	200	260	14.6	5	42.5	24.1	78	-0.017	AT3G26650.1	GapA-1, glyceraldehyde 3-phosphate dehydrogenase A subunit 1	calvin cycle	II) carbon fixation	plastid	2396.67426	1140.2625
[show peptides]	200	196	16.9	6	27.1	24.1	78	-0.355	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT3G26070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2396.67426	1140.2625
[show peptides]	200	170	14.0	3	25.5	24.1	78	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2396.67426	1140.2625
[show peptides]	200	130	10.8	3	31.5	24.1	78	-0.017	AT3G51140.1	AT3G51140.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67426	1140.2625
[show peptides]	200	124	21.2	4	26.2	24.1	78	-0.175	AT3G08740.1	Elongation factor P (EF-P) family protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2396.67426	1140.2625
[show peptides]	200	121	12.7	3	24.0	24.1	78	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2396.67426	1140.2625
[show peptides]	200	113	12.5	2	28.4	24.1	78	-0.067	AT5G17170.1	ENH1, rubredoxin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2396.67426	1140.2625
[show peptides]	200	105	4.2	2	51.9	24.1	78	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2396.67426	1140.2625
[show peptides]	200	66	6.3	2	27.8	24.1	78	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2396.67426	1140.2625
[show peptides]	200	59	8.0	2	24.9	24.1	78	-0.317	AT4G27700.1	Rhodanese/Cell cycle control phosphatase superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2396.67426	1140.2625
[show peptides]	200	51	4.8	1	25.4	24.1	78	-0.338	AT3G10920.1	MSD1, MEE33, ATMSD1, manganese superoxide dismutase 1	antioxidants	VI) other metabolic pathways	mitochondrion	2396.67426	1140.2625
[show peptides]	200	43	4.7	1	27.7	24.1	78	0.138	AT1G44920.1	AT1G44920.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67426	1140.2625
[show peptides]	200	40	3.0	1	28.2	24.1	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2396.67426	1140.2625
[show peptides]	200	37	6.5	1	28.6	24.1	78	-0.178	AT3G56650.1	Mog1, PsbP family protein (AT3G56650.1)	b) photosystem II	I) photophosphorylation	plastid	2396.67426	1140.2625
[show peptides]	200	34	8.3	1	26.0	24.1	78	-0.475	AT1G67700.1	AT1G67700.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2396.67426	1140.2625
[show peptides]	201	646	30.2	8	28.0	24.5	29	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	585	26.0	8	31.1	24.5	29	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	581	28.3	10	27.5	24.5	29	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	423	33.2	8	30.1	24.5	29	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	402	33.8	7	28.1	24.5	29	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	306	20.0	5	31.1	24.5	29	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	236	16.9	5	27.1	24.5	29	-0.355	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein (AT3G26070.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2727.08164	1127.01038
[show peptides]	201	230	22.6	3	27.7	24.5	29	-0.001	AT3G61470.1	Lhca2	a) photosystem I	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	187	13.2	4	28.7	24.5	29	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	184	25.8	4	28.4	24.5	29	-0.067	AT5G17170.1	ENH1, rubredoxin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2727.08164	1127.01038
[show peptides]	201	169	12.6	3	24.7	24.5	29	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2727.08164	1127.01038
[show peptides]	201	166	6.7	3	28.2	24.5	29	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	97	11.8	3	31.2	24.5	29	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	82	4.9	1	24.9	24.5	29	-0.317	AT4G27700.1	Rhodanese/Cell cycle control phosphatase superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2727.08164	1127.01038
[show peptides]	201	74	2.3	1	51.9	24.5	29	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2727.08164	1127.01038
[show peptides]	201	56	11.6	2	24.1	24.5	29	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	2727.08164	1127.01038
[show peptides]	201	37	4.0	1	29.6	24.5	29	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2727.08164	1127.01038
[show peptides]	201	36	9.6	2	25.5	24.5	29	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2727.08164	1127.01038
[show peptides]	202	598	28.3	10	27.5	22.8	14	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2929.35057	1188.94495
[show peptides]	202	462	25.4	11	28.2	22.8	14	-0.170	AT3G62030.1	ROC4, rotamase CYP 4	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2929.35057	1188.94495
[show peptides]	202	286	27.4	6	29.1	22.8	14	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2929.35057	1188.94495
[show peptides]	202	102	10.6	2	28.0	22.8	14	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2929.35057	1188.94495
[show peptides]	202	82	9.3	2	30.1	22.8	14	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2929.35057	1188.94495
[show peptides]	202	39	4.0	1	29.6	22.8	14	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2929.35057	1188.94495
[show peptides]	203	723	30.9	9	28.0	24.2	120	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	617	59.6	11	28.7	24.2	120	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	286	26.4	6	28.6	24.2	120	-0.085	AT2G05070.1	Lhcb2.2	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	286	31.9	5	28.1	24.2	120	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	281	33.2	6	28.0	24.2	120	-0.006	AT2G34420.1	Lhcb1.5	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	260	14.7	4	31.1	24.2	120	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	241	28.3	5	24.7	24.2	120	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2194.54608	1137.42263
[show peptides]	203	119	10.9	2	27.5	24.2	120	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	60	2.3	1	51.9	24.2	120	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2194.54608	1137.42263
[show peptides]	203	54	5.9	1	28.4	24.2	120	-0.067	AT5G17170.1	ENH1, rubredoxin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2194.54608	1137.42263
[show peptides]	203	48	5.6	1	24.1	24.2	120	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	2194.54608	1137.42263
[show peptides]	203	42	6.6	1	25.5	24.2	120	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2194.54608	1137.42263
[show peptides]	204	527	24.2	8	28.0	23.7	210	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	1816.14408	1156.87451
[show peptides]	204	450	27.9	7	27.5	23.7	210	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1816.14408	1156.87451
[show peptides]	204	336	22.3	8	29.8	23.7	210	-0.058	AT5G06290.1	PrxB, 2-cysteine peroxiredoxin B	antioxidants	VI) other metabolic pathways	plastid	1816.14408	1156.87451
[show peptides]	204	306	22.9	7	29.1	23.7	210	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1816.14408	1156.87451
[show peptides]	204	210	15.1	4	28.7	23.7	210	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	1816.14408	1156.87451
[show peptides]	204	188	24.0	5	28.1	23.7	210	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23	b) photosystem II	I) photophosphorylation	plastid	1816.14408	1156.87451
[show peptides]	204	151	11.2	3	28.2	23.7	210	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1816.14408	1156.87451
[show peptides]	204	109	10.5	2	31.1	23.7	210	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	1816.14408	1156.87451
[show peptides]	204	80	3.7	1	38.9	23.7	210	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1816.14408	1156.87451
[show peptides]	204	79	4.2	2	51.9	23.7	210	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	1816.14408	1156.87451
[show peptides]	204	78	8.5	2	24.7	23.7	210	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1816.14408	1156.87451
[show peptides]	204	67	7.9	2	27.6	23.7	210	-0.231	AT3G25770.1	AOC2, allene oxide cyclase 2	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	1816.14408	1156.87451
[show peptides]	204	66	5.9	1	28.4	23.7	210	-0.067	AT5G17170.1	ENH1, rubredoxin family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1816.14408	1156.87451
[show peptides]	204	40	1.6	1	56.8	23.7	210	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1816.14408	1156.87451
[show peptides]	205	701	32.2	13	27.5	22.5	220	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1814.32105	1202.57063
[show peptides]	205	381	31.2	8	29.1	22.5	220	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1814.32105	1202.57063
[show peptides]	205	206	17.7	4	28.0	22.5	220	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	1814.32105	1202.57063
[show peptides]	205	34	3.7	1	28.2	22.5	220	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	1814.32105	1202.57063
[show peptides]	205	33	2.3	1	32.3	22.5	220	-0.198	AT1G02560.1	Clp-P5, ClpP5, NClpP5, NClpP1, nuclear encoded Clp protease 5	proteases	V) protein folding & processing	plastid	1814.32105	1202.57063
[show peptides]	206	715	34.7	10	28.0	23.2	260	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	536	41.0	9	24.4	23.2	260	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	348	20.0	5	24.1	23.2	260	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	314	19.3	6	38.9	23.2	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	180	17.1	4	27.5	23.2	260	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	134	13.2	3	29.1	23.2	260	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1670.65954	1174.6268
[show peptides]	206	133	23.4	3	21.0	23.2	260	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	130	12.8	3	29.8	23.2	260	-0.058	AT5G06290.1	PrxB, 2-cysteine peroxiredoxin B	antioxidants	VI) other metabolic pathways	plastid	1670.65954	1174.6268
[show peptides]	206	124	5.4	2	39.5	23.2	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	102	4.2	2	67.9	23.2	260	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	1670.65954	1174.6268
[show peptides]	206	82	8.4	2	35.3	23.2	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	206	59	10.0	2	25.5	23.2	260	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1670.65954	1174.6268
[show peptides]	206	51	8.5	2	24.7	23.2	260	-0.435	AT1G05190.1	Rpl6, 50S ribosomal protein L6	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1670.65954	1174.6268
[show peptides]	206	36	4.9	1	28.1	23.2	260	-0.344	AT1G06680.1	PsbP-1, OEE2, OE23	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1174.6268
[show peptides]	207	651	28.7	10	27.5	23.2	24	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2782.69975	1173.48751
[show peptides]	207	123	10.4	2	30.1	23.2	24	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2782.69975	1173.48751
[show peptides]	207	118	8.1	2	28.2	23.2	24	-0.170	AT3G62030.1	ROC4, rotamase CYP 4	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2782.69975	1173.48751
[show peptides]	207	116	15.1	2	29.6	23.2	24	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2782.69975	1173.48751
[show peptides]	207	67	4.9	2	31.2	23.2	24	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2782.69975	1173.48751
[show peptides]	207	59	8.3	2	28.6	23.2	24	-0.118	AT2G05100.1	Lhcb2.1	b) photosystem II	I) photophosphorylation	plastid	2782.69975	1173.48751
[show peptides]	207	48	3.5	1	31.1	23.2	24	-0.271	AT1G54780.1	TLP18.3, thylakoid lumen 18.3 kDa protein	g) auxiliary proteins	I) photophosphorylation	plastid	2782.69975	1173.48751
[show peptides]	207	35	7.0	1	16.3	23.2	24	-0.640	AT3G63540.1	Mog1, PsbP family protein (AT3G63540.1)	b) photosystem II	I) photophosphorylation	cytosol	2782.69975	1173.48751
[show peptides]	208	461	28.7	8	27.5	22.6	1000	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	725.80741	1197.94397
[show peptides]	208	460	43.3	12	22.6	22.6	1000	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	725.80741	1197.94397
[show peptides]	208	80	6.8	2	28.7	22.6	1000	0.034	AT5G54270.1	Lhcb3	b) photosystem II	I) photophosphorylation	plastid	725.80741	1197.94397
[show peptides]	208	43	2.7	1	24.0	22.6	1000	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.80741	1197.94397
[show peptides]	208	43	4.2	1	28.0	22.6	1000	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	725.80741	1197.94397
[show peptides]	208	40	3.4	1	21.5	22.6	1000	0.510	AT1G72610.1	GLP1, ATGER1, GER1, germin-like protein 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	extracellular	725.80741	1197.94397
[show peptides]	209	1408	75.5	26	22.6	22.7	560	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	397	38.2	7	27.7	22.7	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	359	23.1	6	29.2	22.7	560	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	180	16.0	2	27.7	22.7	560	-0.001	AT3G61470.1	Lhca2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	161	7.1	3	26.0	22.7	560	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	142	10.9	3	28.0	22.7	560	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	103	14.5	2	15.2	22.7	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	78	9.5	2	24.2	22.7	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	73	3.7	1	38.9	22.7	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	63	2.2	3	54.0	22.7	560	-0.129	AT1G16350.1	Aldolase-type TIM barrel family protein (AT1G16350.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	1106.40251	1194.50107
[show peptides]	209	44	1.7	1	39.5	22.7	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1194.50107
[show peptides]	209	37	2.1	2	106.0	22.7	560	-0.335	AT3G21540.1	Transducin family protein / WD-40 repeat family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	1106.40251	1194.50107
[show peptides]	209	34	1.0	2	140.9	22.7	560	-0.794	AT1G58210.1	EMB1674, kinase interacting family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1106.40251	1194.50107
[show peptides]	210	697	62.3	18	22.3	22.6	330	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	1488.31551	1200.43026
[show peptides]	210	509	24.2	8	28.0	22.6	330	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	1488.31551	1200.43026
[show peptides]	210	96	7.9	2	29.1	22.6	330	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	1488.31551	1200.43026
[show peptides]	210	83	5.0	2	53.9	22.6	330	-0.090	ATCG00480.1	F1 part, beta subunit (AtpB)	d) atp-synthase	I) photophosphorylation	plastid	1488.31551	1200.43026
[show peptides]	210	74	3.5	1	40.9	22.6	330	-0.105	AT4G04640.1	F1 part, gamma subunit (AtpC1)	d) atp-synthase	I) photophosphorylation	plastid	1488.31551	1200.43026
[show peptides]	210	54	2.2	2	54.0	22.6	330	-0.129	AT1G16350.1	Aldolase-type TIM barrel family protein (AT1G16350.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	1488.31551	1200.43026
[show peptides]	210	45	3.9	1	27.5	22.6	330	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	1488.31551	1200.43026
[show peptides]	211	514	28.7	9	27.5	22.6	1150	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	616.05666	1200.49813
[show peptides]	211	405	35.8	11	22.3	22.6	1150	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	616.05666	1200.49813
[show peptides]	211	206	12.0	4	28.2	22.6	1150	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	616.05666	1200.49813
[show peptides]	211	151	11.8	3	24.0	22.6	1150	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.05666	1200.49813
[show peptides]	211	50	11.1	2	21.5	22.6	1150	0.510	AT1G72610.1	GLP1, ATGER1, GER1, germin-like protein 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	extracellular	616.05666	1200.49813
[show peptides]	211	41	5.5	1	27.8	22.6	1150	0.077	AT1G45474.1	Lhca5	a) photosystem I	I) photophosphorylation	plastid	616.05666	1200.49813
[show peptides]	212	501	39.4	14	22.6	22.6	830	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	829.76771	1200.84183
[show peptides]	212	177	18.2	5	27.5	22.6	830	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	829.76771	1200.84183
[show peptides]	212	80	9.3	2	22.0	22.6	830	0.129	AT1G44575	PsbS, NPQ4	b) photosystem II	I) photophosphorylation	plastid	829.76771	1200.84183
[show peptides]	212	41	3.6	1	24.0	22.6	830	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	829.76771	1200.84183
[show peptides]	213	428	25.2	7	27.5	23.2	56	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2525.11336	1176.50336
[show peptides]	213	316	23.8	5	28.0	23.2	56	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2525.11336	1176.50336
[show peptides]	213	314	18.0	5	29.6	23.2	56	0.093	AT3G61870.1	AT3G61870.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2525.11336	1176.50336
[show peptides]	213	300	23.2	6	27.8	23.2	56	-0.266	AT3G25760.1	AOC1, allene oxide cyclase 1	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2525.11336	1176.50336
[show peptides]	213	149	30.1	3	16.3	23.2	56	-0.640	AT3G63540.1	Mog1, PsbP family protein (AT3G63540.1)	b) photosystem II	I) photophosphorylation	cytosol	2525.11336	1176.50336
[show peptides]	213	131	14.3	4	33.6	23.2	56	-0.087	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G22700.1)	TPR proteins	VI) other metabolic pathways	plastid	2525.11336	1176.50336
[show peptides]	213	52	2.3	1	51.9	23.2	56	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2525.11336	1176.50336
[show peptides]	213	38	5.4	1	26.0	23.2	56	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	2525.11336	1176.50336
[show peptides]	213	35	6.1	1	16.4	23.2	56	-0.810	AT1G07790.1	HTB1, Histone superfamily protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	2525.11336	1176.50336
[show peptides]	214	777	55.3	18	22.6	22.5	1500	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	419.62125	1204.77569
[show peptides]	214	219	12.7	4	24.0	22.5	1500	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1204.77569
[show peptides]	214	215	18.4	5	27.8	22.5	1500	0.077	AT1G45474.1	Lhca5	a) photosystem I	I) photophosphorylation	plastid	419.62125	1204.77569
[show peptides]	214	191	19.0	4	27.5	22.5	1500	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	419.62125	1204.77569
[show peptides]	214	111	14.9	4	21.5	22.5	1500	0.510	AT1G72610.1	GLP1, ATGER1, GER1, germin-like protein 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	extracellular	419.62125	1204.77569
[show peptides]	214	107	7.9	2	28.0	22.5	1500	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	419.62125	1204.77569
[show peptides]	214	43	7.8	1	27.7	22.5	1500	-0.001	AT3G61470.1	Lhca2	a) photosystem I	I) photophosphorylation	plastid	419.62125	1204.77569
[show peptides]	214	34	6.6	1	25.5	22.5	1500	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1204.77569
[show peptides]	215	36	3.4	1	22.3	22.3	700	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	951.78752	1210.40468
[show peptides]	216	539	28.7	9	27.5	23.1	78	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	2394.82159	1177.52517
[show peptides]	216	298	17.7	5	28.0	23.1	78	0.283	AT1G44575.1	PsbS, NPQ4 (Isoform 1)	b) photosystem II	I) photophosphorylation	plastid	2394.82159	1177.52517
[show peptides]	216	180	12.4	3	27.7	23.1	78	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	2394.82159	1177.52517
[show peptides]	216	135	11.2	4	26.0	23.1	78	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	2394.82159	1177.52517
[show peptides]	216	112	11.6	2	24.1	23.1	78	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	2394.82159	1177.52517
[show peptides]	216	106	8.3	3	33.6	23.1	78	-0.087	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G22700.1)	TPR proteins	VI) other metabolic pathways	plastid	2394.82159	1177.52517
[show peptides]	216	103	13.2	3	24.7	23.1	78	-0.220	AT5G13510.1	Rpl10, Ribosomal protein L10 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2394.82159	1177.52517
[show peptides]	216	100	13.2	3	29.1	23.1	78	-0.112	AT3G11630.1	Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2394.82159	1177.52517
[show peptides]	216	61	3.8	1	28.5	23.1	78	-0.244	AT1G77090.1	Mog1, PsbP family protein (AT1G77090.1)	b) photosystem II	I) photophosphorylation	plastid	2394.82159	1177.52517
[show peptides]	216	48	2.5	1	42.8	23.1	78	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2394.82159	1177.52517
[show peptides]	216	38	3.0	1	28.2	23.1	78	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2394.82159	1177.52517
[show peptides]	216	36	3.9	1	25.5	23.1	78	-0.436	AT1G20810.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein (AT1G20810.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2394.82159	1177.52517
[show peptides]	216	36	6.1	1	16.4	23.1	78	-0.810	AT1G07790.1	HTB1, Histone superfamily protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	nucleus	2394.82159	1177.52517
[show peptides]	216	34	3.5	1	28.2	23.1	78	-0.170	AT3G62030.1	ROC4, rotamase CYP 4	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2394.82159	1177.52517
[show peptides]	217	741	53.8	18	22.6	22.3	1700	-0.368	AT4G02770.1	PsaD-1	a) photosystem I	I) photophosphorylation	plastid	303.55873	1212.90185
[show peptides]	217	241	18.4	5	27.8	22.3	1700	0.077	AT1G45474.1	Lhca5	a) photosystem I	I) photophosphorylation	plastid	303.55873	1212.90185
[show peptides]	217	219	12.7	4	24.0	22.3	1700	-0.150	AT1G35680.1	Rpl21, Ribosomal protein L21	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.55873	1212.90185
[show peptides]	217	182	19.0	4	27.5	22.3	1700	0.033	AT1G15820.1	Lhcb6, CP24	b) photosystem II	I) photophosphorylation	plastid	303.55873	1212.90185
[show peptides]	217	78	9.3	2	22.0	22.3	1700	0.129	AT1G44575	PsbS, NPQ4	b) photosystem II	I) photophosphorylation	plastid	303.55873	1212.90185
[show peptides]	217	59	11.1	2	21.5	22.3	1700	0.510	AT1G72610.1	GLP1, ATGER1, GER1, germin-like protein 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	extracellular	303.55873	1212.90185
[show peptides]	217	39	6.6	1	25.5	22.3	1700	-0.264	AT5G47190.1	Rpl19, Ribosomal protein L19 family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.55873	1212.90185
[show peptides]	218	797	50.7	11	24.4	20.6	260	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	1283.32416
[show peptides]	218	396	20.0	5	24.1	20.6	260	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	1283.32416
[show peptides]	218	111	14.1	2	21.0	20.6	260	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	1670.65954	1283.32416
[show peptides]	218	46	1.7	1	39.5	20.6	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1283.32416
[show peptides]	219	806	43.0	12	27.7	21.0	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	642	59.8	18	22.3	21.0	560	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	379	14.1	5	26.0	21.0	560	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	186	18.7	4	29.2	21.0	560	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	126	17.6	3	24.2	21.0	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	100	14.5	2	15.2	21.0	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	54	1.7	1	39.5	21.0	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	40	6.8	1	23.0	21.0	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1266.93947
[show peptides]	219	36	2.2	2	54.0	21.0	560	-0.129	AT1G16350.1	Aldolase-type TIM barrel family protein (AT1G16350.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	peroxisome	1106.40251	1266.93947
[show peptides]	220	124	6.8	2	27.7	21.2	1000	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	725.80741	1255.37904
[show peptides]	220	87	11.3	3	22.3	21.2	1000	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	725.80741	1255.37904
[show peptides]	220	55	4.1	1	26.0	21.2	1000	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	725.80741	1255.37904
[show peptides]	221	186	13.2	4	22.3	21.2	830	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	829.76771	1258.16749
[show peptides]	221	90	4.8	1	27.7	21.2	830	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	829.76771	1258.16749
[show peptides]	221	53	4.1	1	26.0	21.2	830	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	829.76771	1258.16749
[show peptides]	222	324	17.1	5	25.7	20.8	29	-0.049	AT4G09650.1	F1 part, delta subunit (AtpD)	d) atp-synthase	I) photophosphorylation	plastid	2730.94148	1273.22244
[show peptides]	222	267	19.0	5	31.1	20.8	29	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2730.94148	1273.22244
[show peptides]	222	45	7.9	1	23.7	20.8	29	-0.403	AT3G26060.1	PrxQ, Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2730.94148	1273.22244
[show peptides]	222	45	6.6	1	24.4	20.8	29	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1	c) cytochrome b6f complex	I) photophosphorylation	plastid	2730.94148	1273.22244
[show peptides]	223	209	17.6	5	22.3	20.9	1500	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	419.62125	1270.30805
[show peptides]	223	126	17.4	4	28.3	20.9	1500	-0.303	AT5G13120.1	PnsL5	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1270.30805
[show peptides]	223	110	7.6	2	26.9	20.9	1500	-0.396	AT2G39470.1	PPL2	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1270.30805
[show peptides]	223	80	4.8	1	27.7	20.9	1500	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	419.62125	1270.30805
[show peptides]	223	57	12.2	2	20.1	20.9	1500	-0.131	ATCG01090.1	NdhI	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1270.30805
[show peptides]	223	55	4.1	1	26.0	20.9	1500	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	419.62125	1270.30805
[show peptides]	223	34	4.1	1	20.6	20.9	1500	0.005	AT3G27840.1	Rpl12-B, Ribosomal protein L12-B	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1270.30805
[show peptides]	224	239	20.1	6	22.3	20.9	1700	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	303.55873	1272.39758
[show peptides]	224	204	18.9	4	26.9	20.9	1700	-0.396	AT2G39470.1	PPL2	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1272.39758
[show peptides]	224	175	20.1	4	28.3	20.9	1700	-0.303	AT5G13120.1	PnsL5	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1272.39758
[show peptides]	224	115	6.8	2	27.7	20.9	1700	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	303.55873	1272.39758
[show peptides]	224	114	18.6	3	20.1	20.9	1700	-0.131	ATCG01090.1	NdhI	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1272.39758
[show peptides]	224	53	4.1	1	26.0	20.9	1700	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	303.55873	1272.39758
[show peptides]	225	333	17.1	5	25.7	20.8	20	-0.049	AT4G09650.1	F1 part, delta subunit (AtpD)	d) atp-synthase	I) photophosphorylation	plastid	2829.94431	1276.38056
[show peptides]	225	112	12.7	2	24.4	20.8	20	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1	c) cytochrome b6f complex	I) photophosphorylation	plastid	2829.94431	1276.38056
[show peptides]	225	40	7.9	1	23.7	20.8	20	-0.403	AT3G26060.1	PrxQ, Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2829.94431	1276.38056
[show peptides]	225	33	3.2	1	27.3	20.8	20	0.709	ATCG00150.1	F0 part, A subunit (AtpI)	d) atp-synthase	I) photophosphorylation	plastid	2829.94431	1276.38056
[show peptides]	226	664	52.6	12	24.6	19.8	29	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2730.09357	1320.65177
[show peptides]	226	664	52.2	16	21.0	19.8	29	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2730.09357	1320.65177
[show peptides]	226	514	45.7	10	23.8	19.8	29	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2730.09357	1320.65177
[show peptides]	226	157	23.2	3	17.3	19.8	29	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2730.09357	1320.65177
[show peptides]	226	44	7.6	1	21.7	19.8	29	-0.497	AT5G40950.1	Rpl27, Ribosomal protein large subunit 27	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2730.09357	1320.65177
[show peptides]	227	480	44.4	9	23.8	19.7	75	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2411.12989	1324.66799
[show peptides]	227	409	33.9	8	24.6	19.7	75	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2411.12989	1324.66799
[show peptides]	227	274	30.3	5	17.3	19.7	75	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.12989	1324.66799
[show peptides]	227	142	22.8	3	21.0	19.7	75	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2411.12989	1324.66799
[show peptides]	227	111	10.8	2	23.1	19.7	75	0.102	AT1G32990.1	Rpl11, Plastid ribosomal protein 11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2411.12989	1324.66799
[show peptides]	227	52	5.2	1	25.5	19.7	75	-0.210	AT5G63310.1	NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2, nucleoside diphosphate kinase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2411.12989	1324.66799
[show peptides]	228	513	46.2	10	23.8	19.6	53	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2538.8988	1327.9696
[show peptides]	228	496	43.0	9	24.6	19.6	53	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2538.8988	1327.9696
[show peptides]	228	297	36.1	6	17.3	19.6	53	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2538.8988	1327.9696
[show peptides]	228	258	22.5	5	25.5	19.6	53	-0.210	AT5G63310.1	NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2, nucleoside diphosphate kinase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2538.8988	1327.9696
[show peptides]	228	181	22.8	4	21.0	19.6	53	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2538.8988	1327.9696
[show peptides]	228	45	6.3	1	23.1	19.6	53	0.102	AT1G32990.1	Rpl11, Plastid ribosomal protein 11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2538.8988	1327.9696
[show peptides]	229	291	19.5	4	27.7	19.8	560	-0.156	AT3G47470.1	Lhca4, CAB4	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	252	14.1	4	25.7	19.8	560	-0.049	AT4G09650.1	F1 part, delta subunit (AtpD)	d) atp-synthase	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	250	11.2	4	26.0	19.8	560	-0.074	AT3G54890.1	Lhca1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	145	14.0	3	24.2	19.8	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	95	14.5	2	15.2	19.8	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	51	12.5	2	29.2	19.8	560	-0.014	AT1G61520.1	Lhca3	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	45	6.8	1	23.0	19.8	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	45	1.7	1	39.5	19.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	229	44	3.4	1	22.3	19.8	560	-0.388	AT1G03130.1	PsaD-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1319.97846
[show peptides]	230	655	48.9	11	21.0	19.3	12	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2966.46669	1344.88712
[show peptides]	230	558	43.0	10	24.6	19.3	12	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2966.46669	1344.88712
[show peptides]	230	399	40.8	9	23.8	19.3	12	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2966.46669	1344.88712
[show peptides]	230	258	35.5	5	17.3	19.3	12	-0.581	ATCG00900.1	Rps7, Ribosomal protein S7p/S5e family protein	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2966.46669	1344.88712
[show peptides]	231	551	52.6	10	24.6	19.4	15	-0.240	AT4G05180.1	PsbQ-2, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2899.26792	1339.82884
[show peptides]	231	534	47.8	11	21.0	19.4	15	-0.392	ATCG00130.1	F0 part, B/B`subunit (AtpF)	d) atp-synthase	I) photophosphorylation	plastid	2899.26792	1339.82884
[show peptides]	231	429	43.5	9	23.8	19.4	15	-0.320	AT4G21280.1	PsbQ-1, OEC16, OE16	b) photosystem II	I) photophosphorylation	plastid	2899.26792	1339.82884
[show peptides]	232	554	40.7	9	24.2	16.8	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1468.84047
[show peptides]	232	409	25.1	5	23.0	16.8	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1468.84047
[show peptides]	232	153	25.9	3	15.0	16.8	560	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1468.84047
[show peptides]	232	117	35.2	3	15.2	16.8	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1468.84047
[show peptides]	232	61	6.4	1	23.9	16.8	560	-0.107	AT4G32260.1	F0 part, B/B`subunit	d) atp-synthase	I) photophosphorylation	plastid	1106.40251	1468.84047
[show peptides]	232	59	4.4	1	20.2	16.8	560	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1106.40251	1468.84047
[show peptides]	233	340	29.9	6	24.2	16.6	1500	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	419.62125	1478.21936
[show peptides]	233	287	30.8	6	14.2	16.6	1500	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1478.21936
[show peptides]	233	239	16.9	4	23.0	16.6	1500	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	419.62125	1478.21936
[show peptides]	233	177	20.5	4	24.8	16.6	1500	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	419.62125	1478.21936
[show peptides]	233	51	6.0	1	23.2	16.6	1500	0.013	AT4G39710.1	PnsL4	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1478.21936
[show peptides]	233	38	17.4	2	15.0	16.6	1500	-0.395	ATCG00750.1	Rps11, Ribosomal protein S11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1478.21936
[show peptides]	234	260	38.9	6	20.2	15.7	260	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1670.65954	1526.49502
[show peptides]	234	249	44.2	6	20.3	15.7	260	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	1670.65954	1526.49502
[show peptides]	234	165	14.4	3	17.4	15.7	260	0.552	ATCG00730.1	PetD, subunit IV	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	1526.49502
[show peptides]	234	45	2.5	1	39.5	15.7	260	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1670.65954	1526.49502
[show peptides]	235	280	25.6	5	14.2	16.5	1700	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.55873	1484.67776
[show peptides]	235	266	21.7	5	24.2	16.5	1700	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	303.55873	1484.67776
[show peptides]	235	209	20.5	4	24.8	16.5	1700	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	303.55873	1484.67776
[show peptides]	235	200	16.9	4	23.0	16.5	1700	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	303.55873	1484.67776
[show peptides]	236	349	39.8	8	24.2	16.7	1000	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	725.80741	1472.01684
[show peptides]	236	214	16.9	4	23.0	16.7	1000	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	725.80741	1472.01684
[show peptides]	236	92	14.5	2	14.2	16.7	1000	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.80741	1472.01684
[show peptides]	236	34	6.5	1	15.0	16.7	1000	-0.395	ATCG00750.1	Rps11, Ribosomal protein S11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.80741	1472.01684
[show peptides]	236	33	4.4	1	20.2	16.7	1000	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	725.80741	1472.01684
[show peptides]	237	195	17.2	4	24.2	16.7	1150	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	616.05666	1473.5431
[show peptides]	237	153	16.4	3	23.0	16.7	1150	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	616.05666	1473.5431
[show peptides]	237	135	24.8	3	14.2	16.7	1150	-0.567	ATCG00660.1	Rpl20, Ribosomal protein L20	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.05666	1473.5431
[show peptides]	237	49	4.4	1	20.2	16.7	1150	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	616.05666	1473.5431
[show peptides]	237	37	6.5	1	15.0	16.7	1150	-0.395	ATCG00750.1	Rps11, Ribosomal protein S11	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.05666	1473.5431
[show peptides]	237	35	4.1	1	24.8	16.7	1150	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	616.05666	1473.5431
[show peptides]	238	190	17.2	4	24.2	16.7	830	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	829.76771	1475.67981
[show peptides]	238	142	16.4	3	23.0	16.7	830	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	829.76771	1475.67981
[show peptides]	238	49	4.4	1	20.2	16.7	830	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	829.76771	1475.67981
[show peptides]	238	44	4.1	1	24.8	16.7	830	-0.337	AT3G01440.1	PQL1, PQL2, PsbQ-like 1	b) photosystem II	I) photophosphorylation	plastid	829.76771	1475.67981
[show peptides]	239	215	16.4	3	23.0	16.6	330	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1492.90571	1477.35192
[show peptides]	239	71	7.3	1	20.1	16.6	330	0.006	AT3G27830.1	Rpl12-A, Ribosomal protein L12-A	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1492.90571	1477.35192
[show peptides]	239	45	6.4	1	23.9	16.6	330	-0.107	AT4G32260.1	F0 part, B/B`subunit	d) atp-synthase	I) photophosphorylation	plastid	1492.90571	1477.35192
[show peptides]	239	43	8.9	1	20.2	16.6	330	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1492.90571	1477.35192
[show peptides]	240	175	17.2	4	24.2	16.5	700	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	951.78752	1486.31597
[show peptides]	240	47	3.7	1	23.0	16.5	700	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	951.78752	1486.31597
[show peptides]	241	173	23.8	3	15.0	15.3	1150	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	616.05666	1550.72668
[show peptides]	241	160	12.7	3	20.3	15.3	1150	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	616.05666	1550.72668
[show peptides]	241	140	12.8	3	20.2	15.3	1150	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	616.05666	1550.72668
[show peptides]	241	84	9.0	1	15.5	15.3	1150	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	616.05666	1550.72668
[show peptides]	242	583	60.8	11	15.0	15.2	560	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1553.4469
[show peptides]	242	558	61.4	10	15.2	15.2	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1553.4469
[show peptides]	242	234	20.4	4	20.3	15.2	560	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	1106.40251	1553.4469
[show peptides]	242	216	20.6	4	20.2	15.2	560	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1106.40251	1553.4469
[show peptides]	242	97	10.5	2	23.0	15.2	560	0.310	AT4G12800.1	PsaL	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1553.4469
[show peptides]	242	84	5.4	2	39.5	15.2	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	1553.4469
[show peptides]	242	80	9.5	2	24.2	15.2	560	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1553.4469
[show peptides]	242	41	6.9	1	13.2	15.2	560	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1553.4469
[show peptides]	243	639	60.2	12	20.3	14.8	300	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	1562.90571	1577.9894
[show peptides]	243	638	60.0	12	20.2	14.8	300	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1562.90571	1577.9894
[show peptides]	243	496	49.7	10	20.3	14.8	300	-0.192	AT5G38430.1	RbcS, ribulose-bisphosphate carboxylase small chain 3B	calvin cycle	II) carbon fixation	plastid	1562.90571	1577.9894
[show peptides]	243	269	30.3	6	14.5	14.8	300	-0.035	ATCG00470.1	F1 part, epsilon subunit (AtpE)	d) atp-synthase	I) photophosphorylation	plastid	1562.90571	1577.9894
[show peptides]	243	72	9.0	1	15.2	14.8	300	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1562.90571	1577.9894
[show peptides]	243	48	13.3	1	12.7	14.8	300	-0.371	AT4G34620.1	Rps16, Small subunit ribosomal protein 16	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	1562.90571	1577.9894
[show peptides]	244	289	39.2	5	15.0	15.3	1000	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	725.80741	1548.95024
[show peptides]	244	179	20.4	4	20.3	15.3	1000	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	725.80741	1548.95024
[show peptides]	244	176	20.6	4	20.2	15.3	1000	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	725.80741	1548.95024
[show peptides]	244	154	35.2	3	15.2	15.3	1000	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	725.80741	1548.95024
[show peptides]	244	128	14.9	2	15.5	15.3	1000	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	725.80741	1548.95024
[show peptides]	245	305	39.9	6	15.0	15.2	1500	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	419.62125	1555.53772
[show peptides]	245	154	20.7	3	15.2	15.2	1500	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	419.62125	1555.53772
[show peptides]	245	142	22.4	3	15.5	15.2	1500	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	419.62125	1555.53772
[show peptides]	245	114	12.7	3	20.3	15.2	1500	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	419.62125	1555.53772
[show peptides]	245	40	8.8	1	15.5	15.2	1500	0.121	AT2G28900.1	OEP16, ATOEP16-L, ATOEP16-1, OEP16-1, outer plastid envelope protein 16-1	protein transporters	III) transport	plastid	419.62125	1555.53772
[show peptides]	246	182	23.8	3	15.0	15.2	700	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	951.78752	1554.40888
[show peptides]	246	149	12.7	3	20.3	15.2	700	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	951.78752	1554.40888
[show peptides]	246	92	9.0	1	15.5	15.2	700	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	951.78752	1554.40888
[show peptides]	247	309	39.9	6	15.0	15.2	830	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	829.76771	1557.01999
[show peptides]	247	187	20.4	4	20.3	15.2	830	-0.180	AT5G38410.1	RbcS, ribulose-bisphosphate carboxylase small chain 1B	calvin cycle	II) carbon fixation	plastid	829.76771	1557.01999
[show peptides]	247	186	22.4	3	15.5	15.2	830	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	829.76771	1557.01999
[show peptides]	247	169	20.6	4	20.2	15.2	830	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	829.76771	1557.01999
[show peptides]	247	143	35.2	3	15.2	15.2	830	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	829.76771	1557.01999
[show peptides]	247	39	8.1	1	18.6	15.2	830	-0.621	ATCG00810.1	Rpl22, Ribosomal protein L22	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	829.76771	1557.01999
[show peptides]	248	248	35.0	4	15.0	15.1	1700	-0.175	AT4G28750.1	PsaE-1	a) photosystem I	I) photophosphorylation	plastid	303.55873	1562.47254
[show peptides]	248	142	35.2	3	15.2	15.1	1700	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	303.55873	1562.47254
[show peptides]	248	84	9.0	1	15.5	15.1	1700	-0.337	ATCG00770.1	Rps8, Ribosomal protein S8	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	303.55873	1562.47254
[show peptides]	248	72	4.4	1	20.2	15.1	1700	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	303.55873	1562.47254
[show peptides]	249	815	60.2	14	20.3	14.5	430	-0.212	AT5G38420.1	RbcS, ribulose-bisphosphate carboxylase small chain 2B	calvin cycle	II) carbon fixation	plastid	1357.29361	1593.80267
[show peptides]	249	762	60.0	14	20.2	14.5	430	-0.267	AT1G67090.1	RbcS, ribulose-bisphosphate carboxylase small chain 1A	calvin cycle	II) carbon fixation	plastid	1357.29361	1593.80267
[show peptides]	249	673	59.7	13	20.3	14.5	430	-0.192	AT5G38430.1	RbcS, ribulose-bisphosphate carboxylase small chain 3B	calvin cycle	II) carbon fixation	plastid	1357.29361	1593.80267
[show peptides]	249	81	9.0	1	15.2	14.5	430	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1357.29361	1593.80267
[show peptides]	249	33	1.1	1	62.1	14.5	430	-0.176	AT2G31870.1	TEJ, Poly (ADP-ribose) glycohydrolase (PARG)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	1357.29361	1593.80267
[show peptides]	250	274	19.3	4	15.3	10.0	560	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1889.03077
[show peptides]	250	110	14.5	2	15.2	10.0	560	-0.127	AT2G20260.1	PsaE-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1889.03077
[show peptides]	250	96	23.5	2	9.0	10.0	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1889.03077
[show peptides]	251	59	8.9	1	11.3	9.9	1700	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1893.06528
[show peptides]	251	56	7.6	1	15.3	9.9	1700	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	303.55873	1893.06528
[show peptides]	252	365	32.8	6	24.4	9.7	340	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54445	1905.35755
[show peptides]	252	178	15.3	3	24.1	9.7	340	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54445	1905.35755
[show peptides]	252	40	7.6	1	15.3	9.7	340	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	1470.54445	1905.35755
[show peptides]	253	167	15.9	3	15.3	9.9	1500	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	419.62125	1894.73786
[show peptides]	253	70	8.9	1	11.3	9.9	1500	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1894.73786
[show peptides]	254	88	7.6	1	15.3	9.9	1000	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	725.80741	1892.84476
[show peptides]	254	41	15.1	1	7.7	9.9	1000	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	725.80741	1892.84476
[show peptides]	254	38	10.0	1	14.6	9.9	1000	-0.001	AT1G79040.1	PsbR	b) photosystem II	I) photophosphorylation	plastid	725.80741	1892.84476
[show peptides]	255	36	7.6	1	15.3	9.8	830	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	829.76771	1897.59096
[show peptides]	256	428	25.0	7	17.1	8.9	560	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1966.22974
[show peptides]	256	303	56.8	5	9.0	8.9	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1966.22974
[show peptides]	256	96	15.2	2	15.3	8.9	560	-0.107	AT1G52230.1	PsaH-2	a) photosystem I	I) photophosphorylation	plastid	1106.40251	1966.22974
[show peptides]	256	38	1.6	1	56.8	8.9	560	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1106.40251	1966.22974
[show peptides]	256	33	1.2	1	61.7	8.9	560	0.006	AT1G57770.1	FAD/NAD(P)-binding oxidoreductase family protein (AT1G57770.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	1106.40251	1966.22974
[show peptides]	256	33	5.4	1	13.7	8.9	560	-0.006	AT3G45050.1	AT3G45050.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	1106.40251	1966.22974
[show peptides]	257	370	21.9	7	17.1	9.0	1700	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	303.55873	1960.91469
[show peptides]	257	70	8.9	1	11.3	9.0	1700	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	303.55873	1960.91469
[show peptides]	258	395	21.9	7	17.1	9.0	1500	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	419.62125	1960.67299
[show peptides]	258	63	8.9	1	11.3	9.0	1500	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	419.62125	1960.67299
[show peptides]	259	265	16.9	5	17.1	9.0	1000	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	725.80741	1960.15983
[show peptides]	259	75	8.9	1	11.3	9.0	1000	0.868	ATCG01070.1	NdhE	e) NAD(P)H dehydrogenase	I) photophosphorylation	plastid	725.80741	1960.15983
[show peptides]	260	306	21.9	7	17.1	9.0	830	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	829.76771	1960.75938
[show peptides]	261	106	16.9	3	17.1	8.8	340	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	1470.54445	1969.38765
[show peptides]	261	51	6.1	1	24.4	8.8	340	-0.087	AT4G03280.1	PetC, Rieske-FeS-protein, PGR1	c) cytochrome b6f complex	I) photophosphorylation	plastid	1470.54445	1969.38765
[show peptides]	262	412	75.3	7	9.0	7.8	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40251	2047.56012
[show peptides]	262	185	9.1	3	39.5	7.8	560	0.372	ATCG00270.1	PsbD, D2	b) photosystem II	I) photophosphorylation	plastid	1106.40251	2047.56012
[show peptides]	262	136	10.6	3	17.1	7.8	560	0.019	AT1G55670.1	PsaG	a) photosystem I	I) photophosphorylation	plastid	1106.40251	2047.56012
[show peptides]	262	37	1.6	1	56.8	7.8	560	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	1106.40251	2047.56012
[show peptides]	263	245	56.8	5	9.0	7.9	1700	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	303.55873	2038.14273
[show peptides]	264	245	56.8	6	9.0	7.9	1500	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	419.62125	2039.78119
[show peptides]	265	143	39.5	3	9.0	7.7	340	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1470.54445	2056.06019
[show peptides]	266	37	1.6	1	56.8	73.8	43	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2612.20654	374.82472
[show peptides]	267	185	33.7	3	9.4	7.0	260	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1670.65954	2112.45466
[show peptides]	267	110	6.6	2	35.3	7.0	260	-0.093	ATCG00540.1	PetA, cytochrome f	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	2112.45466
[show peptides]	267	71	3.1	1	38.9	7.0	260	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1670.65954	2112.45466
[show peptides]	267	55	15.1	1	7.7	7.0	260	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	1670.65954	2112.45466
[show peptides]	268	168	33.7	3	9.4	6.9	1000	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	725.80741	2114.4519
[show peptides]	268	54	15.1	1	7.7	6.9	1000	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	725.80741	2114.4519
[show peptides]	269	197	33.7	3	9.4	7.0	210	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1841.63486	2110.41357
[show peptides]	270	207	33.7	3	9.4	6.9	560	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1106.40251	2118.20164
[show peptides]	270	117	11.5	3	13.2	6.9	560	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	1106.40251	2118.20164
[show peptides]	270	60	15.1	1	7.7	6.9	560	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	1106.40251	2118.20164
[show peptides]	270	56	16.0	1	9.0	6.9	560	-0.077	ATCG01060.1	PsaC	a) photosystem I	I) photophosphorylation	plastid	1106.40251	2118.20164
[show peptides]	271	165	33.7	3	9.4	6.9	830	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	829.76771	2118.32464
[show peptides]	271	58	15.1	1	7.7	6.9	830	0.351	ATCG00710.1	PsbH	b) photosystem II	I) photophosphorylation	plastid	829.76771	2118.32464
[show peptides]	272	124	21.7	2	9.4	6.7	340	0.047	ATCG00580.1	PsbE, alpha-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1470.54445	2130.63553
[show peptides]	273	181	19.2	4	13.2	5.9	560	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	1106.40251	2195.66371
[show peptides]	273	70	3.1	1	38.9	5.9	560	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	1106.40251	2195.66371
[show peptides]	274	90	10.8	2	13.2	5.9	1000	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	725.80741	2196.80604
[show peptides]	275	53	6.9	1	13.2	5.8	830	0.346	AT1G30380.1	PsaK	a) photosystem I	I) photophosphorylation	plastid	829.76771	2204.3515
[show peptides]	276	88	36.8	1	4.5	3.9	260	0.329	ATCG00560.1	PsbL	b) photosystem II	I) photophosphorylation	plastid	1670.65954	2366.1045
[show peptides]	276	78	18.9	2	4.2	3.9	260	1.086	ATCG00600.1	PetG	c) cytochrome b6f complex	I) photophosphorylation	plastid	1670.65954	2366.1045
[show peptides]	276	36	20.5	1	4.4	3.9	260	0.646	ATCG00570.1	PsbF, beta-Cyt b559	b) photosystem II	I) photophosphorylation	plastid	1670.65954	2366.1045
[show peptides]	277	1649	39.1	32	102.0	83.4	130	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2160.96572	327.08806
[show peptides]	277	811	26.4	19	103.4	83.4	130	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2160.96572	327.08806
[show peptides]	277	73	3.0	2	68.3	83.4	130	-0.370	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein (AT3G18890.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2160.96572	327.08806
[show peptides]	277	42	1.1	1	112.9	83.4	130	-0.141	AT4G33010.1	Glycine decarboxylase, P-protein 1	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2160.96572	327.08806
[show peptides]	278	117	36.8	2	4.5	3.8	560	0.329	ATCG00560.1	PsbL	b) photosystem II	I) photophosphorylation	plastid	1106.40251	2368.95617
[show peptides]	279	109	36.8	2	4.5	3.9	1000	0.329	ATCG00560.1	PsbL	b) photosystem II	I) photophosphorylation	plastid	725.80741	2361.29056
[show peptides]	280	2029	45.3	40	102.0	81.9	110	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2225.58733	333.99898
[show peptides]	280	728	19.5	15	103.4	81.9	110	-0.395	AT5G50920.1	Clp-C1, ClpC1, ATHSP93-V, HSP93-V, DCA1	proteases	V) protein folding & processing	plastid	2225.58733	333.99898
[show peptides]	280	461	19.8	8	42.9	81.9	110	-0.120	AT2G21330.1	FBA1, fructose-bisphosphate aldolase 1	calvin cycle	II) carbon fixation	plastid	2225.58733	333.99898
[show peptides]	280	266	16.1	6	43.0	81.9	110	-0.167	AT4G38970.1	FBA2, fructose-bisphosphate aldolase 2	calvin cycle	II) carbon fixation	plastid	2225.58733	333.99898
[show peptides]	280	112	6.7	3	28.2	81.9	110	0.022	AT1G29910.1	Lhcb1.2, CAB3, AB180	b) photosystem II	I) photophosphorylation	plastid	2225.58733	333.99898
[show peptides]	280	41	2.3	1	51.9	81.9	110	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2225.58733	333.99898
[show peptides]	281	959	27.5	20	86.0	74.3	74	-0.204	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1, Translation elongation factor EFG/EF2 protein	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2416.77746	372.4691
[show peptides]	281	834	28.1	16	79.9	74.3	74	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2416.77746	372.4691
[show peptides]	281	186	7.0	5	76.9	74.3	74	-0.359	AT5G49910.1	Chloroplast heat shock protein 70-2, cpHsc70-2	cpHsc70	V) protein folding & processing	plastid	2416.77746	372.4691
[show peptides]	281	162	6.8	5	76.5	74.3	74	-0.321	AT4G24280.1	Chloroplast heat shock protein 70-1, cpHsc70-1	cpHsc70	V) protein folding & processing	plastid	2416.77746	372.4691
[show peptides]	281	85	2.8	2	102.0	74.3	74	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2416.77746	372.4691
[show peptides]	281	34	1.6	1	56.8	74.3	74	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2416.77746	372.4691
[show peptides]	282	1184	24.3	24	102.0	82.4	85	-0.466	AT3G45140.1	LOX2, ATLOX2, lipoxygenase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2356.16274	331.87144
[show peptides]	282	116	2.3	3	176.6	82.4	85	-0.141	AT5G04140.1	GLU1, GLS1, GLUS, FD-GOGAT, glutamate synthase 1	amino acid metabolism	VI) other metabolic pathways	plastid	2356.16274	331.87144
[show peptides]	282	75	6.3	2	42.8	82.4	85	-0.047	AT1G12900.1	GapA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2	calvin cycle	II) carbon fixation	plastid	2356.16274	331.87144
[show peptides]	282	47	5.1	2	47.4	82.4	85	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2356.16274	331.87144
[show peptides]	282	34	1.6	1	56.8	82.4	85	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2356.16274	331.87144
[show peptides]	283	1589	37.4	33	71.9	63.0	27	-0.384	AT5G04590.1	SIR, sulfite reductase	sulfur metabolism	VI) other metabolic pathways	plastid	2745.15174	446.13898
[show peptides]	283	1282	33.0	33	71.9	63.0	27	-0.384	AT5G04590.1	SIR, sulfite reductase	sulfur metabolism	VI) other metabolic pathways	plastid	2745.15174	446.13898
[show peptides]	283	379	13.6	7	63.3	63.0	27	-0.056	AT3G13470.1	TCP-1/cpn60 chaperonin family protein	Cpn60	V) protein folding & processing	plastid	2745.15174	446.13898
[show peptides]	283	267	25.3	7	35.1	63.0	27	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2745.15174	446.13898
[show peptides]	283	188	22.4	6	35.0	63.0	27	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2745.15174	446.13898
[show peptides]	283	148	7.6	4	66.8	63.0	27	-0.211	AT1G31800.1	CYP97A3, LUT5, cytochrome P450, family 97, subfamily A, polypeptide 3	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2745.15174	446.13898
[show peptides]	283	125	6.8	3	65.5	63.0	27	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2745.15174	446.13898
[show peptides]	283	124	4.2	4	79.9	63.0	27	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2745.15174	446.13898
[show peptides]	283	123	6.0	6	35.0	63.0	27	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2745.15174	446.13898
[show peptides]	283	91	4.4	4	66.8	63.0	27	-0.211	AT1G31800.1	CYP97A3, LUT5, cytochrome P450, family 97, subfamily A, polypeptide 3	carotenoid biosynthesis	VI) other metabolic pathways	plastid	2745.15174	446.13898
[show peptides]	283	90	4.9	3	65.5	63.0	27	-0.396	AT2G15620.1	NIR1, NIR, ATHNIR, nitrite reductase 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2745.15174	446.13898
[show peptides]	283	79	5.0	3	73.2	63.0	27	-0.125	AT1G06430.1	FtsH8, FtsH protease 8	proteases	V) protein folding & processing	plastid	2745.15174	446.13898
[show peptides]	283	69	4.6	4	79.9	63.0	27	-0.238	AT3G60750.1	Transketolase (AT3G60750.1)	calvin cycle	II) carbon fixation	plastid	2745.15174	446.13898
[show peptides]	283	69	3.9	2	65.4	63.0	27	-0.294	AT4G18810.1	NAD(P)-binding Rossmann-fold superfamily protein (AT4G18810.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2745.15174	446.13898
[show peptides]	283	60	3.6	1	30.1	63.0	27	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2745.15174	446.13898
[show peptides]	283	58	2.4	1	65.6	63.0	27	-0.218	AT4G19170.1	NCED4, CCD4, nine-cis-epoxycarotenoid dioxygenase 4	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2745.15174	446.13898
[show peptides]	283	45	7.0	1	19.8	63.0	27	0.224	AT3G20390.1	Endoribonuclease L-PSP family protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2745.15174	446.13898
[show peptides]	283	41	4.5	2	41.1	63.0	27	0.011	AT4G18380.1	F-box family protein (AT4G18380.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2745.15174	446.13898
[show peptides]	283	34	1.6	1	56.8	63.0	27	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2745.15174	446.13898
[show peptides]	284	1287	38.7	25	62.0	59.6	15	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2898.72989	473.98827
[show peptides]	284	974	27.3	17	67.9	59.6	15	-0.174	AT5G51820.1	PGM, ATPGMP, PGM1, STF1, phosphoglucomutase	starch metabolism	VI) other metabolic pathways	plastid	2898.72989	473.98827
[show peptides]	284	694	27.6	25	62.0	59.6	15	0.002	AT2G28000.1	Cpn60A, CH-CPN60A, SLP, chaperonin-60 alpha	Cpn60	V) protein folding & processing	plastid	2898.72989	473.98827
[show peptides]	284	565	24.4	14	65.8	59.6	15	-0.160	AT3G06350.1	EMB3004, MEE32, putative dehydroquinate dehydratase, putative shikimate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	331	16.9	14	65.8	59.6	15	-0.160	AT3G06350.1	EMB3004, MEE32, putative dehydroquinate dehydratase, putative shikimate dehydrogenase	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	260	15.1	8	69.2	59.6	15	-0.300	AT3G55400.1	OVA1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2898.72989	473.98827
[show peptides]	284	258	10.8	5	61.7	59.6	15	0.006	AT1G57770.1	FAD/NAD(P)-binding oxidoreductase family protein (AT1G57770.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	174	9.7	4	58.2	59.6	15	-0.232	AT5G42650.1	AOS, CYP74A, DDE2, allene oxide synthase	jasmonic acid biosynthesis	VI) other metabolic pathways	plastid	2898.72989	473.98827
[show peptides]	284	131	4.3	2	62.8	59.6	15	-0.170	AT5G17530.1	Phosphoglucosamine mutase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	119	5.0	2	65.1	59.6	15	-0.199	AT4G15110.1	CYP97B3, cytochrome P450, family 97, subfamily B, polypeptide 3	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	113	5.4	3	67.3	59.6	15	-0.215	AT1G70820.1	Phosphoglucomutase, putative / glucose phosphomutase, putative	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	110	4.7	3	64.9	59.6	15	-0.235	AT2G35040.1	AICARFT, IMPCHase bienzyme family protein	nucleic acid metabolism (general)	IV) nucleic acid biosynthesis & processing	plastid	2898.72989	473.98827
[show peptides]	284	55	2.1	2	62.8	59.6	15	-0.170	AT5G17530.1	Phosphoglucosamine mutase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	51	1.9	5	61.7	59.6	15	0.006	AT1G57770.1	FAD/NAD(P)-binding oxidoreductase family protein (AT1G57770.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2898.72989	473.98827
[show peptides]	284	45	2.4	1	35.0	59.6	15	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2898.72989	473.98827
[show peptides]	284	44	5.6	1	24.1	59.6	15	0.572	ATCG00720.1	PetB, cytochrome b6	c) cytochrome b6f complex	I) photophosphorylation	plastid	2898.72989	473.98827
[show peptides]	284	37	1.6	1	56.8	59.6	15	-0.504	AT5G12010.1	AT5G12010.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2898.72989	473.98827
[show peptides]	284	36	3.9	1	22.0	59.6	15	0.129	AT1G44575	PsbS, NPQ4	b) photosystem II	I) photophosphorylation	plastid	2898.72989	473.98827
[show peptides]	285	1367	58.6	35	51.9	49.1	12	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2980.17419	583.97432
[show peptides]	285	517	19.4	11	51.4	49.1	12	-0.309	AT3G22890.1	APS1, ATP sulfurylase 1	sulfur metabolism	VI) other metabolic pathways	plastid	2980.17419	583.97432
[show peptides]	285	507	23.9	9	51.6	49.1	12	-0.120	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b, RAB GTPase homolog E1B	protein biosynthesis	IV) nucleic acid biosynthesis & processing	plastid	2980.17419	583.97432
[show peptides]	285	257	16.9	7	52.5	49.1	12	-0.095	AT1G63940.1	MDAR6, monodehydroascorbate reductase 6	antioxidants	VI) other metabolic pathways	plastid	2980.17419	583.97432
[show peptides]	286	1416	53.2	41	51.9	46.2	12	-0.308	AT2G39730.1	RCA, rubisco activase (Isoform 1)	other proteins	II) carbon fixation	plastid	2971.87598	621.23351
[show peptides]	286	667	30.4	12	50.1	46.2	12	0.176	AT3G12780.1	Phosphoglycerate kinase 1, PGK1	calvin cycle	II) carbon fixation	plastid	2971.87598	621.23351
[show peptides]	286	367	22.2	7	36.4	46.2	12	-0.138	AT5G58330	Lactate/malate dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2971.87598	621.23351
[show peptides]	286	224	13.0	6	49.8	46.2	12	-0.149	AT4G31990.1	ASP5, AAT3, ATAAT1, aspartate aminotransferase 5	amino acid metabolism	VI) other metabolic pathways	plastid	2971.87598	621.23351
[show peptides]	286	208	13.6	6	52.0	46.2	12	-0.320	AT1G08550.1	NPQ1, AVDE1, non-photochemical quenching 1	g) auxiliary proteins	I) photophosphorylation	plastid	2971.87598	621.23351
[show peptides]	286	169	14.9	5	47.6	46.2	12	-0.348	AT3G56940.1	CRD1, CHL27, ACSF, dicarboxylate diiron protein, putative	chlorophyll biosynthesis	VI) other metabolic pathways	plastid	2971.87598	621.23351
[show peptides]	286	158	10.7	4	47.4	46.2	12	-0.413	AT5G35630.1	GS2, GLN2, ATGSL1, glutamine synthetase 2	amino acid metabolism	VI) other metabolic pathways	plastid	2971.87598	621.23351
[show peptides]	286	104	13.0	3	44.4	46.2	12	-0.263	AT1G11860.1	Glycine decarboxylase, T-protein	amino acid metabolism	VI) other metabolic pathways	mitochondrion	2971.87598	621.23351
[show peptides]	286	43	3.4	1	44.1	46.2	12	-0.057	AT5G14200.1	ATIMD1, IMD1, isopropylmalate dehydrogenase 1	glucosinolate metabolism	VI) other metabolic pathways	plastid	2971.87598	621.23351
[show peptides]	286	33	2.9	2	27.5	46.2	12	-0.566	AT5G53030.1	Protein of unknown function (DUF688)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2971.87598	621.23351
[show peptides]	287	843	36.7	20	39.7	35.8	12	-0.134	AT5G36700.1	ATPGLP1, PGLP1, 2-phosphoglycolate phosphatase 1	other proteins	II) carbon fixation	plastid	2972.37573	803.59366
[show peptides]	287	289	22.5	7	37.6	35.8	12	-0.245	AT3G63490.1	Rpl1/L10, Ribosomal protein L1p/L10e family	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2972.37573	803.59366
[show peptides]	287	170	12.2	4	37.4	35.8	12	-0.710	AT1G55480.1	ZKT, protein containing PDZ domain, a K-box domain, and a TPR region	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.37573	803.59366
[show peptides]	287	151	11.4	3	35.8	35.8	12	0.165	AT1G53240.1	mMDH1, Lactate/malate dehydrogenase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	mitochondrion	2972.37573	803.59366
[show peptides]	287	122	6.2	3	40.4	35.8	12	-0.105	AT1G31190.1	IMPL1, myo-inositol monophosphatase like 1	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.37573	803.59366
[show peptides]	287	108	5.1	2	37.3	35.8	12	0.096	AT5G09660.1	PMDH2, peroxisomal NAD-malate dehydrogenase 2	fatty acid metabolism	VI) other metabolic pathways	peroxisome	2972.37573	803.59366
[show peptides]	287	95	8.6	2	33.0	35.8	12	-0.119	AT5G47760.1	PGLP2, ATPGLP2, ATPK5, 2-phosphoglycolate phosphatase 2	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.37573	803.59366
[show peptides]	287	46	7.4	2	39.1	35.8	12	-0.268	AT1G67280.1	Glyoxalase, Bleomycin resistance protein, Dioxygenase superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.37573	803.59366
[show peptides]	287	34	3.2	1	37.0	35.8	12	-0.078	AT5G03880.1	Thioredoxin family protein	antioxidants	VI) other metabolic pathways	plastid	2972.37573	803.59366
[show peptides]	288	168	13.4	2	20.3	13.7	40	-0.069	AT4G03520.1	ATHM2, Thioredoxin superfamily protein	antioxidants	VI) other metabolic pathways	plastid	2636.99306	1640.80274
[show peptides]	288	72	8.0	2	18.8	13.7	40	-0.252	AT1G03600.1	Psb27, photosystem II family protein	b) photosystem II	I) photophosphorylation	plastid	2636.99306	1640.80274
[show peptides]	288	36	3.2	1	27.9	13.7	40	-0.169	AT5G36970.1	NHL25, NDR1/HIN1-like 25	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid new	2636.99306	1640.80274
[show peptides]	289	43	1.1	1	83.0	1.6	890	0.015	AT5G12080.1	MSL10, ATMSL10, mechanosensitive channel of small conductance-like 10	other transporters	III) transport	plasma membrane	782.18842	2568.10602
[show peptides]	290	36	5.5	1	16.9	1.3	570	-0.251	AT2G30930.1	AT2G30930.1	proteins of unknown functions	VIII) proteins of unknown functions	nucleus	1093.18792	2598.91309
[show peptides]	291	1071	57.2	19	35.1	31.2	12	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2972.1027	913.2969
[show peptides]	291	1043	57.1	18	35.0	31.2	12	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2972.1027	913.2969
[show peptides]	291	584	44.0	10	34.9	31.2	12	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.1027	913.2969
[show peptides]	291	231	17.5	4	30.5	31.2	12	-0.053	AT2G34460.1	NAD(P)-binding Rossmann-fold superfamily protein (AT2G34460.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.1027	913.2969
[show peptides]	291	201	20.4	4	30.1	31.2	12	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2972.1027	913.2969
[show peptides]	291	194	13.8	3	37.9	31.2	12	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2972.1027	913.2969
[show peptides]	291	149	7.2	2	35.8	31.2	12	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2972.1027	913.2969
[show peptides]	291	118	10.7	2	31.3	31.2	12	-0.008	AT1G16880.1	Uridylyltransferase-related	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2972.1027	913.2969
[show peptides]	291	80	3.4	1	35.7	31.2	12	-0.022	AT4G22890.1	PGR5-LIKE A	g) auxiliary proteins	I) photophosphorylation	plastid	2972.1027	913.2969
[show peptides]	291	71	4.5	1	31.1	31.2	12	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2972.1027	913.2969
[show peptides]	291	39	4.4	1	33.3	31.2	12	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase	calvin cycle	II) carbon fixation	plastid	2972.1027	913.2969
[show peptides]	292	989	50.9	16	35.1	31.5	15	-0.327	AT5G66570.1	PsbO-1, OEE1, OEE33, OE33, MSP-1	b) photosystem II	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	861	50.2	15	35.0	31.5	15	-0.348	AT3G50820.1	PsbO-2, OEC33	b) photosystem II	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	505	26.4	8	37.9	31.5	15	-0.294	AT4G09010.1	APX4, TL29, ascorbate peroxidase 4	antioxidants	VI) other metabolic pathways	plastid	2905.34649	907.02149
[show peptides]	292	436	25.8	7	34.9	31.5	15	-0.268	AT4G04020.1	FIB, fibrillin	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.34649	907.02149
[show peptides]	292	349	23.8	7	35.8	31.5	15	0.086	AT2G21960.1	AT2G21960.1	proteins of unknown functions	VIII) proteins of unknown functions	plastid	2905.34649	907.02149
[show peptides]	292	317	19.8	7	29.4	31.5	15	-0.334	AT4G17600.1	LIL3:1, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	282	19.0	5	33.3	31.5	15	-0.065	AT2G21170.1	TIM, PDTPI, triosephosphate isomerase	calvin cycle	II) carbon fixation	plastid	2905.34649	907.02149
[show peptides]	292	272	16.8	4	30.5	31.5	15	-0.053	AT2G34460.1	NAD(P)-binding Rossmann-fold superfamily protein (AT2G34460.1)	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.34649	907.02149
[show peptides]	292	234	16.4	4	30.1	31.5	15	-0.025	AT4G10340.1	Lhcb5, CP26	b) photosystem II	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	223	7.7	3	35.7	31.5	15	-0.022	AT4G22890.1	PGR5-LIKE A	g) auxiliary proteins	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	217	11.4	3	31.1	31.5	15	-0.021	AT5G01530.1	Lhcb4.1, CP29	b) photosystem II	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	119	16.7	3	28.6	31.5	15	-0.251	AT5G47110.1	LIL3:2, Chlorophyll A-B binding family protein	g) auxiliary proteins	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	88	7.2	2	31.3	31.5	15	-0.008	AT1G16880.1	Uridylyltransferase-related	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.34649	907.02149
[show peptides]	292	87	13.2	3	31.2	31.5	15	-0.064	AT3G08940.2	Lhcb4.2, CP29 (Isoform 2)	b) photosystem II	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	61	6.4	1	24.4	31.5	15	-0.193	AT5G07020.1	Proline-rich family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.34649	907.02149
[show peptides]	292	45	3.1	1	38.9	31.5	15	0.334	ATCG00020.1	PsbA, D1	b) photosystem II	I) photophosphorylation	plastid	2905.34649	907.02149
[show peptides]	292	38	3.2	1	38.9	31.5	15	-0.283	AT4G28740.1	AT4G28740.1	proteins of unknown functions	VIII) proteins of unknown functions	cytosol	2905.34649	907.02149
[show peptides]	292	34	3.4	1	35.2	31.5	15	-0.173	AT4G31530.1	NAD(P)-binding Rossmann-fold superfamily protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	plastid	2905.34649	907.02149
[show peptides]	292	34	1.0	1	79.5	31.5	15	-0.687	AT4G24970.1	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	unassigned proteins	VII) proteins (so far) not assigned to a functional category	nucleus	2905.34649	907.02149
[show peptides]	293	169	12.0	2	20.1	17.6	12	0.006	AT3G27830.1	Rpl12-A, Ribosomal protein L12-A	ribosomal complexes	IV) nucleic acid biosynthesis & processing	plastid	2969.3254	1428.44074
[show peptides]	293	48	6.4	1	23.9	17.6	12	-0.107	AT4G32260.1	F0 part, B/B`subunit	d) atp-synthase	I) photophosphorylation	plastid	2969.3254	1428.44074
[show peptides]	293	45	5.0	1	24.2	17.6	12	-0.011	AT1G31330.1	PsaF	a) photosystem I	I) photophosphorylation	plastid	2969.3254	1428.44074